Wall clock time and date at job start Sun Mar 29 2020 23:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99899 * 2 1 4 4 H 1.48506 * 109.47035 * 270.00400 * 3 2 1 5 5 H 1.48504 * 109.47096 * 30.00106 * 3 2 1 6 6 H 1.48498 * 109.47259 * 149.99819 * 3 2 1 7 7 C 1.37875 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99976 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99950 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46624 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99839 * 90.00768 * 10 9 7 12 12 C 1.52991 * 109.47537 * 89.99385 * 11 10 9 13 13 C 1.53005 * 117.49966 * 243.74363 * 12 11 10 14 14 C 1.53001 * 117.49982 * 175.08809 * 12 11 10 15 15 C 1.34776 * 119.99985 * 269.99046 * 10 9 7 16 16 O 1.21277 * 120.00157 * 0.02562 * 15 10 9 17 17 C 1.50700 * 120.00037 * 180.02562 * 15 10 9 18 18 H 1.09005 * 115.54946 * 328.73275 * 17 15 10 19 19 C 1.52995 * 117.49995 * 183.06287 * 17 15 10 20 20 C 1.52999 * 117.49813 * 114.39957 * 17 15 10 21 21 H 1.09000 * 117.49973 * 214.98246 * 20 17 15 22 22 C 1.52998 * 117.49662 * 0.02562 * 20 17 15 23 23 C 1.53001 * 117.49755 * 253.73200 * 22 20 17 24 24 C 1.52994 * 60.00262 * 252.51388 * 23 22 20 25 25 H 0.96998 * 119.99983 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46853 * 60.00100 * 9 7 2 27 27 H 1.08995 * 109.46889 * 299.99859 * 9 7 2 28 28 H 1.09003 * 109.46659 * 209.99532 * 11 10 9 29 29 H 1.08999 * 109.46832 * 329.98524 * 11 10 9 30 30 H 1.08999 * 115.55098 * 29.41661 * 12 11 10 31 31 H 1.09002 * 117.49772 * 0.02562 * 13 12 11 32 32 H 1.08997 * 117.49961 * 145.01833 * 13 12 11 33 33 H 1.08997 * 117.50280 * 214.97867 * 14 12 11 34 34 H 1.09007 * 117.50120 * 359.97239 * 14 12 11 35 35 H 1.08995 * 117.50318 * 0.02562 * 19 17 15 36 36 H 1.09004 * 117.49976 * 145.00467 * 19 17 15 37 37 H 1.08994 * 115.55181 * 39.44151 * 22 20 17 38 38 H 1.09007 * 117.49556 * 0.02562 * 23 22 20 39 39 H 1.08995 * 117.49972 * 145.01992 * 23 22 20 40 40 H 1.09005 * 117.50054 * 252.51187 * 24 23 22 41 41 H 1.09004 * 117.50421 * 107.48993 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6791 -4.1694 1.2693 12 6 1.7484 -5.3006 1.7109 13 6 0.9697 -5.1068 3.0136 14 6 2.1409 -6.0909 2.9608 15 6 2.6410 -4.1249 -1.1667 16 8 2.2471 -3.6638 -2.2170 17 6 3.6199 -5.2706 -1.1667 18 1 4.3134 -5.2965 -0.3260 19 6 4.1340 -5.7605 -2.5218 20 6 3.1392 -6.6105 -1.7274 21 1 3.5167 -7.5179 -1.2559 22 6 1.7016 -6.6845 -2.2457 23 6 0.6794 -7.4338 -1.3887 24 6 1.1821 -8.0517 -2.6949 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.6886 -4.5593 1.1389 29 1 2.6869 -3.3877 2.0289 30 1 1.2549 -5.8447 0.9057 31 1 1.1201 -4.1732 3.5558 32 1 -0.0360 -5.5238 3.0655 33 1 1.9052 -7.1550 2.9781 34 1 3.0624 -5.8053 3.4682 35 1 3.7646 -5.2540 -3.4134 36 1 5.1656 -6.1089 -2.5728 37 1 1.3539 -5.8090 -2.7940 38 1 1.0310 -7.8738 -0.4554 39 1 -0.3411 -7.0512 -1.3729 40 1 0.4923 -8.0756 -3.5387 41 1 1.8645 -8.8984 -2.6214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:48 Heat of formation + Delta-G solvation = 35.663692 kcal Electronic energy + Delta-G solvation = -20482.962581 eV Core-core repulsion = 17558.261447 eV Total energy + Delta-G solvation = -2924.701134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70235 -37.66667 -36.91939 -34.86395 -34.20862 -32.47027 -28.07751 -26.15886 -24.42645 -23.52573 -22.31068 -22.15694 -21.62078 -20.58063 -20.18555 -17.90365 -16.68251 -16.42982 -15.89911 -15.38671 -14.87525 -14.43081 -14.35456 -14.06955 -13.55161 -13.27378 -12.70534 -12.27946 -12.15891 -11.71822 -11.55863 -11.38094 -11.33220 -11.27551 -11.18313 -11.00460 -10.87367 -10.65147 -10.49833 -10.26654 -10.06970 -9.85422 -9.66701 -9.57285 -9.32153 -8.79513 -8.40083 -7.59732 -6.01075 -4.05550 3.18254 3.32868 3.38846 3.41305 3.82880 3.84346 4.10568 4.38388 4.47232 4.64046 4.85457 5.00893 5.05006 5.12638 5.13526 5.30319 5.33052 5.40539 5.41098 5.44740 5.49400 5.69080 5.72882 5.78013 5.91498 5.94698 5.95237 6.07442 6.11054 6.17720 6.20250 6.30918 6.36037 6.52969 6.55719 7.15419 7.49985 7.61736 7.96155 8.27921 8.50797 8.94682 9.18732 9.59581 11.06890 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.006417 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.570108 B = 4362.198114 C = 5110.166571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.249 3.751 10 N -0.589 5.589 11 C 0.144 3.856 12 C -0.162 4.162 13 C -0.176 4.176 14 C -0.182 4.182 15 C 0.540 3.460 16 O -0.543 6.543 17 C -0.182 4.182 18 H 0.117 0.883 19 C -0.147 4.147 20 C -0.094 4.094 21 H 0.106 0.894 22 C -0.124 4.124 23 C -0.176 4.176 24 C -0.178 4.178 25 H 0.262 0.738 26 H 0.041 0.959 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 -15.913 2.482 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.130 3.870 10 N -0.319 5.319 11 C 0.019 3.981 12 C -0.181 4.181 13 C -0.213 4.213 14 C -0.220 4.220 15 C 0.327 3.673 16 O -0.421 6.421 17 C -0.203 4.203 18 H 0.135 0.865 19 C -0.185 4.185 20 C -0.112 4.112 21 H 0.124 0.876 22 C -0.142 4.142 23 C -0.213 4.213 24 C -0.215 4.215 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.827 -15.498 1.942 16.348 hybrid contribution 0.444 0.974 0.253 1.100 sum 5.271 -14.524 2.195 15.606 Atomic orbital electron populations 1.69936 1.05966 1.26902 1.50607 1.24924 0.94860 0.99140 0.95156 0.86524 0.79671 0.83162 0.78214 1.20570 1.21176 1.19951 1.21457 0.93326 0.90763 1.50844 0.92542 1.19243 0.87433 0.82026 0.98327 1.48066 1.45429 1.34547 1.03832 1.21010 0.95409 0.94207 0.87463 1.22913 1.02809 1.00628 0.91775 1.23005 0.96076 1.01015 1.01235 1.22907 0.99633 0.97148 1.02310 1.19264 0.81399 0.82558 0.84089 1.90637 1.58633 1.61678 1.31134 1.22458 1.02665 0.95690 0.99506 0.86488 1.22993 0.98322 1.02004 0.95141 1.21669 0.93771 0.93088 1.02708 0.87594 1.21856 0.92514 0.96370 1.03471 1.22887 0.99298 1.04324 0.94819 1.22900 1.03761 0.96446 0.98393 0.92788 0.94068 0.94957 0.91256 0.90091 0.87618 0.88555 0.89266 0.89319 0.89004 0.87466 0.88462 0.86524 0.88987 0.88896 0.89009 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.06 9.39 -34.44 -0.32 -15.39 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 10 N -0.59 -12.60 2.46 -175.06 -0.43 -13.03 16 11 C 0.14 2.40 5.52 -4.05 -0.02 2.38 16 12 C -0.16 -2.33 6.01 -90.62 -0.54 -2.88 16 13 C -0.18 -2.36 10.18 -26.69 -0.27 -2.64 16 14 C -0.18 -2.08 10.25 -26.70 -0.27 -2.36 16 15 C 0.54 11.38 6.57 -10.99 -0.07 11.31 16 16 O -0.54 -13.71 14.72 5.56 0.08 -13.63 16 17 C -0.18 -2.84 5.35 -91.77 -0.49 -3.33 16 18 H 0.12 1.58 6.33 -51.93 -0.33 1.26 16 19 C -0.15 -2.04 9.77 -26.69 -0.26 -2.30 16 20 C -0.09 -1.24 5.85 -90.58 -0.53 -1.77 16 21 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 22 C -0.12 -1.78 5.07 -90.62 -0.46 -2.24 16 23 C -0.18 -2.23 10.03 -26.73 -0.27 -2.49 16 24 C -0.18 -2.05 10.25 -26.73 -0.27 -2.32 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 27 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.07 0.99 5.95 -51.93 -0.31 0.69 16 29 H 0.08 1.42 7.81 -51.93 -0.41 1.01 16 30 H 0.11 1.62 7.92 -51.93 -0.41 1.21 16 31 H 0.10 1.34 8.03 -51.93 -0.42 0.92 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 35 H 0.11 1.70 7.67 -51.93 -0.40 1.30 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.12 2.08 6.86 -51.93 -0.36 1.73 16 38 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -32.09 341.63 -10.18 -42.27 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.78 Total: 4.09 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -3.92 Total: -15.81 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.31 Total: -39.15 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.09 -10.18 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.935 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds