Wall clock time and date at job start Mon Mar 30 2020 00:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99379 * 2 1 4 4 C 1.38748 * 120.06018 * 359.97003 * 3 2 1 5 5 C 1.38116 * 119.94607 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05824 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.95013 * 180.02562 * 6 5 4 8 8 C 1.38249 * 120.10642 * 359.79329 * 6 5 4 9 9 C 1.38160 * 120.05777 * 0.46033 * 8 6 5 10 10 C 1.50699 * 120.03319 * 179.79274 * 9 8 6 11 11 H 1.08998 * 109.47629 * 219.72846 * 10 9 8 12 12 C 1.52997 * 109.47156 * 99.72191 * 10 9 8 13 13 N 1.46904 * 109.46851 * 339.72639 * 10 9 8 14 14 C 1.46899 * 111.00029 * 204.99994 * 13 10 9 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 10 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 H 1.09002 * 109.47021 * 60.00842 * 1 2 3 25 25 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47474 * 300.00347 * 1 2 3 27 27 H 1.08003 * 120.02358 * 0.05329 * 4 3 2 28 28 H 1.08002 * 119.97564 * 180.02562 * 5 4 3 29 29 H 1.08995 * 109.47196 * 89.99510 * 7 6 5 30 30 H 1.09002 * 109.47473 * 210.00242 * 7 6 5 31 31 H 1.09000 * 109.46610 * 330.00070 * 7 6 5 32 32 H 1.08002 * 119.96974 * 180.23154 * 8 6 5 33 33 H 1.09007 * 109.47004 * 180.02562 * 12 10 9 34 34 H 1.09007 * 109.47280 * 300.00182 * 12 10 9 35 35 H 1.08997 * 109.47489 * 60.00240 * 12 10 9 36 36 H 1.00908 * 110.99583 * 328.94906 * 13 10 9 37 37 H 1.09002 * 109.47043 * 299.99792 * 14 13 10 38 38 H 1.09001 * 109.47354 * 59.99854 * 14 13 10 39 39 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 40 40 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 41 41 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0006 5 6 1.9207 3.6048 -0.0012 6 6 3.3017 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0005 8 6 4.0558 2.5173 0.0049 9 6 3.4311 1.2850 0.0002 10 6 4.2537 0.0223 0.0014 11 1 3.7926 -0.7125 -0.6586 12 6 4.3220 -0.5404 1.4225 13 7 5.6115 0.3221 -0.4723 14 6 6.2456 -0.8734 -1.0438 15 6 7.6547 -0.5224 -1.5257 16 6 8.3054 -1.7490 -2.1114 17 1 7.7676 -2.6851 -2.1378 18 6 9.5870 -1.6758 -2.6146 19 7 10.1547 -2.7461 -3.1263 20 14 10.5165 -0.0560 -2.5710 21 1 11.2764 0.0445 -1.2990 22 1 11.4591 0.0049 -3.7168 23 1 9.5529 1.0702 -2.6621 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2127 2.3203 -0.0002 28 1 1.3338 4.5114 -0.0012 29 1 4.1502 5.3427 1.0271 30 1 4.9440 4.9383 -0.5139 31 1 3.3580 5.7462 -0.5148 32 1 5.1343 2.5754 0.0092 33 1 4.9174 -1.4536 1.4235 34 1 4.7832 0.1943 2.0825 35 1 3.3146 -0.7629 1.7741 36 1 5.6030 1.0802 -1.1382 37 1 6.3047 -1.6521 -0.2833 38 1 5.6530 -1.2319 -1.8855 39 1 7.5952 0.2561 -2.2863 40 1 8.2476 -0.1637 -0.6843 41 1 11.0564 -2.6946 -3.4799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161542576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:11 Heat of formation + Delta-G solvation = -25.093790 kcal Electronic energy + Delta-G solvation = -19639.260440 eV Core-core repulsion = 16711.924663 eV Total energy + Delta-G solvation = -2927.335777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46071 -37.90824 -36.56807 -33.48624 -32.13072 -31.49793 -29.71650 -28.45744 -27.86245 -25.98514 -24.39576 -23.12988 -21.40327 -20.26560 -19.91729 -18.08872 -16.77931 -16.40071 -15.87998 -15.69503 -14.75565 -14.37223 -14.26633 -14.21525 -13.92005 -13.71324 -13.35784 -13.00924 -12.64152 -12.34714 -12.26888 -12.11327 -11.95541 -11.77730 -11.56693 -11.30368 -11.18693 -10.95807 -10.89960 -10.52988 -10.08364 -9.74049 -9.68011 -9.17829 -8.85837 -8.49648 -8.06260 -7.88029 -6.00439 -3.98432 1.28768 1.36166 3.19029 3.35913 3.42425 3.47398 3.66522 4.49872 4.52635 4.64347 4.81378 4.87185 4.90112 4.95018 5.16502 5.25457 5.33117 5.34429 5.39536 5.54557 5.60051 5.69908 5.71007 5.85429 6.00913 6.09567 6.15220 6.20723 6.31890 6.32621 6.40801 6.55044 6.58675 6.77680 6.85634 7.21103 7.31115 7.44213 7.67113 7.80859 7.96350 8.57890 9.04084 9.62117 11.13013 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022269 B = 0.004431 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.043341 B = 6317.102705 C = 7237.606256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.123 3.877 4 C -0.207 4.207 5 C -0.089 4.089 6 C -0.123 4.123 7 C -0.109 4.109 8 C -0.071 4.071 9 C -0.106 4.106 10 C 0.130 3.870 11 H 0.054 0.946 12 C -0.128 4.128 13 N -0.690 5.690 14 C 0.073 3.927 15 C -0.010 4.010 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.905 5.905 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.142 0.858 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.335 0.665 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.012 0.988 40 H 0.021 0.979 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.099 12.961 7.831 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.078 3.922 4 C -0.225 4.225 5 C -0.107 4.107 6 C -0.124 4.124 7 C -0.166 4.166 8 C -0.090 4.090 9 C -0.107 4.107 10 C 0.020 3.980 11 H 0.071 0.929 12 C -0.186 4.186 13 N -0.322 5.322 14 C -0.055 4.055 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.544 5.544 20 Si 0.710 3.290 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.190 1.190 24 H 0.071 0.929 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.031 0.969 40 H 0.039 0.961 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.565 12.601 8.361 24.728 hybrid contribution -0.254 0.775 -0.910 1.222 sum -19.819 13.376 7.450 25.044 Atomic orbital electron populations 1.23027 0.78838 1.03817 1.01044 1.86120 1.20909 1.26787 1.88661 1.18827 0.91682 0.84209 0.97509 1.21117 0.99649 0.92313 1.09451 1.20756 0.93988 0.96780 0.99200 1.19842 0.93522 0.95610 1.03383 1.20715 1.00466 0.93299 1.02089 1.20926 1.00795 0.90105 0.97129 1.19451 0.90294 0.96137 1.04795 1.20216 0.88004 0.92305 0.97424 0.92859 1.21692 1.00795 1.01020 0.95122 1.60817 1.17119 1.10211 1.44086 1.21999 0.96206 0.90736 0.96525 1.19544 0.91904 0.97374 0.95917 1.21082 0.99650 0.96082 1.39011 0.91126 1.25007 0.97405 0.96350 0.94680 1.69919 1.14746 1.28632 1.41109 0.86732 0.79822 0.84813 0.77625 1.20248 1.21558 1.18983 0.92873 0.88333 0.92870 0.85735 0.86182 0.91501 0.91370 0.91969 0.84032 0.92203 0.92361 0.92904 0.84618 0.91610 0.95972 0.96923 0.96070 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.92 9.64 -19.44 -0.19 -4.10 16 3 C 0.12 1.62 6.66 -39.22 -0.26 1.36 16 4 C -0.21 -2.28 9.04 -39.44 -0.36 -2.64 16 5 C -0.09 -0.95 9.69 -39.61 -0.38 -1.33 16 6 C -0.12 -1.42 5.88 -104.60 -0.62 -2.03 16 7 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 8 C -0.07 -0.95 8.52 -39.61 -0.34 -1.29 16 9 C -0.11 -1.51 5.00 -104.47 -0.52 -2.04 16 10 C 0.13 2.06 2.49 -68.86 -0.17 1.89 16 11 H 0.05 0.91 7.51 -51.93 -0.39 0.52 16 12 C -0.13 -1.91 9.39 37.16 0.35 -1.56 16 13 N -0.69 -12.19 5.61 -107.95 -0.61 -12.79 16 14 C 0.07 1.54 5.42 -3.83 -0.02 1.52 16 15 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 16 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 20 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 24 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.12 1.07 6.30 -52.48 -0.33 0.74 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.14 1.89 6.72 -52.49 -0.35 1.54 16 33 H 0.06 0.92 7.45 -51.92 -0.39 0.53 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.34 5.67 6.99 -39.29 -0.27 5.40 16 37 H 0.07 1.40 7.44 -51.93 -0.39 1.02 16 38 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16 39 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 40 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -32.09 332.34 -7.83 -39.92 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.64 Total: 1.54 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.52 Total: -19.50 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.17 Total: -40.39 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.19 Total: -4.10 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.09 -7.83 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161542576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.826 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds