Wall clock time and date at job start Mon Mar 30 2020 00:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38288 * 119.94172 * 2 1 4 4 C 1.38125 * 120.05760 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.03191 * 179.97438 * 4 3 2 6 6 C 1.38752 * 119.93959 * 359.97438 * 4 3 2 7 7 O 1.35904 * 120.05094 * 179.72541 * 6 4 3 8 8 C 1.38709 * 119.89421 * 359.97438 * 6 4 3 9 9 C 1.50693 * 120.03142 * 179.97438 * 8 6 4 10 10 N 1.46901 * 109.47461 * 285.76767 * 9 8 6 11 11 C 1.46897 * 111.00143 * 291.70008 * 10 9 8 12 12 C 1.46894 * 111.00224 * 167.73919 * 10 9 8 13 13 H 1.08999 * 109.47458 * 60.00454 * 12 10 9 14 14 C 1.53001 * 109.47453 * 300.00424 * 12 10 9 15 15 C 1.50707 * 109.47377 * 179.97438 * 12 10 9 16 16 H 1.08000 * 119.99775 * 0.02562 * 15 12 10 17 17 C 1.37872 * 119.99943 * 180.02562 * 15 12 10 18 18 N 1.31507 * 120.00633 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99710 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.46961 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47131 * 120.00191 * 19 17 15 22 22 H 1.48498 * 109.47139 * 240.00230 * 19 17 15 23 23 C 1.38169 * 119.94018 * 0.02562 * 8 6 4 24 24 H 1.09005 * 109.47119 * 90.00390 * 1 2 3 25 25 H 1.09003 * 109.47021 * 210.00051 * 1 2 3 26 26 H 1.09000 * 109.47302 * 330.00166 * 1 2 3 27 27 H 1.08001 * 119.97269 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47021 * 270.02461 * 5 4 3 29 29 H 1.09003 * 109.46604 * 30.01734 * 5 4 3 30 30 H 1.08996 * 109.47344 * 150.01845 * 5 4 3 31 31 H 0.96698 * 114.00307 * 85.35640 * 7 6 4 32 32 H 1.08998 * 109.47190 * 45.76707 * 9 8 6 33 33 H 1.09001 * 109.47097 * 165.76752 * 9 8 6 34 34 H 1.09003 * 109.47099 * 54.26590 * 11 10 9 35 35 H 1.08993 * 109.47535 * 174.27278 * 11 10 9 36 36 H 1.09008 * 109.46812 * 294.26885 * 11 10 9 37 37 H 1.09002 * 109.46919 * 180.02562 * 14 12 10 38 38 H 1.09000 * 109.46735 * 299.99646 * 14 12 10 39 39 H 1.08997 * 109.47017 * 60.00081 * 14 12 10 40 40 H 0.96996 * 120.00340 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.97121 * 179.97438 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2011 0.0005 5 6 4.3300 2.5073 0.0000 6 6 4.2734 0.0001 0.0016 7 8 5.6324 0.0002 -0.0035 8 6 3.5788 -1.2005 0.0027 9 6 4.3304 -2.5066 0.0033 10 7 4.9003 -2.7443 -1.3296 11 6 3.8429 -3.0042 -2.3157 12 6 5.8726 -3.8449 -1.2979 13 1 5.3787 -4.7565 -0.9615 14 6 7.0081 -3.4948 -0.3341 15 6 6.4342 -4.0593 -2.6799 16 1 6.1022 -3.4396 -3.4997 17 6 7.3716 -5.0466 -2.8976 18 7 7.7754 -5.8016 -1.8994 19 14 8.0681 -5.3118 -4.6105 20 1 7.4553 -4.3388 -5.5501 21 1 9.5395 -5.1131 -4.5828 22 1 7.7636 -6.6940 -5.0601 23 6 2.1971 -1.1978 0.0021 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6558 2.1328 -0.0004 28 1 4.5113 2.8218 -1.0279 29 1 3.7397 3.2663 0.5133 30 1 5.2826 2.3787 0.5139 31 1 6.0291 0.0745 0.8753 32 1 5.1332 -2.4635 0.7392 33 1 3.6483 -3.3182 0.2567 34 1 3.1197 -2.1888 -2.2963 35 1 4.2831 -3.0758 -3.3102 36 1 3.3412 -3.9408 -2.0721 37 1 7.7298 -4.3114 -0.3109 38 1 7.5021 -2.5833 -0.6706 39 1 6.6017 -3.3401 0.6654 40 1 8.4347 -6.4964 -2.0527 41 1 1.6558 -2.1324 0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164290870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:46 Heat of formation + Delta-G solvation = -41.088728 kcal Electronic energy + Delta-G solvation = -20352.372745 eV Core-core repulsion = 17424.343376 eV Total energy + Delta-G solvation = -2928.029369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07744 -38.58433 -37.69697 -35.08498 -33.77649 -32.88182 -30.92310 -28.83402 -27.93257 -26.97508 -26.51400 -24.98452 -22.08435 -21.69377 -20.84414 -19.07425 -18.35724 -17.30535 -16.98286 -16.44990 -15.83655 -15.67517 -15.46650 -14.82567 -14.60050 -14.30844 -14.20836 -13.89995 -13.85761 -13.50772 -13.43614 -13.09976 -12.98297 -12.82402 -12.73859 -12.65011 -12.34101 -12.22410 -12.05265 -11.99879 -11.93598 -11.60833 -11.13241 -10.87987 -10.52590 -9.53841 -9.14364 -8.87447 -8.11302 -6.22731 0.40284 0.42187 1.39780 1.41522 1.53747 2.41882 2.69260 3.16631 3.47236 3.52168 3.85186 3.93565 4.01747 4.33658 4.44792 4.47276 4.54941 4.64949 4.69960 4.72364 4.74914 4.83835 4.88678 4.93791 4.98602 5.03440 5.05982 5.10546 5.24018 5.26579 5.38316 5.49901 5.53329 5.65955 5.71891 5.73985 5.81374 6.06198 6.27007 6.41649 6.75103 6.91797 7.04457 7.46168 8.94830 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027317 B = 0.005013 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.753511 B = 5583.762949 C = 5911.003231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.113 4.113 4 C -0.123 4.123 5 C -0.102 4.102 6 C 0.106 3.894 7 O -0.494 6.494 8 C -0.103 4.103 9 C 0.099 3.901 10 N -0.528 5.528 11 C 0.048 3.952 12 C 0.217 3.783 13 H -0.040 1.040 14 C -0.114 4.114 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.960 3.040 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.119 4.119 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.392 0.608 32 H 0.077 0.923 33 H 0.023 0.977 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.006 0.994 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 14.457 6.663 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.123 4.123 5 C -0.159 4.159 6 C 0.060 3.940 7 O -0.305 6.305 8 C -0.104 4.104 9 C -0.029 4.029 10 N -0.252 5.252 11 C -0.101 4.101 12 C 0.111 3.889 13 H -0.023 1.023 14 C -0.172 4.172 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.205 1.205 23 C -0.138 4.138 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.167 0.833 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.249 0.751 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.876 14.671 5.950 19.791 hybrid contribution 0.427 -1.499 -0.106 1.562 sum -11.449 13.172 5.843 18.405 Atomic orbital electron populations 1.20791 0.88964 1.03715 1.02948 1.20156 0.97592 0.92297 0.99703 1.21076 0.92568 0.98539 1.00935 1.20512 0.94820 0.95312 1.01667 1.20643 0.99980 0.92700 1.02535 1.18292 0.83254 0.91432 1.00980 1.84955 1.15760 1.95891 1.33889 1.20195 0.94187 0.94476 1.01563 1.20868 0.96710 0.92793 0.92489 1.62042 1.14490 1.43694 1.05022 1.22096 0.93404 0.97671 0.96902 1.19060 0.89125 0.85396 0.95364 1.02280 1.21594 0.99666 1.00189 0.95736 1.21426 1.23281 1.16226 0.94596 0.92780 1.25689 0.96733 0.95538 1.00701 1.70019 1.32325 1.21408 1.32259 0.85480 0.78147 0.77790 0.80045 1.19499 1.20435 1.20481 1.20964 0.92436 0.98673 1.01724 0.90684 0.91162 0.89848 0.83292 0.91563 0.89595 0.91390 0.75069 0.90507 0.95892 0.91883 0.92685 0.97538 0.92293 0.95032 0.95158 0.92919 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.24 0.71 -0.99 16 2 C -0.10 -2.24 5.88 -19.85 -0.12 -2.36 16 3 C -0.11 -2.50 9.35 22.25 0.21 -2.29 16 4 C -0.12 -3.12 5.89 -19.77 -0.12 -3.24 16 5 C -0.10 -2.01 9.79 71.24 0.70 -1.32 16 6 C 0.11 3.32 6.65 22.51 0.15 3.47 16 7 O -0.49 -16.07 11.90 -92.47 -1.10 -17.17 16 8 C -0.10 -3.43 4.52 -19.77 -0.09 -3.52 16 9 C 0.10 3.85 4.54 85.55 0.39 4.24 16 10 N -0.53 -24.42 4.60 -906.06 -4.16 -28.59 16 11 C 0.05 2.07 9.06 127.69 1.16 3.22 16 12 C 0.22 11.66 2.06 44.17 0.09 11.75 16 13 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 14 C -0.11 -5.80 8.78 71.98 0.63 -5.17 16 15 C -0.52 -29.82 7.95 25.60 0.20 -29.62 16 16 H 0.05 3.15 6.39 -2.91 -0.02 3.14 16 17 C 0.01 0.67 5.30 84.65 0.45 1.12 16 18 N -0.92 -54.24 11.32 21.44 0.24 -53.99 16 19 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 C -0.12 -3.37 8.67 22.25 0.19 -3.17 16 24 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 26 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 27 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 30 H 0.07 1.30 7.54 -2.39 -0.02 1.29 16 31 H 0.39 9.12 9.06 -74.06 -0.67 8.45 16 32 H 0.08 3.00 5.63 -2.39 -0.01 2.99 16 33 H 0.02 0.89 7.90 -2.39 -0.02 0.87 16 34 H 0.06 2.42 6.70 -2.39 -0.02 2.41 16 35 H 0.05 2.54 6.30 -2.39 -0.02 2.52 16 36 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 37 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 38 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.03 1.35 6.16 -2.39 -0.01 1.33 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.12 3.26 8.00 -2.91 -0.02 3.23 16 Total: -1.00 -67.61 328.20 1.91 -65.70 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.35 Total: 14.75 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 4.56 Total: -27.86 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -3.92 Total: -82.58 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.10 Total: -17.17 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.61 1.91 -65.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164290870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.615 kcal (2) G-P(sol) polarization free energy of solvation -67.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds