Wall clock time and date at job start Mon Mar 30 2020 00:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38288 * 119.94172 * 2 1 4 4 C 1.38125 * 120.05760 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.03191 * 179.97438 * 4 3 2 6 6 C 1.38752 * 119.93959 * 359.97438 * 4 3 2 7 7 O 1.35904 * 120.05094 * 179.72541 * 6 4 3 8 8 C 1.38709 * 119.89421 * 359.97438 * 6 4 3 9 9 C 1.50693 * 120.03142 * 179.97438 * 8 6 4 10 10 N 1.46901 * 109.47461 * 285.76767 * 9 8 6 11 11 C 1.46897 * 111.00143 * 291.70008 * 10 9 8 12 12 C 1.46894 * 111.00224 * 167.73919 * 10 9 8 13 13 H 1.08999 * 109.47458 * 60.00454 * 12 10 9 14 14 C 1.53001 * 109.47453 * 300.00424 * 12 10 9 15 15 C 1.50707 * 109.47377 * 179.97438 * 12 10 9 16 16 H 1.08000 * 119.99775 * 0.02562 * 15 12 10 17 17 C 1.37872 * 119.99943 * 180.02562 * 15 12 10 18 18 N 1.31507 * 120.00633 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99710 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.46961 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47131 * 120.00191 * 19 17 15 22 22 H 1.48498 * 109.47139 * 240.00230 * 19 17 15 23 23 C 1.38169 * 119.94018 * 0.02562 * 8 6 4 24 24 H 1.09005 * 109.47119 * 90.00390 * 1 2 3 25 25 H 1.09003 * 109.47021 * 210.00051 * 1 2 3 26 26 H 1.09000 * 109.47302 * 330.00166 * 1 2 3 27 27 H 1.08001 * 119.97269 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47021 * 270.02461 * 5 4 3 29 29 H 1.09003 * 109.46604 * 30.01734 * 5 4 3 30 30 H 1.08996 * 109.47344 * 150.01845 * 5 4 3 31 31 H 0.96698 * 114.00307 * 85.35640 * 7 6 4 32 32 H 1.08998 * 109.47190 * 45.76707 * 9 8 6 33 33 H 1.09001 * 109.47097 * 165.76752 * 9 8 6 34 34 H 1.09003 * 109.47099 * 54.26590 * 11 10 9 35 35 H 1.08993 * 109.47535 * 174.27278 * 11 10 9 36 36 H 1.09008 * 109.46812 * 294.26885 * 11 10 9 37 37 H 1.09002 * 109.46919 * 180.02562 * 14 12 10 38 38 H 1.09000 * 109.46735 * 299.99646 * 14 12 10 39 39 H 1.08997 * 109.47017 * 60.00081 * 14 12 10 40 40 H 0.96996 * 120.00340 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.97121 * 179.97438 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2011 0.0005 5 6 4.3300 2.5073 0.0000 6 6 4.2734 0.0001 0.0016 7 8 5.6324 0.0002 -0.0035 8 6 3.5788 -1.2005 0.0027 9 6 4.3304 -2.5066 0.0033 10 7 4.9003 -2.7443 -1.3296 11 6 3.8429 -3.0042 -2.3157 12 6 5.8726 -3.8449 -1.2979 13 1 5.3787 -4.7565 -0.9615 14 6 7.0081 -3.4948 -0.3341 15 6 6.4342 -4.0593 -2.6799 16 1 6.1022 -3.4396 -3.4997 17 6 7.3716 -5.0466 -2.8976 18 7 7.7754 -5.8016 -1.8994 19 14 8.0681 -5.3118 -4.6105 20 1 7.4553 -4.3388 -5.5501 21 1 9.5395 -5.1131 -4.5828 22 1 7.7636 -6.6940 -5.0601 23 6 2.1971 -1.1978 0.0021 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6558 2.1328 -0.0004 28 1 4.5113 2.8218 -1.0279 29 1 3.7397 3.2663 0.5133 30 1 5.2826 2.3787 0.5139 31 1 6.0291 0.0745 0.8753 32 1 5.1332 -2.4635 0.7392 33 1 3.6483 -3.3182 0.2567 34 1 3.1197 -2.1888 -2.2963 35 1 4.2831 -3.0758 -3.3102 36 1 3.3412 -3.9408 -2.0721 37 1 7.7298 -4.3114 -0.3109 38 1 7.5021 -2.5833 -0.6706 39 1 6.6017 -3.3401 0.6654 40 1 8.4347 -6.4964 -2.0527 41 1 1.6558 -2.1324 0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164290870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:46 Heat of formation + Delta-G solvation = -20.753103 kcal Electronic energy + Delta-G solvation = -20351.490926 eV Core-core repulsion = 17424.343376 eV Total energy + Delta-G solvation = -2927.147550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.93251 -36.83019 -36.57339 -33.30073 -32.59912 -31.50487 -28.98332 -27.55207 -26.67817 -25.88485 -24.59094 -23.26726 -20.70265 -20.52669 -19.14746 -17.92348 -16.23636 -16.07106 -15.38615 -15.08280 -14.31800 -14.00847 -13.86901 -13.55404 -13.41963 -13.22499 -12.98115 -12.63018 -12.41283 -12.36757 -12.17196 -11.69295 -11.46196 -11.30246 -11.23899 -11.02033 -10.89483 -10.59655 -10.44366 -10.08868 -10.02721 -9.95033 -9.69628 -8.83215 -8.46021 -8.32751 -8.05593 -7.03588 -5.95717 -3.99179 1.47176 1.53238 3.33273 3.40877 3.46265 3.77809 4.46603 4.56761 4.86472 4.90932 5.02240 5.28004 5.33958 5.37217 5.38466 5.57669 5.59224 5.67244 5.79092 5.80751 5.87773 6.00063 6.08598 6.25944 6.32385 6.38564 6.47410 6.58588 6.70338 6.81953 6.88342 6.93367 7.08510 7.14472 7.23566 7.59260 7.80713 7.89909 8.08675 8.30014 8.40395 8.68726 9.07940 9.65473 11.11231 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027317 B = 0.005013 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.753511 B = 5583.762949 C = 5911.003231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.104 4.104 6 C 0.125 3.875 7 O -0.473 6.473 8 C -0.079 4.079 9 C 0.093 3.907 10 N -0.521 5.521 11 C 0.040 3.960 12 C 0.213 3.787 13 H -0.005 1.005 14 C -0.130 4.130 15 C -0.498 4.498 16 H 0.063 0.937 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.286 1.286 23 C -0.110 4.110 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.377 0.623 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.009 0.991 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.006 0.994 40 H 0.259 0.741 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 12.566 6.783 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.135 4.135 4 C -0.119 4.119 5 C -0.160 4.160 6 C 0.080 3.920 7 O -0.281 6.281 8 C -0.080 4.080 9 C -0.035 4.035 10 N -0.245 5.245 11 C -0.109 4.109 12 C 0.107 3.893 13 H 0.012 0.988 14 C -0.188 4.188 15 C -0.536 4.536 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.128 4.128 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.232 0.768 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.027 0.973 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.024 0.976 40 H 0.068 0.932 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.482 12.769 6.053 17.594 hybrid contribution 0.066 -0.967 -0.206 0.991 sum -10.415 11.802 5.847 16.791 Atomic orbital electron populations 1.20728 0.91482 1.02305 1.02071 1.19783 0.95772 0.93023 1.01363 1.20655 0.92887 0.97294 1.02666 1.20212 0.94038 0.95144 1.02507 1.20597 0.99648 0.93430 1.02364 1.18073 0.83345 0.90713 0.99905 1.85015 1.15122 1.95761 1.32180 1.20349 0.93357 0.95632 0.98706 1.20941 0.96773 0.91123 0.94668 1.62113 1.13963 1.45618 1.02813 1.22191 0.93557 0.96990 0.98167 1.19255 0.88304 0.85622 0.96133 0.98752 1.21820 1.00608 1.01775 0.94548 1.21200 1.22706 1.15910 0.93807 0.91884 1.24920 0.96528 0.95895 0.96955 1.69901 1.32026 1.21109 1.30445 0.86481 0.78842 0.77749 0.84580 1.19772 1.21060 1.21226 1.20837 0.93163 0.97425 1.01399 0.91449 0.91779 0.91929 0.86404 0.91251 0.92166 0.91576 0.76833 0.89910 0.95671 0.93975 0.90886 0.97277 0.89888 0.94327 0.97554 0.93151 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.00 0.36 -0.69 16 2 C -0.10 -1.28 5.88 -104.60 -0.62 -1.89 16 3 C -0.12 -1.48 9.35 -39.60 -0.37 -1.85 16 4 C -0.12 -1.64 5.89 -104.47 -0.62 -2.25 16 5 C -0.10 -1.15 9.79 36.01 0.35 -0.80 16 6 C 0.13 2.01 6.65 -39.22 -0.26 1.75 16 7 O -0.47 -7.71 11.90 -19.44 -0.23 -7.94 16 8 C -0.08 -1.33 4.52 -104.48 -0.47 -1.80 16 9 C 0.09 1.78 4.54 -4.98 -0.02 1.76 16 10 N -0.52 -11.79 4.60 -237.73 -1.09 -12.88 16 11 C 0.04 0.84 9.06 60.06 0.54 1.39 16 12 C 0.21 5.53 2.06 -68.86 -0.14 5.39 16 13 H -0.01 -0.14 8.14 -51.93 -0.42 -0.57 16 14 C -0.13 -3.22 8.78 37.16 0.33 -2.89 16 15 C -0.50 -14.02 7.95 -34.44 -0.27 -14.30 16 16 H 0.06 1.80 6.39 -52.49 -0.34 1.46 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -25.92 11.32 55.43 0.63 -25.29 16 19 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.11 -1.61 8.67 -39.61 -0.34 -1.96 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.69 7.54 -51.93 -0.39 0.30 16 31 H 0.38 4.38 9.06 45.56 0.41 4.79 16 32 H 0.08 1.58 5.63 -51.93 -0.29 1.29 16 33 H 0.03 0.48 7.90 -51.93 -0.41 0.07 16 34 H 0.04 0.81 6.70 -51.93 -0.35 0.46 16 35 H 0.07 1.65 6.30 -51.93 -0.33 1.32 16 36 H 0.01 0.19 8.14 -51.92 -0.42 -0.24 16 37 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.01 0.13 6.16 -51.93 -0.32 -0.19 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.12 1.63 8.00 -52.49 -0.42 1.21 16 LS Contribution 328.20 15.07 4.95 4.95 Total: -1.00 -31.24 328.20 -8.08 -39.31 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.68 Total: 1.69 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.63 Total: -16.63 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.47 Total: -38.18 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.23 Total: -7.94 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.24 -8.08 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164290870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.558 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds