Wall clock time and date at job start Mon Mar 30 2020 00:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.47299 * 2 1 4 4 C 1.34518 * 125.79258 * 89.99868 * 3 2 1 5 5 C 1.41380 * 106.84085 * 180.22716 * 4 3 2 6 6 C 1.34515 * 106.84253 * 359.57248 * 5 4 3 7 7 C 1.50699 * 125.79003 * 180.11517 * 6 5 4 8 8 H 1.08993 * 109.45319 * 348.43195 * 7 6 5 9 9 C 1.54869 * 109.44694 * 108.38142 * 7 6 5 10 10 C 1.47097 * 110.31917 * 191.30979 * 9 7 6 11 11 C 1.52577 * 114.32137 * 297.19232 * 10 9 7 12 12 C 1.50884 * 109.35815 * 85.01476 * 11 10 9 13 13 C 1.53944 * 110.09892 * 268.11313 * 12 11 10 14 14 N 1.44580 * 109.45127 * 228.50711 * 7 6 5 15 15 C 1.36936 * 118.64310 * 329.23878 * 14 7 6 16 16 H 1.07998 * 120.00124 * 325.01586 * 15 14 7 17 17 C 1.38812 * 120.00203 * 145.01582 * 15 14 7 18 18 N 1.31629 * 119.99812 * 349.72888 * 17 15 14 19 19 Si 1.86802 * 120.00261 * 169.73286 * 17 15 14 20 20 H 1.48496 * 109.47390 * 89.99643 * 19 17 15 21 21 H 1.48506 * 109.47047 * 209.99859 * 19 17 15 22 22 H 1.48501 * 109.46989 * 329.99496 * 19 17 15 23 23 O 1.34305 * 108.42120 * 0.43051 * 6 5 4 24 24 H 1.08999 * 109.47157 * 60.00172 * 1 2 3 25 25 H 1.09003 * 109.47051 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46805 * 300.00478 * 1 2 3 27 27 H 1.08998 * 109.46805 * 239.99522 * 2 1 3 28 28 H 1.09009 * 109.47080 * 119.99908 * 2 1 3 29 29 H 1.08000 * 126.57390 * 359.96457 * 4 3 2 30 30 H 1.07997 * 126.58086 * 179.73327 * 5 4 3 31 31 H 1.08996 * 109.32616 * 311.56340 * 9 7 6 32 32 H 1.08997 * 109.33148 * 71.04822 * 9 7 6 33 33 H 1.08998 * 108.51459 * 58.44544 * 10 9 7 34 34 H 1.08999 * 108.51169 * 175.94417 * 10 9 7 35 35 H 1.09002 * 109.48869 * 204.97643 * 11 10 9 36 36 H 1.08996 * 109.48918 * 325.02691 * 11 10 9 37 37 H 1.09005 * 109.36498 * 28.30273 * 12 11 10 38 38 H 1.09000 * 109.36724 * 148.04505 * 12 11 10 39 39 H 1.09000 * 108.95107 * 161.24718 * 13 12 11 40 40 H 1.08997 * 108.94723 * 279.88251 * 13 12 11 41 41 H 0.96999 * 119.99597 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2946 2.1625 1.0911 5 6 2.7353 3.4249 0.6320 6 6 2.7251 3.3760 -0.7122 7 6 3.1217 4.4971 -1.6379 8 1 3.2231 5.4203 -1.0674 9 6 4.4739 4.1559 -2.3113 10 6 5.0121 5.3368 -3.0039 11 6 4.1393 5.8470 -4.1467 12 6 3.0809 6.7696 -3.5941 13 6 1.8038 5.9743 -3.2680 14 7 2.1046 4.6673 -2.6513 15 6 1.3909 3.5709 -3.0556 16 1 1.8696 2.6042 -3.1083 17 6 0.0520 3.7018 -3.3978 18 7 -0.5852 4.8253 -3.1444 19 14 -0.8456 2.2834 -4.2177 20 1 -1.4528 1.4145 -3.1778 21 1 -1.9128 2.8177 -5.1014 22 1 0.1155 1.4906 -5.0259 23 8 2.2949 2.1610 -1.0895 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 2.1850 1.8542 2.1204 30 1 3.0269 4.2662 1.2432 31 1 5.1833 3.8293 -1.5510 32 1 4.3254 3.3516 -3.0318 33 1 5.1336 6.1392 -2.2764 34 1 5.9942 5.0855 -3.4042 35 1 4.7573 6.3898 -4.8619 36 1 3.6624 5.0030 -4.6449 37 1 3.4531 7.2439 -2.6860 38 1 2.8481 7.5363 -4.3331 39 1 1.1898 6.5567 -2.5811 40 1 1.2439 5.8106 -4.1887 41 1 -1.5209 4.9166 -3.3832 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150726101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:42 Heat of formation + Delta-G solvation = 18.871636 kcal Electronic energy + Delta-G solvation = -21326.953522 eV Core-core repulsion = 18401.524229 eV Total energy + Delta-G solvation = -2925.429293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69885 -37.87948 -33.88757 -33.54151 -32.46550 -31.54606 -30.71351 -27.77909 -25.95437 -24.37343 -23.25153 -22.44724 -20.80619 -19.90174 -19.50435 -18.88432 -16.96083 -15.45338 -15.27403 -14.81349 -14.69818 -14.04671 -14.00417 -13.54503 -13.42115 -13.23523 -12.58272 -12.46765 -12.03687 -12.01158 -11.85375 -11.69481 -11.33416 -11.18975 -11.04680 -10.84894 -10.65034 -10.63431 -10.20981 -10.07210 -9.97528 -9.67853 -9.58475 -9.52549 -9.01399 -8.38862 -7.41770 -6.54213 -5.76380 -3.27862 2.62647 3.37023 3.39684 3.44012 3.47242 3.82245 4.51971 5.19040 5.25455 5.38048 5.40178 5.51478 5.59437 5.60526 5.69318 5.76811 5.86470 5.88803 6.04863 6.05443 6.11433 6.20662 6.27187 6.39216 6.48643 6.55687 6.59745 6.66298 6.71034 6.73090 6.76382 6.86683 6.97186 6.99993 7.15066 7.35046 7.43047 7.69050 7.94480 8.16789 8.55200 9.27689 9.87712 10.37450 11.30701 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.010268 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.923071 B = 2726.297524 C = 4002.688097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.036 4.036 3 C -0.039 4.039 4 C -0.215 4.215 5 C -0.245 4.245 6 C 0.049 3.951 7 C 0.257 3.743 8 H 0.063 0.937 9 C -0.137 4.137 10 C -0.102 4.102 11 C -0.108 4.108 12 C -0.144 4.144 13 C 0.182 3.818 14 N -0.580 5.580 15 C -0.252 4.252 16 H 0.072 0.928 17 C 0.015 3.985 18 N -0.899 5.899 19 Si 0.895 3.105 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.278 1.278 23 O -0.133 6.133 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.068 0.932 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -2.938 3.982 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.073 4.073 3 C -0.090 4.090 4 C -0.234 4.234 5 C -0.265 4.265 6 C -0.004 4.004 7 C 0.148 3.852 8 H 0.081 0.919 9 C -0.178 4.178 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.183 4.183 13 C 0.057 3.943 14 N -0.301 5.301 15 C -0.381 4.381 16 H 0.089 0.911 17 C -0.184 4.184 18 N -0.543 5.543 19 Si 0.725 3.275 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.203 1.203 23 O -0.027 6.027 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.768 -2.950 3.627 8.226 hybrid contribution -0.694 -0.541 -0.048 0.881 sum 6.074 -3.491 3.579 7.867 Atomic orbital electron populations 1.21794 0.94498 1.01347 1.03161 1.19909 0.96066 0.88537 1.02830 1.22310 1.05910 0.95233 0.85526 1.21265 1.08909 0.94929 0.98326 1.21312 1.12048 0.99079 0.94049 1.22915 0.98180 0.85504 0.93760 1.19066 0.89386 0.89649 0.87090 0.91949 1.21477 0.97957 0.98549 0.99808 1.20304 0.98007 0.97973 0.97643 1.20968 0.96647 0.99868 0.97036 1.22086 0.98627 0.98206 0.99349 1.20969 0.91037 0.84437 0.97826 1.43716 1.39830 1.06185 1.40344 1.19215 0.90664 0.88665 1.39564 0.91083 1.25225 0.96271 0.96645 1.00267 1.70026 1.09627 1.25489 1.49108 0.86416 0.79506 0.82380 0.79232 1.21180 1.21711 1.20290 1.84368 1.63251 1.22120 1.32986 0.91725 0.92487 0.92491 0.90744 0.89989 0.85042 0.84841 0.93208 0.91704 0.93367 0.93848 0.93994 0.90707 0.93616 0.93017 0.95442 0.91375 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.89 37.16 0.37 -1.95 16 2 C -0.04 -0.55 6.47 -27.89 -0.18 -0.73 16 3 C -0.04 -0.75 6.57 -35.63 -0.23 -0.99 16 4 C -0.21 -4.00 10.81 -39.70 -0.43 -4.43 16 5 C -0.25 -4.88 10.79 -39.70 -0.43 -5.31 16 6 C 0.05 1.08 5.62 -35.62 -0.20 0.88 16 7 C 0.26 5.47 2.50 -69.12 -0.17 5.30 16 8 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 9 C -0.14 -2.54 5.05 -28.58 -0.14 -2.68 16 10 C -0.10 -1.67 5.15 -29.78 -0.15 -1.82 16 11 C -0.11 -1.88 5.51 -28.01 -0.15 -2.03 16 12 C -0.14 -2.66 5.71 -27.30 -0.16 -2.81 16 13 C 0.18 4.24 4.65 -2.94 -0.01 4.23 16 14 N -0.58 -14.09 2.19 -165.79 -0.36 -14.46 16 15 C -0.25 -6.76 7.50 -15.06 -0.11 -6.87 16 16 H 0.07 1.96 6.30 -52.49 -0.33 1.63 16 17 C 0.02 0.43 4.97 -17.43 -0.09 0.34 16 18 N -0.90 -25.96 11.30 55.49 0.63 -25.34 16 19 Si 0.89 21.95 29.57 -169.99 -5.03 16.93 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 O -0.13 -3.04 7.79 5.68 0.04 -3.00 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 30 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 0.75 7.36 -51.93 -0.38 0.37 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.50 7.48 -51.93 -0.39 1.11 16 37 H 0.05 0.80 7.32 -51.93 -0.38 0.42 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.70 7.95 -51.93 -0.41 0.29 16 40 H 0.07 1.76 6.82 -51.93 -0.35 1.40 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -29.31 320.44 -8.86 -38.17 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.87 Total: 1.74 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -2.10 Total: -18.88 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.26 Total: -39.79 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.31 -8.86 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150726101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.043 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds