Wall clock time and date at job start Sun Mar 29 2020 23:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 119.99931 * 2 1 4 4 H 1.48496 * 109.47293 * 239.99955 * 3 2 1 5 5 H 1.48506 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47290 * 119.99932 * 3 2 1 7 7 C 1.38946 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00093 * 198.58351 * 7 2 1 9 9 N 1.37099 * 119.99893 * 18.58667 * 7 2 1 10 10 C 1.34768 * 120.00452 * 46.21744 * 9 7 2 11 11 O 1.21300 * 119.99495 * 355.75308 * 10 9 7 12 12 C 1.50701 * 120.00564 * 175.75630 * 10 9 7 13 13 H 1.09002 * 109.63277 * 40.03319 * 12 10 9 14 14 C 1.53016 * 109.64058 * 279.39849 * 12 10 9 15 15 C 1.50070 * 110.14652 * 190.87645 * 14 12 10 16 16 C 1.29442 * 124.07155 * 17.13137 * 15 14 12 17 17 C 1.50064 * 124.07962 * 359.52773 * 16 15 14 18 18 C 1.53019 * 110.14644 * 17.13499 * 17 16 15 19 19 C 1.46506 * 119.99696 * 225.94055 * 9 7 2 20 20 C 1.54271 * 110.03255 * 62.80584 * 19 9 7 21 21 C 1.54883 * 104.19518 * 217.10478 * 20 19 9 22 22 C 1.54891 * 102.75094 * 37.94102 * 21 20 19 23 23 C 1.53872 * 110.03189 * 305.63812 * 19 9 7 24 24 H 0.97006 * 120.00290 * 4.94303 * 1 2 3 25 25 H 1.09006 * 109.36059 * 311.08005 * 14 12 10 26 26 H 1.08996 * 109.36423 * 70.67107 * 14 12 10 27 27 H 1.08001 * 117.96170 * 197.14766 * 15 14 12 28 28 H 1.08007 * 117.96004 * 179.55302 * 16 15 14 29 29 H 1.08997 * 109.36006 * 256.92199 * 17 16 15 30 30 H 1.09003 * 109.35457 * 137.33844 * 17 16 15 31 31 H 1.09002 * 109.64498 * 190.87760 * 18 17 16 32 32 H 1.09009 * 109.64458 * 70.24641 * 18 17 16 33 33 H 1.09004 * 110.01553 * 184.25000 * 19 9 7 34 34 H 1.08995 * 110.48247 * 335.78291 * 20 19 9 35 35 H 1.08997 * 110.48464 * 98.42824 * 20 19 9 36 36 H 1.09002 * 110.75509 * 279.62712 * 21 20 19 37 37 H 1.08999 * 110.91905 * 156.33287 * 21 20 19 38 38 H 1.09004 * 110.48748 * 203.37830 * 22 21 20 39 39 H 1.08996 * 110.48414 * 80.73687 * 22 21 20 40 40 H 1.09001 * 110.03558 * 238.56733 * 23 19 9 41 41 H 1.08995 * 110.03732 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0466 -1.2275 0.2986 9 7 1.3770 -2.3598 -0.3774 10 6 0.6179 -2.3802 -1.4908 11 8 0.4308 -1.3577 -2.1160 12 6 0.0013 -3.6731 -1.9590 13 1 -0.3599 -4.2388 -1.1001 14 6 1.0443 -4.4944 -2.7198 15 6 0.3857 -5.6500 -3.4148 16 6 -0.8867 -5.7324 -3.6379 17 6 -1.8823 -4.6887 -3.2238 18 6 -1.1666 -3.3738 -2.9073 19 6 1.5319 -3.5752 0.4258 20 6 0.9519 -3.3530 1.8380 21 6 1.9164 -4.1265 2.7708 22 6 3.3002 -3.8617 2.1272 23 6 3.0250 -3.8987 0.6098 24 1 -0.4851 0.8369 -0.0724 25 1 1.5348 -3.8605 -3.4586 26 1 1.7890 -4.8714 -2.0188 27 1 1.0123 -6.4635 -3.7494 28 1 -1.2547 -6.6069 -4.1538 29 1 -2.4174 -5.0311 -2.3381 30 1 -2.5940 -4.5270 -4.0334 31 1 -1.8614 -2.6848 -2.4269 32 1 -0.7865 -2.9324 -3.8288 33 1 1.0261 -4.4100 -0.0593 34 1 0.9498 -2.2918 2.0867 35 1 -0.0555 -3.7637 1.9055 36 1 1.6861 -5.1919 2.7668 37 1 1.8795 -3.7287 3.7849 38 1 4.0065 -4.6437 2.4061 39 1 3.6773 -2.8827 2.4228 40 1 3.2436 -4.8908 0.2148 41 1 3.6343 -3.1512 0.1019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125301183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:47 Heat of formation + Delta-G solvation = -29.155735 kcal Electronic energy + Delta-G solvation = -21265.410021 eV Core-core repulsion = 18337.898106 eV Total energy + Delta-G solvation = -2927.511916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.35468 -37.58399 -36.22543 -33.22062 -31.69592 -30.47375 -30.20835 -28.01836 -26.78016 -24.96879 -23.01554 -22.09093 -20.03909 -19.73602 -18.97453 -17.36489 -16.58227 -15.87659 -15.46520 -14.83377 -14.48978 -14.15101 -13.85684 -13.30727 -13.23721 -12.92421 -12.69766 -12.49513 -12.20668 -11.83980 -11.78523 -11.29350 -10.98609 -10.80270 -10.71615 -10.60036 -10.49272 -10.42343 -10.35302 -10.16157 -10.11515 -9.95407 -9.82855 -9.60282 -8.72296 -8.58280 -7.86310 -6.97385 -5.98776 -3.77933 2.53395 3.36500 3.43227 3.46912 4.28391 4.43304 4.91460 5.09839 5.19439 5.24533 5.30787 5.35094 5.49754 5.59286 5.64729 5.79494 5.89050 5.89893 5.95318 6.01272 6.13477 6.18796 6.20752 6.25127 6.29821 6.32808 6.40814 6.44600 6.50003 6.57878 6.67786 6.73069 6.86942 6.90886 6.97083 7.03275 7.20566 7.28753 7.74200 8.41427 9.20367 9.29922 9.79637 10.43246 11.08075 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.008870 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.963322 B = 3155.819537 C = 4307.961115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.341 4.341 8 H 0.075 0.925 9 N -0.448 5.448 10 C 0.484 3.516 11 O -0.536 6.536 12 C -0.104 4.104 13 H 0.076 0.924 14 C -0.078 4.078 15 C -0.149 4.149 16 C -0.161 4.161 17 C -0.091 4.091 18 C -0.095 4.095 19 C 0.128 3.872 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.130 4.130 24 H 0.261 0.739 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -11.466 -0.314 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.468 4.468 8 H 0.093 0.907 9 N -0.170 5.170 10 C 0.271 3.729 11 O -0.414 6.414 12 C -0.126 4.126 13 H 0.094 0.906 14 C -0.116 4.116 15 C -0.167 4.167 16 C -0.179 4.179 17 C -0.128 4.128 18 C -0.133 4.133 19 C 0.023 3.977 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.169 4.169 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.448 -10.799 -0.580 10.824 hybrid contribution 0.342 0.652 0.044 0.738 sum 0.790 -10.147 -0.536 10.192 Atomic orbital electron populations 1.69873 1.06372 1.27434 1.42951 1.25167 0.94653 0.99040 0.94642 0.86478 0.79493 0.82931 0.78310 1.20212 1.21404 1.20505 1.18762 0.94105 0.84463 1.49422 0.90740 1.43338 1.45979 1.08104 1.19602 1.19871 0.82745 0.88698 0.81562 1.90512 1.60227 1.34438 1.56198 1.21329 0.96264 0.96778 0.98187 0.90596 1.20377 0.97482 0.94782 0.98923 1.22097 0.95957 0.98665 0.99988 1.22035 0.95186 0.99336 1.01317 1.20501 0.97028 0.94581 1.00718 1.21345 0.96651 0.95611 0.99668 1.21756 0.94323 0.89325 0.92259 1.22658 0.96831 1.02366 0.94575 1.22437 0.95897 0.99204 0.98522 1.22257 0.96589 1.00890 0.95723 1.22447 0.97919 1.00405 0.96108 0.92837 0.90586 0.90985 0.88335 0.88580 0.91308 0.91514 0.91282 0.91506 0.91305 0.89172 0.93181 0.92605 0.92439 0.92997 0.91602 0.93065 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.60 11.82 55.50 0.66 -23.95 16 2 C 0.07 2.10 4.38 -17.47 -0.08 2.03 16 3 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.34 -9.14 7.52 -14.93 -0.11 -9.26 16 8 H 0.07 1.95 6.89 -52.49 -0.36 1.59 16 9 N -0.45 -10.90 2.44 -106.54 -0.26 -11.16 16 10 C 0.48 12.10 6.21 -10.99 -0.07 12.03 16 11 O -0.54 -15.74 13.92 5.54 0.08 -15.66 16 12 C -0.10 -2.02 1.68 -91.56 -0.15 -2.17 16 13 H 0.08 1.43 6.51 -51.93 -0.34 1.09 16 14 C -0.08 -1.31 5.26 -28.18 -0.15 -1.46 16 15 C -0.15 -2.09 9.80 -35.90 -0.35 -2.45 16 16 C -0.16 -2.17 9.80 -35.90 -0.35 -2.52 16 17 C -0.09 -1.31 6.12 -28.18 -0.17 -1.48 16 18 C -0.09 -1.75 4.66 -26.52 -0.12 -1.88 16 19 C 0.13 2.52 2.83 -66.81 -0.19 2.33 16 20 C -0.13 -2.40 6.42 -25.07 -0.16 -2.56 16 21 C -0.12 -1.88 6.91 -24.74 -0.17 -2.05 16 22 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 23 C -0.13 -2.25 6.20 -25.61 -0.16 -2.41 16 24 H 0.26 7.55 8.32 -40.82 -0.34 7.21 16 25 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 26 H 0.07 1.14 7.26 -51.93 -0.38 0.77 16 27 H 0.10 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.10 1.09 8.06 -52.48 -0.42 0.66 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.30 8.11 -51.92 -0.42 0.88 16 33 H 0.07 1.25 4.85 -51.93 -0.25 1.00 16 34 H 0.09 2.06 7.23 -51.93 -0.38 1.69 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.47 6.61 -51.93 -0.34 1.13 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -31.10 316.97 -8.87 -39.97 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.67 Total: 2.82 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.41 Total: -13.84 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.40 Total: -35.11 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.66 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.10 -8.87 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125301183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.810 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds