Wall clock time and date at job start Mon Mar 30 2020 00:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38283 * 119.94357 * 2 1 4 4 C 1.38121 * 120.05715 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.03001 * 179.97438 * 4 3 2 6 6 C 1.38756 * 119.94446 * 359.97438 * 4 3 2 7 7 O 1.35901 * 120.05582 * 180.02562 * 6 4 3 8 8 C 1.38710 * 119.88279 * 359.97438 * 6 4 3 9 9 C 1.50706 * 120.02424 * 179.97438 * 8 6 4 10 10 N 1.46906 * 109.46929 * 80.00235 * 9 8 6 11 11 C 1.46898 * 110.99888 * 66.04676 * 10 9 8 12 12 C 1.46902 * 110.99573 * 190.00042 * 10 9 8 13 13 H 1.08990 * 109.47358 * 299.99539 * 12 10 9 14 14 C 1.52995 * 109.47407 * 60.00340 * 12 10 9 15 15 C 1.50707 * 109.46656 * 179.97438 * 12 10 9 16 16 H 1.07995 * 120.00358 * 0.02562 * 15 12 10 17 17 C 1.37877 * 119.99768 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00203 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00034 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47133 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47175 * 119.99607 * 19 17 15 22 22 H 1.48492 * 109.47006 * 240.00090 * 19 17 15 23 23 C 1.38163 * 119.94995 * 0.25403 * 8 6 4 24 24 H 1.09005 * 109.46543 * 90.00403 * 1 2 3 25 25 H 1.08995 * 109.47199 * 209.99549 * 1 2 3 26 26 H 1.08996 * 109.47168 * 330.00414 * 1 2 3 27 27 H 1.08009 * 119.97151 * 359.97438 * 3 2 1 28 28 H 1.09007 * 109.47156 * 270.01931 * 5 4 3 29 29 H 1.08998 * 109.47431 * 30.01388 * 5 4 3 30 30 H 1.09002 * 109.47404 * 150.02130 * 5 4 3 31 31 H 0.96697 * 113.99368 * 269.97182 * 7 6 4 32 32 H 1.08998 * 109.46946 * 320.00462 * 9 8 6 33 33 H 1.09000 * 109.47319 * 200.00261 * 9 8 6 34 34 H 1.08997 * 109.47334 * 60.00212 * 11 10 9 35 35 H 1.09000 * 109.46674 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.47296 * 299.99911 * 11 10 9 37 37 H 1.09001 * 109.46892 * 299.99943 * 14 12 10 38 38 H 1.09003 * 109.47841 * 59.99225 * 14 12 10 39 39 H 1.09000 * 109.47719 * 179.97438 * 14 12 10 40 40 H 0.96997 * 120.00560 * 179.97438 * 18 17 15 41 41 H 1.07998 * 119.97106 * 179.74122 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2010 -0.0005 5 6 4.3301 2.5071 -0.0011 6 6 4.2735 0.0000 -0.0005 7 8 5.6325 0.0001 -0.0005 8 6 3.5787 -1.2005 0.0005 9 6 4.3303 -2.5068 0.0000 10 7 4.7845 -2.8109 1.3635 11 6 3.6440 -3.0644 2.2540 12 6 5.7174 -3.9458 1.3667 13 1 5.2201 -4.8260 0.9596 14 6 6.9370 -3.6059 0.5078 15 6 6.1611 -4.2272 2.7792 16 1 5.7872 -3.6238 3.5931 17 6 7.0435 -5.2558 3.0326 18 7 7.4977 -5.9917 2.0417 19 14 7.5930 -5.6052 4.7834 20 1 6.9411 -4.6432 5.7081 21 1 7.2061 -6.9895 5.1568 22 1 9.0679 -5.4609 4.8774 23 6 2.1971 -1.1979 -0.0037 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5137 27 1 1.6558 2.1328 -0.0004 28 1 4.5106 2.8220 -1.0290 29 1 3.7402 3.2660 0.5130 30 1 5.2831 2.3783 0.5120 31 1 6.0257 -0.0003 -0.8839 32 1 5.1931 -2.4292 -0.6616 33 1 3.6742 -3.3034 -0.3506 34 1 3.0717 -3.9127 1.8790 35 1 4.0086 -3.2864 3.2570 36 1 3.0057 -2.1815 2.2871 37 1 6.6164 -3.4020 -0.5138 38 1 7.4344 -2.7255 0.9150 39 1 7.6294 -4.4477 0.5105 40 1 8.1189 -6.7151 2.2198 41 1 1.6558 -2.1324 -0.0071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164290727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:44 Heat of formation + Delta-G solvation = -20.966756 kcal Electronic energy + Delta-G solvation = -20333.489188 eV Core-core repulsion = 17406.332373 eV Total energy + Delta-G solvation = -2927.156815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94868 -36.84284 -36.59983 -33.31399 -32.60948 -31.49808 -28.98499 -27.54921 -26.70334 -25.88838 -24.60244 -23.27360 -20.70267 -20.54225 -19.16199 -17.93291 -16.25491 -16.09166 -15.36300 -15.09831 -14.31331 -14.08588 -13.88574 -13.58653 -13.39279 -13.20211 -13.02472 -12.62384 -12.41897 -12.37854 -12.17261 -11.68754 -11.47878 -11.28351 -11.23874 -11.01199 -10.89778 -10.60230 -10.45717 -10.10849 -10.04881 -9.94403 -9.70630 -8.83090 -8.47459 -8.33458 -8.07056 -7.05393 -5.96511 -4.00076 1.45741 1.52587 3.32878 3.40500 3.45805 3.76029 4.45941 4.54846 4.86739 4.91736 5.02337 5.27784 5.35102 5.37859 5.38516 5.55610 5.58768 5.65652 5.78772 5.79955 5.88882 6.01321 6.07578 6.26312 6.33138 6.38167 6.45702 6.58688 6.70012 6.81816 6.88116 6.92793 7.07441 7.13600 7.22829 7.58414 7.79775 7.88781 8.05149 8.28947 8.39290 8.67394 9.06903 9.64522 11.10415 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026978 B = 0.005006 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.622413 B = 5591.465620 C = 5947.360178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.117 4.117 4 C -0.115 4.115 5 C -0.108 4.108 6 C 0.123 3.877 7 O -0.477 6.477 8 C -0.080 4.080 9 C 0.093 3.907 10 N -0.522 5.522 11 C 0.037 3.963 12 C 0.212 3.788 13 H -0.005 1.005 14 C -0.130 4.130 15 C -0.498 4.498 16 H 0.063 0.937 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.284 1.284 23 C -0.108 4.108 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.379 0.621 32 H 0.082 0.918 33 H 0.025 0.975 34 H 0.007 0.993 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.006 0.994 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.259 0.741 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 12.886 -7.163 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.135 4.135 4 C -0.116 4.116 5 C -0.165 4.165 6 C 0.077 3.923 7 O -0.285 6.285 8 C -0.082 4.082 9 C -0.035 4.035 10 N -0.246 5.246 11 C -0.111 4.111 12 C 0.106 3.894 13 H 0.013 0.987 14 C -0.188 4.188 15 C -0.537 4.537 16 H 0.082 0.918 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.127 4.127 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.234 0.766 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.026 0.974 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.830 13.120 -6.388 17.594 hybrid contribution -0.030 -1.036 0.130 1.045 sum -9.860 12.084 -6.258 16.804 Atomic orbital electron populations 1.20729 0.91464 1.02520 1.01896 1.19793 0.95797 0.93018 1.01270 1.20669 0.92895 0.97308 1.02639 1.20170 0.93961 0.95086 1.02348 1.20640 1.00611 0.93474 1.01784 1.18061 0.83234 0.90774 1.00205 1.84939 1.15345 1.96188 1.32050 1.20360 0.93478 0.95613 0.98706 1.20946 0.97444 0.91156 0.93927 1.62125 1.14460 1.43025 1.05005 1.22232 0.92493 0.97270 0.99154 1.19256 0.88625 0.85150 0.96330 0.98701 1.21818 1.00500 1.01830 0.94620 1.21200 1.25972 1.14222 0.92311 0.91846 1.24924 0.96220 0.96033 0.97116 1.69904 1.32790 1.20205 1.30544 0.86475 0.78432 0.77873 0.84848 1.19764 1.21219 1.21042 1.20834 0.93182 0.97433 1.01228 0.91572 0.91679 0.91858 0.86372 0.91786 0.91952 0.90767 0.76619 0.89966 0.95645 0.97445 0.90577 0.93857 0.97546 0.94373 0.89857 0.93133 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.10 -1.28 5.88 -104.60 -0.62 -1.89 16 3 C -0.12 -1.48 9.35 -39.61 -0.37 -1.85 16 4 C -0.12 -1.59 5.89 -104.48 -0.62 -2.20 16 5 C -0.11 -1.20 9.79 36.00 0.35 -0.85 16 6 C 0.12 1.96 6.65 -39.22 -0.26 1.70 16 7 O -0.48 -7.64 11.79 -19.43 -0.23 -7.87 16 8 C -0.08 -1.35 4.58 -104.47 -0.48 -1.83 16 9 C 0.09 1.78 4.57 -4.97 -0.02 1.76 16 10 N -0.52 -11.81 4.61 -237.73 -1.10 -12.91 16 11 C 0.04 0.79 9.00 60.06 0.54 1.33 16 12 C 0.21 5.51 2.06 -68.86 -0.14 5.37 16 13 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 14 C -0.13 -3.23 8.76 37.15 0.33 -2.90 16 15 C -0.50 -14.01 7.88 -34.44 -0.27 -14.29 16 16 H 0.06 1.80 6.41 -52.49 -0.34 1.47 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -25.87 11.32 55.43 0.63 -25.24 16 19 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.11 -1.60 8.40 -39.61 -0.33 -1.93 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 28 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.07 0.90 7.53 -51.93 -0.39 0.50 16 31 H 0.38 4.31 9.06 45.56 0.41 4.72 16 32 H 0.08 1.56 5.54 -51.93 -0.29 1.28 16 33 H 0.03 0.48 7.98 -51.93 -0.41 0.07 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.08 1.72 6.10 -51.93 -0.32 1.40 16 36 H 0.04 0.84 6.66 -51.93 -0.35 0.49 16 37 H 0.01 0.13 6.20 -51.93 -0.32 -0.20 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.12 1.66 8.03 -52.49 -0.42 1.24 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -31.16 327.64 -8.08 -39.24 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.67 Total: 1.86 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.62 Total: -16.76 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.47 Total: -38.16 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.23 Total: -7.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.16 -8.08 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164290727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.270 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds