Wall clock time and date at job start Sun Mar 29 2020 23:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48509 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46900 * 300.00275 * 3 2 1 6 6 H 1.48499 * 109.47347 * 60.00325 * 3 2 1 7 7 C 1.37886 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99457 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46776 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99993 * 89.99916 * 10 9 7 12 12 C 1.53003 * 109.47329 * 270.00310 * 11 10 9 13 13 C 1.53001 * 117.51964 * 116.28255 * 12 11 10 14 14 C 1.52999 * 60.00190 * 107.47982 * 13 12 11 15 15 C 1.34773 * 120.00025 * 270.00315 * 10 9 7 16 16 O 1.21287 * 120.00169 * 359.97438 * 15 10 9 17 17 C 1.50706 * 119.99843 * 180.02562 * 15 10 9 18 18 H 1.08996 * 115.54978 * 34.32576 * 17 15 10 19 19 C 1.53007 * 117.49400 * 248.61915 * 17 15 10 20 20 C 1.53000 * 117.49787 * 179.97438 * 17 15 10 21 21 H 1.09005 * 117.49851 * 359.97438 * 20 17 15 22 22 C 1.52998 * 117.49927 * 214.97928 * 20 17 15 23 23 C 1.52998 * 117.50103 * 128.74804 * 22 20 17 24 24 C 1.52991 * 117.49994 * 60.08569 * 22 20 17 25 25 H 0.96998 * 119.99635 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47030 * 60.00371 * 9 7 2 27 27 H 1.08994 * 109.47611 * 299.99753 * 9 7 2 28 28 H 1.08999 * 109.47381 * 149.99796 * 11 10 9 29 29 H 1.09005 * 109.46933 * 29.99974 * 11 10 9 30 30 H 1.09002 * 115.54973 * 330.58039 * 12 11 10 31 31 H 1.09001 * 117.49733 * 214.97413 * 13 12 11 32 32 H 1.08995 * 117.49577 * 359.97438 * 13 12 11 33 33 H 1.09004 * 117.50150 * 252.51496 * 14 13 12 34 34 H 1.09004 * 117.49681 * 107.48417 * 14 13 12 35 35 H 1.08990 * 117.50149 * 0.02562 * 19 17 15 36 36 H 1.08999 * 117.49494 * 145.02178 * 19 17 15 37 37 H 1.09003 * 115.54467 * 274.41877 * 22 20 17 38 38 H 1.09001 * 117.49506 * 0.02562 * 23 22 20 39 39 H 1.09000 * 117.49786 * 145.02219 * 23 22 20 40 40 H 1.09000 * 117.50029 * 214.98167 * 24 22 20 41 41 H 1.08996 * 117.50105 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0018 11 6 2.6799 -4.1701 1.2663 12 6 3.9423 -3.4267 1.7074 13 6 3.8736 -2.6284 3.0108 14 6 4.6630 -3.9379 2.9566 15 6 2.6399 -4.1244 -1.1695 16 8 2.2448 -3.6633 -2.2194 17 6 3.6188 -5.2703 -1.1707 18 1 3.5029 -5.9884 -0.3590 19 6 5.0383 -4.9862 -1.6661 20 6 4.0764 -5.8070 -2.5284 21 1 3.6691 -5.3316 -3.4208 22 6 4.3372 -7.3103 -2.6424 23 6 3.6595 -8.0599 -3.7911 24 6 3.1679 -8.2540 -2.3546 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5572 0.8896 28 1 2.9080 -5.2279 1.1354 29 1 1.9070 -4.0565 2.0266 30 1 4.5560 -3.0234 0.9019 31 1 4.4421 -1.6998 3.0627 32 1 2.9287 -2.6323 3.5541 33 1 4.2375 -4.8035 3.4643 34 1 5.7509 -3.8708 2.9728 35 1 5.2642 -3.9706 -1.9907 36 1 5.8566 -5.5175 -1.1802 37 1 5.3335 -7.6383 -2.3457 38 1 3.0281 -7.4819 -4.4660 39 1 4.2097 -8.8813 -4.2500 40 1 3.3949 -9.2031 -1.8690 41 1 2.2129 -7.8040 -2.0836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:53 Heat of formation + Delta-G solvation = 35.859648 kcal Electronic energy + Delta-G solvation = -20192.717331 eV Core-core repulsion = 17268.024693 eV Total energy + Delta-G solvation = -2924.692637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.62766 -37.84145 -36.89991 -34.79396 -34.18849 -32.46264 -28.07515 -26.20312 -24.63225 -23.31653 -22.44720 -22.00098 -21.84235 -20.53017 -19.81392 -18.15495 -16.76648 -16.40308 -15.86553 -15.34871 -14.87724 -14.44583 -14.41266 -14.22671 -13.43720 -13.14274 -12.80195 -12.26660 -12.16144 -11.84533 -11.61432 -11.38760 -11.31908 -11.20955 -11.16390 -10.91861 -10.79316 -10.72234 -10.60154 -10.24772 -9.96764 -9.87096 -9.59086 -9.52008 -9.42906 -8.82776 -8.38909 -7.63443 -5.99738 -4.02433 3.19791 3.31434 3.39158 3.42669 3.62404 3.96026 4.17798 4.23332 4.47980 4.68417 4.86107 4.91149 5.02745 5.16811 5.20058 5.25161 5.35163 5.36621 5.40294 5.50528 5.54559 5.61012 5.77490 5.84590 5.87099 5.90066 5.94762 6.09635 6.11898 6.14499 6.25398 6.30013 6.44857 6.45098 6.67106 7.11176 7.47706 7.60203 7.97361 8.29161 8.46827 8.96290 9.15563 9.61701 11.08851 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.005849 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.721623 B = 4785.685191 C = 5569.633051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.246 3.754 10 N -0.591 5.591 11 C 0.147 3.853 12 C -0.149 4.149 13 C -0.165 4.165 14 C -0.190 4.190 15 C 0.534 3.466 16 O -0.543 6.543 17 C -0.176 4.176 18 H 0.118 0.882 19 C -0.144 4.144 20 C -0.099 4.099 21 H 0.117 0.883 22 C -0.122 4.122 23 C -0.176 4.176 24 C -0.178 4.178 25 H 0.261 0.739 26 H 0.042 0.958 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.466 -14.459 1.953 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.321 5.321 11 C 0.023 3.977 12 C -0.169 4.169 13 C -0.202 4.202 14 C -0.228 4.228 15 C 0.321 3.679 16 O -0.421 6.421 17 C -0.198 4.198 18 H 0.136 0.864 19 C -0.182 4.182 20 C -0.118 4.118 21 H 0.135 0.865 22 C -0.140 4.140 23 C -0.213 4.213 24 C -0.215 4.215 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.051 -14.068 1.409 16.787 hybrid contribution 0.481 1.103 0.243 1.228 sum 9.532 -12.965 1.652 16.176 Atomic orbital electron populations 1.69941 1.05949 1.26703 1.51112 1.24916 0.94818 0.99071 0.95391 0.86499 0.80029 0.83724 0.77508 1.19882 1.21009 1.21057 1.21427 0.93323 0.90416 1.49992 0.92364 1.19301 0.87366 0.82425 0.98193 1.48118 1.45012 1.35063 1.03907 1.21006 0.94216 0.95628 0.86896 1.22710 0.99322 1.03068 0.91777 1.22880 1.01724 0.94651 1.00964 1.22954 0.98600 0.98393 1.02856 1.19421 0.81465 0.82968 0.84081 1.90658 1.58224 1.61950 1.31222 1.22403 0.97281 1.00587 0.99484 0.86420 1.22960 0.91273 1.01580 1.02381 1.21796 1.02882 0.92243 0.94832 0.86498 1.21750 0.97062 0.91199 1.04028 1.22984 1.03960 1.02787 0.91610 1.22977 0.99066 1.00545 0.98925 0.92915 0.93990 0.95162 0.91304 0.90785 0.87853 0.89285 0.88835 0.89273 0.89454 0.88316 0.88327 0.87704 0.88578 0.89004 0.89024 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.45 9.39 -34.44 -0.32 -14.78 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.25 6.47 5.21 -5.19 -0.03 6.44 16 10 N -0.59 -12.58 2.46 -175.05 -0.43 -13.01 16 11 C 0.15 2.43 5.56 -4.04 -0.02 2.41 16 12 C -0.15 -2.38 6.01 -90.61 -0.54 -2.92 16 13 C -0.17 -2.52 10.18 -26.73 -0.27 -2.79 16 14 C -0.19 -2.39 10.25 -26.73 -0.27 -2.66 16 15 C 0.53 11.29 7.46 -10.98 -0.08 11.21 16 16 O -0.54 -13.92 15.84 5.55 0.09 -13.83 16 17 C -0.18 -2.73 4.93 -91.77 -0.45 -3.19 16 18 H 0.12 1.58 6.44 -51.93 -0.33 1.24 16 19 C -0.14 -1.97 9.96 -26.70 -0.27 -2.24 16 20 C -0.10 -1.39 5.38 -90.59 -0.49 -1.88 16 21 H 0.12 1.91 7.67 -51.93 -0.40 1.51 16 22 C -0.12 -1.36 5.87 -90.63 -0.53 -1.89 16 23 C -0.18 -1.82 10.25 -26.70 -0.27 -2.10 16 24 C -0.18 -1.88 10.18 -26.70 -0.27 -2.15 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 27 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 28 H 0.07 0.94 5.99 -51.93 -0.31 0.63 16 29 H 0.07 1.21 7.63 -51.93 -0.40 0.81 16 30 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -32.11 345.28 -10.20 -42.31 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.85 Total: 3.32 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.93 Total: -14.93 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.31 Total: -39.14 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.11 -10.20 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.165 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds