Wall clock time and date at job start Mon Mar 30 2020 00:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31341 * 1 3 3 Si 1.86804 * 120.00097 * 2 1 4 4 H 1.48495 * 109.47446 * 275.65268 * 3 2 1 5 5 H 1.48503 * 109.46869 * 35.65058 * 3 2 1 6 6 H 1.48501 * 109.47214 * 155.64797 * 3 2 1 7 7 C 1.39078 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99873 * 15.68990 * 7 2 1 9 9 N 1.36815 * 119.99623 * 195.69150 * 7 2 1 10 10 C 1.34778 * 120.00075 * 75.27708 * 9 7 2 11 11 O 1.21670 * 119.99707 * 180.54359 * 10 9 7 12 12 C 1.46949 * 120.00243 * 0.54893 * 10 9 7 13 13 C 1.31687 * 118.11294 * 213.47234 * 12 10 9 14 14 C 1.50101 * 123.77205 * 180.14310 * 13 12 10 15 15 C 1.53007 * 110.19282 * 343.30955 * 14 13 12 16 16 C 1.53365 * 108.51174 * 49.56476 * 15 14 13 17 17 C 1.50093 * 118.11282 * 33.73068 * 12 10 9 18 18 C 1.46503 * 120.00176 * 255.27631 * 9 7 2 19 19 C 1.54272 * 110.02949 * 302.09638 * 18 9 7 20 20 C 1.54964 * 104.16021 * 95.75348 * 19 18 9 21 21 C 1.54884 * 102.77799 * 37.88548 * 20 19 18 22 22 C 1.53867 * 110.03212 * 59.30865 * 18 9 7 23 23 H 0.97002 * 120.00386 * 359.97438 * 1 2 3 24 24 H 1.07995 * 118.11301 * 0.40884 * 13 12 10 25 25 H 1.08998 * 109.49218 * 222.98235 * 14 13 12 26 26 H 1.08995 * 109.16503 * 103.42788 * 14 13 12 27 27 H 1.08997 * 109.63034 * 289.85690 * 15 14 13 28 28 H 1.08995 * 109.79235 * 169.36826 * 15 14 13 29 29 H 1.09005 * 109.62751 * 172.22446 * 16 15 14 30 30 H 1.08993 * 109.63105 * 51.63119 * 16 15 14 31 31 H 1.09005 * 109.36183 * 283.03692 * 17 12 10 32 32 H 1.09002 * 109.35999 * 42.76150 * 17 12 10 33 33 H 1.08994 * 110.02266 * 180.70484 * 18 9 7 34 34 H 1.09000 * 110.48363 * 214.40241 * 19 18 9 35 35 H 1.08996 * 110.48426 * 337.04165 * 19 18 9 36 36 H 1.09001 * 110.71970 * 279.57188 * 20 19 18 37 37 H 1.08995 * 110.91895 * 156.29812 * 20 19 18 38 38 H 1.08999 * 110.48766 * 203.40531 * 21 20 19 39 39 H 1.09005 * 110.59652 * 80.81824 * 21 20 19 40 40 H 1.09002 * 110.03196 * 359.95936 * 22 18 9 41 41 H 1.08998 * 110.03464 * 121.33807 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.3756 2.1154 -1.3932 5 1 1.5097 2.6153 0.8160 6 1 3.5996 1.4087 0.5773 7 6 2.0088 -1.2045 -0.0005 8 1 1.4990 -2.1222 -0.2539 9 7 3.3387 -1.2266 0.3199 10 6 3.7246 -1.0968 1.6047 11 8 4.9077 -1.1066 1.8885 12 6 2.7164 -0.9436 2.6628 13 6 3.0170 -0.1932 3.7024 14 6 2.0860 0.0475 4.8549 15 6 0.6558 -0.3335 4.4669 16 6 0.6772 -1.7341 3.8426 17 6 1.4056 -1.6562 2.4993 18 6 4.3434 -1.3914 -0.7335 19 6 4.0924 -2.7053 -1.5022 20 6 3.2644 -2.2695 -2.7374 21 6 3.9041 -0.9110 -3.1168 22 6 4.2234 -0.2510 -1.7594 23 1 -0.4851 0.8400 0.0004 24 1 3.9877 0.2796 3.7250 25 1 2.1165 1.1008 5.1333 26 1 2.4035 -0.5579 5.7038 27 1 0.2692 0.3841 3.7432 28 1 0.0215 -0.3373 5.3533 29 1 -0.3443 -2.0808 3.6858 30 1 1.2029 -2.4221 4.5047 31 1 0.7868 -1.1148 1.7836 32 1 1.5866 -2.6654 2.1295 33 1 5.3427 -1.3985 -0.2983 34 1 5.0369 -3.1511 -1.8141 35 1 3.5242 -3.4038 -0.8881 36 1 2.2148 -2.1417 -2.4726 37 1 3.3714 -2.9874 -3.5506 38 1 3.1984 -0.3012 -3.6808 39 1 4.8181 -1.0644 -3.6907 40 1 3.4171 0.4247 -1.4740 41 1 5.1641 0.2960 -1.8215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128499404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:45 Heat of formation + Delta-G solvation = -31.098271 kcal Electronic energy + Delta-G solvation = -21654.788924 eV Core-core repulsion = 18727.192774 eV Total energy + Delta-G solvation = -2927.596150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60331 -37.59108 -36.33341 -34.10629 -31.85852 -30.45904 -29.90833 -28.11222 -27.19079 -24.75525 -22.80528 -22.13725 -20.16480 -20.01638 -19.08934 -17.73576 -16.64339 -15.92325 -15.56377 -14.64040 -14.48316 -14.15307 -13.95835 -13.70650 -13.09519 -13.00179 -12.74597 -12.61689 -12.33481 -11.80375 -11.58489 -11.55296 -11.17403 -11.05392 -10.84111 -10.64762 -10.52656 -10.38060 -10.20283 -10.14318 -10.01176 -9.93559 -9.75675 -9.57243 -8.89827 -8.52416 -7.96267 -7.28619 -6.48161 -4.39929 2.50537 3.09118 3.22647 3.32448 4.12112 4.16796 4.54962 4.80888 5.29223 5.34434 5.38326 5.41901 5.49256 5.58840 5.95891 6.03123 6.03977 6.08240 6.11972 6.22939 6.23510 6.26124 6.26275 6.33903 6.35773 6.46900 6.48917 6.54142 6.61165 6.71860 6.82215 6.88600 6.90923 7.01306 7.08012 7.30952 7.42548 7.59860 7.90779 7.98425 8.41211 9.04190 9.24151 9.75390 10.56178 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.009054 C = 0.008275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.146550 B = 3091.895780 C = 3383.034719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.084 3.916 3 Si 0.861 3.139 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.333 4.333 8 H 0.096 0.904 9 N -0.465 5.465 10 C 0.532 3.468 11 O -0.596 6.596 12 C -0.101 4.101 13 C -0.148 4.148 14 C -0.080 4.080 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.086 4.086 18 C 0.125 3.875 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.133 4.133 23 H 0.276 0.724 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.140 0.860 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -1.140 1.158 1.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.124 4.124 3 Si 0.689 3.311 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.461 4.461 8 H 0.113 0.887 9 N -0.186 5.186 10 C 0.323 3.677 11 O -0.481 6.481 12 C -0.104 4.104 13 C -0.168 4.168 14 C -0.117 4.117 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.122 4.122 18 C 0.021 3.979 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.171 4.171 23 H 0.086 0.914 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.548 -1.053 1.252 2.252 hybrid contribution 0.411 1.133 -0.189 1.220 sum 1.960 0.080 1.063 2.231 Atomic orbital electron populations 1.69618 1.06077 1.28235 1.45326 1.25721 0.94988 0.98200 0.93456 0.86985 0.81683 0.84131 0.78291 1.20082 1.21607 1.18317 1.18644 0.81962 0.95025 1.50460 0.88689 1.43548 1.06329 1.65821 1.02935 1.19168 0.87795 0.76719 0.83994 1.90626 1.18738 1.55206 1.83490 1.20797 0.96533 0.99406 0.93668 1.22419 0.99360 1.00017 0.95011 1.20356 0.94389 1.00649 0.96314 1.21577 0.95748 0.98281 1.00083 1.21675 1.00213 0.95986 0.97875 1.20868 0.93496 1.00819 0.97049 1.21717 0.93612 0.93562 0.88969 1.22501 0.98858 0.97306 0.96944 1.22477 1.01306 0.95322 0.96303 1.22222 0.99395 0.97168 0.96519 1.22579 1.00673 0.98639 0.95191 0.91389 0.87902 0.91719 0.91377 0.91575 0.92629 0.92152 0.93219 0.84233 0.91879 0.90233 0.92605 0.91342 0.89727 0.93149 0.92387 0.92716 0.91137 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.73 13.00 55.50 0.72 -21.01 16 2 C 0.08 2.09 3.81 -17.45 -0.07 2.02 16 3 Si 0.86 20.75 23.88 -169.99 -4.06 16.69 16 4 H -0.27 -6.46 6.96 56.52 0.39 -6.07 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.60 6.55 56.52 0.37 -6.23 16 7 C -0.33 -8.00 4.10 -15.02 -0.06 -8.06 16 8 H 0.10 2.43 7.95 -52.49 -0.42 2.01 16 9 N -0.47 -10.97 1.52 -107.92 -0.16 -11.13 16 10 C 0.53 13.16 5.93 -12.73 -0.08 13.09 16 11 O -0.60 -15.89 15.79 5.22 0.08 -15.81 16 12 C -0.10 -2.27 4.85 -103.26 -0.50 -2.77 16 13 C -0.15 -3.03 9.36 -36.47 -0.34 -3.37 16 14 C -0.08 -1.31 6.11 -28.17 -0.17 -1.48 16 15 C -0.12 -1.95 6.00 -26.54 -0.16 -2.11 16 16 C -0.12 -2.09 6.00 -26.54 -0.16 -2.25 16 17 C -0.09 -1.81 4.12 -28.17 -0.12 -1.92 16 18 C 0.13 2.67 3.35 -66.81 -0.22 2.44 16 19 C -0.12 -2.15 6.10 -25.03 -0.15 -2.31 16 20 C -0.12 -2.01 6.56 -24.70 -0.16 -2.17 16 21 C -0.12 -1.97 6.83 -25.08 -0.17 -2.14 16 22 C -0.13 -2.68 6.02 -25.62 -0.15 -2.84 16 23 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 24 H 0.10 2.18 7.58 -52.49 -0.40 1.78 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.14 3.27 4.15 -51.93 -0.22 3.05 16 32 H 0.06 1.35 7.95 -51.93 -0.41 0.93 16 33 H 0.08 1.77 6.94 -51.93 -0.36 1.41 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.31 7.97 -51.93 -0.41 0.90 16 36 H 0.08 1.65 7.17 -51.93 -0.37 1.27 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.59 2.45 -51.93 -0.13 1.46 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -26.90 303.93 -7.90 -34.80 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.54 Total: 5.75 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.52 Total: -13.87 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.56 Total: -32.14 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.08 Total: -15.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.06 Total: 16.69 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.90 -7.90 -34.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128499404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.702 kcal (2) G-P(sol) polarization free energy of solvation -26.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds