Wall clock time and date at job start Sun Mar 29 2020 23:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99899 * 2 1 4 4 H 1.48506 * 109.47035 * 270.00400 * 3 2 1 5 5 H 1.48504 * 109.47096 * 30.00106 * 3 2 1 6 6 H 1.48498 * 109.47259 * 149.99819 * 3 2 1 7 7 C 1.37875 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99976 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99950 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46624 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99839 * 90.00768 * 10 9 7 12 12 C 1.52991 * 109.47537 * 89.99385 * 11 10 9 13 13 C 1.53005 * 117.49966 * 243.74363 * 12 11 10 14 14 C 1.53001 * 117.49982 * 175.08809 * 12 11 10 15 15 C 1.34776 * 119.99985 * 269.99046 * 10 9 7 16 16 O 1.21277 * 120.00157 * 0.02562 * 15 10 9 17 17 C 1.50700 * 120.00037 * 180.02562 * 15 10 9 18 18 H 1.09005 * 115.54946 * 328.73275 * 17 15 10 19 19 C 1.52995 * 117.49995 * 183.06287 * 17 15 10 20 20 C 1.52999 * 117.49813 * 114.39957 * 17 15 10 21 21 H 1.09000 * 117.49973 * 214.98246 * 20 17 15 22 22 C 1.52998 * 117.49662 * 0.02562 * 20 17 15 23 23 C 1.53001 * 117.49755 * 253.73200 * 22 20 17 24 24 C 1.52994 * 60.00262 * 252.51388 * 23 22 20 25 25 H 0.96998 * 119.99983 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46853 * 60.00100 * 9 7 2 27 27 H 1.08995 * 109.46889 * 299.99859 * 9 7 2 28 28 H 1.09003 * 109.46659 * 209.99532 * 11 10 9 29 29 H 1.08999 * 109.46832 * 329.98524 * 11 10 9 30 30 H 1.08999 * 115.55098 * 29.41661 * 12 11 10 31 31 H 1.09002 * 117.49772 * 0.02562 * 13 12 11 32 32 H 1.08997 * 117.49961 * 145.01833 * 13 12 11 33 33 H 1.08997 * 117.50280 * 214.97867 * 14 12 11 34 34 H 1.09007 * 117.50120 * 359.97239 * 14 12 11 35 35 H 1.08995 * 117.50318 * 0.02562 * 19 17 15 36 36 H 1.09004 * 117.49976 * 145.00467 * 19 17 15 37 37 H 1.08994 * 115.55181 * 39.44151 * 22 20 17 38 38 H 1.09007 * 117.49556 * 0.02562 * 23 22 20 39 39 H 1.08995 * 117.49972 * 145.01992 * 23 22 20 40 40 H 1.09005 * 117.50054 * 252.51187 * 24 23 22 41 41 H 1.09004 * 117.50421 * 107.48993 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6791 -4.1694 1.2693 12 6 1.7484 -5.3006 1.7109 13 6 0.9697 -5.1068 3.0136 14 6 2.1409 -6.0909 2.9608 15 6 2.6410 -4.1249 -1.1667 16 8 2.2471 -3.6638 -2.2170 17 6 3.6199 -5.2706 -1.1667 18 1 4.3134 -5.2965 -0.3260 19 6 4.1340 -5.7605 -2.5218 20 6 3.1392 -6.6105 -1.7274 21 1 3.5167 -7.5179 -1.2559 22 6 1.7016 -6.6845 -2.2457 23 6 0.6794 -7.4338 -1.3887 24 6 1.1821 -8.0517 -2.6949 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.6886 -4.5593 1.1389 29 1 2.6869 -3.3877 2.0289 30 1 1.2549 -5.8447 0.9057 31 1 1.1201 -4.1732 3.5558 32 1 -0.0360 -5.5238 3.0655 33 1 1.9052 -7.1550 2.9781 34 1 3.0624 -5.8053 3.4682 35 1 3.7646 -5.2540 -3.4134 36 1 5.1656 -6.1089 -2.5728 37 1 1.3539 -5.8090 -2.7940 38 1 1.0310 -7.8738 -0.4554 39 1 -0.3411 -7.0512 -1.3729 40 1 0.4923 -8.0756 -3.5387 41 1 1.8645 -8.8984 -2.6214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175992652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:47 Heat of formation + Delta-G solvation = 18.087391 kcal Electronic energy + Delta-G solvation = -20483.724747 eV Core-core repulsion = 17558.261447 eV Total energy + Delta-G solvation = -2925.463300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17167 -38.86666 -38.19517 -36.20495 -35.78412 -34.57498 -30.05936 -27.64898 -26.17085 -24.71318 -23.54253 -23.13911 -23.04871 -21.78340 -21.34001 -19.40973 -18.64306 -18.02290 -17.36929 -16.81535 -16.28804 -16.12288 -15.68832 -15.33711 -14.77152 -14.70307 -14.30722 -14.07903 -13.60135 -13.37205 -13.12625 -12.84675 -12.64999 -12.59719 -12.45285 -12.30318 -12.27559 -12.22997 -12.08546 -11.72916 -11.61886 -11.25403 -10.94845 -10.83461 -10.66415 -10.51245 -10.33285 -9.40446 -8.23901 -6.39424 1.33855 1.37389 1.47089 1.73024 2.27203 2.42393 2.67412 2.99975 3.05196 3.28730 3.52725 3.67939 3.89896 3.96933 4.00990 4.06816 4.22033 4.27955 4.34201 4.35821 4.38189 4.53800 4.66309 4.77415 4.84618 4.87837 4.90451 4.98448 5.02464 5.08069 5.10642 5.21839 5.25499 5.27346 5.33593 5.37179 5.42268 5.57426 5.87519 6.05508 6.68823 6.84071 7.27105 7.54410 8.83101 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.006417 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.570108 B = 4362.198114 C = 5110.166571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.269 3.731 10 N -0.595 5.595 11 C 0.142 3.858 12 C -0.179 4.179 13 C -0.195 4.195 14 C -0.140 4.140 15 C 0.530 3.470 16 O -0.601 6.601 17 C -0.194 4.194 18 H 0.148 0.852 19 C -0.144 4.144 20 C -0.067 4.067 21 H 0.151 0.849 22 C -0.156 4.156 23 C -0.176 4.176 24 C -0.151 4.151 25 H 0.267 0.733 26 H -0.010 1.010 27 H 0.018 0.982 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.138 0.862 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 -18.349 3.981 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.147 3.853 10 N -0.324 5.324 11 C 0.019 3.981 12 C -0.198 4.198 13 C -0.232 4.232 14 C -0.177 4.177 15 C 0.320 3.680 16 O -0.483 6.483 17 C -0.215 4.215 18 H 0.166 0.834 19 C -0.182 4.182 20 C -0.085 4.085 21 H 0.168 0.832 22 C -0.175 4.175 23 C -0.213 4.213 24 C -0.187 4.187 25 H 0.076 0.924 26 H 0.008 0.992 27 H 0.036 0.964 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.156 0.844 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.418 -17.969 3.478 19.749 hybrid contribution -0.456 1.729 -0.254 1.806 sum 6.963 -16.240 3.224 17.962 Atomic orbital electron populations 1.70062 1.07634 1.28140 1.51049 1.25885 0.95814 1.03121 0.94386 0.85410 0.78844 0.78311 0.78217 1.20642 1.19798 1.18467 1.21721 0.93207 0.92037 1.51203 0.92958 1.18610 0.87850 0.83785 0.95038 1.48053 1.44579 1.33536 1.06226 1.21246 0.97551 0.94507 0.84757 1.22691 1.03630 1.00992 0.92476 1.23068 0.97463 1.01878 1.00753 1.23019 0.98824 0.97703 0.98144 1.20287 0.81496 0.83381 0.82820 1.90600 1.60837 1.63768 1.33138 1.22402 1.02442 0.94819 1.01846 0.83412 1.23100 1.00576 1.01622 0.92875 1.21845 0.92598 0.93023 1.01027 0.83195 1.21745 0.94104 0.96345 1.05276 1.22935 0.98002 1.03945 0.96373 1.23005 1.03103 0.95130 0.97486 0.92413 0.99180 0.96380 0.88055 0.91516 0.88632 0.89673 0.88967 0.86876 0.87255 0.90718 0.84437 0.91649 0.86821 0.90616 0.88985 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -32.55 9.39 25.60 0.24 -32.31 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 15.24 5.16 85.63 0.44 15.68 16 10 N -0.60 -26.59 2.46 -826.17 -2.03 -28.62 16 11 C 0.14 4.68 5.52 86.38 0.48 5.16 16 12 C -0.18 -4.92 6.01 -10.79 -0.06 -4.99 16 13 C -0.19 -5.04 10.18 30.62 0.31 -4.73 16 14 C -0.14 -2.66 10.25 30.62 0.31 -2.35 16 15 C 0.53 23.29 6.57 87.66 0.58 23.87 16 16 O -0.60 -32.87 14.72 -3.02 -0.04 -32.91 16 17 C -0.19 -5.76 5.35 -11.54 -0.06 -5.83 16 18 H 0.15 3.43 6.33 -2.38 -0.02 3.41 16 19 C -0.14 -3.75 9.77 30.62 0.30 -3.45 16 20 C -0.07 -1.58 5.85 -10.77 -0.06 -1.64 16 21 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 22 C -0.16 -4.45 5.07 -10.79 -0.05 -4.51 16 23 C -0.18 -4.24 10.03 30.59 0.31 -3.93 16 24 C -0.15 -3.13 10.25 30.59 0.31 -2.81 16 25 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 26 H -0.01 -0.65 7.42 -2.39 -0.02 -0.67 16 27 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 28 H 0.10 2.64 5.95 -2.39 -0.01 2.63 16 29 H 0.07 2.36 7.81 -2.39 -0.02 2.34 16 30 H 0.10 2.86 7.92 -2.39 -0.02 2.84 16 31 H 0.08 2.37 8.03 -2.39 -0.02 2.35 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.07 2.45 7.67 -2.39 -0.02 2.43 16 36 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 2.56 6.86 -2.39 -0.02 2.54 16 38 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -76.93 341.63 4.73 -72.20 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 1.00 Total: 19.83 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 3.50 Total: -20.97 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.74 Total: -86.30 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.04 Total: -32.91 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -76.93 4.73 -72.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.292 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds