Wall clock time and date at job start Sun Mar 29 2020 23:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48509 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46900 * 300.00275 * 3 2 1 6 6 H 1.48499 * 109.47347 * 60.00325 * 3 2 1 7 7 C 1.37886 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99457 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46776 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99993 * 89.99916 * 10 9 7 12 12 C 1.53003 * 109.47329 * 270.00310 * 11 10 9 13 13 C 1.53001 * 117.51964 * 116.28255 * 12 11 10 14 14 C 1.52999 * 60.00190 * 107.47982 * 13 12 11 15 15 C 1.34773 * 120.00025 * 270.00315 * 10 9 7 16 16 O 1.21287 * 120.00169 * 359.97438 * 15 10 9 17 17 C 1.50706 * 119.99843 * 180.02562 * 15 10 9 18 18 H 1.08996 * 115.54978 * 34.32576 * 17 15 10 19 19 C 1.53007 * 117.49400 * 248.61915 * 17 15 10 20 20 C 1.53000 * 117.49787 * 179.97438 * 17 15 10 21 21 H 1.09005 * 117.49851 * 359.97438 * 20 17 15 22 22 C 1.52998 * 117.49927 * 214.97928 * 20 17 15 23 23 C 1.52998 * 117.50103 * 128.74804 * 22 20 17 24 24 C 1.52991 * 117.49994 * 60.08569 * 22 20 17 25 25 H 0.96998 * 119.99635 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47030 * 60.00371 * 9 7 2 27 27 H 1.08994 * 109.47611 * 299.99753 * 9 7 2 28 28 H 1.08999 * 109.47381 * 149.99796 * 11 10 9 29 29 H 1.09005 * 109.46933 * 29.99974 * 11 10 9 30 30 H 1.09002 * 115.54973 * 330.58039 * 12 11 10 31 31 H 1.09001 * 117.49733 * 214.97413 * 13 12 11 32 32 H 1.08995 * 117.49577 * 359.97438 * 13 12 11 33 33 H 1.09004 * 117.50150 * 252.51496 * 14 13 12 34 34 H 1.09004 * 117.49681 * 107.48417 * 14 13 12 35 35 H 1.08990 * 117.50149 * 0.02562 * 19 17 15 36 36 H 1.08999 * 117.49494 * 145.02178 * 19 17 15 37 37 H 1.09003 * 115.54467 * 274.41877 * 22 20 17 38 38 H 1.09001 * 117.49506 * 0.02562 * 23 22 20 39 39 H 1.09000 * 117.49786 * 145.02219 * 23 22 20 40 40 H 1.09000 * 117.50029 * 214.98167 * 24 22 20 41 41 H 1.08996 * 117.50105 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0018 11 6 2.6799 -4.1701 1.2663 12 6 3.9423 -3.4267 1.7074 13 6 3.8736 -2.6284 3.0108 14 6 4.6630 -3.9379 2.9566 15 6 2.6399 -4.1244 -1.1695 16 8 2.2448 -3.6633 -2.2194 17 6 3.6188 -5.2703 -1.1707 18 1 3.5029 -5.9884 -0.3590 19 6 5.0383 -4.9862 -1.6661 20 6 4.0764 -5.8070 -2.5284 21 1 3.6691 -5.3316 -3.4208 22 6 4.3372 -7.3103 -2.6424 23 6 3.6595 -8.0599 -3.7911 24 6 3.1679 -8.2540 -2.3546 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5572 0.8896 28 1 2.9080 -5.2279 1.1354 29 1 1.9070 -4.0565 2.0266 30 1 4.5560 -3.0234 0.9019 31 1 4.4421 -1.6998 3.0627 32 1 2.9287 -2.6323 3.5541 33 1 4.2375 -4.8035 3.4643 34 1 5.7509 -3.8708 2.9728 35 1 5.2642 -3.9706 -1.9907 36 1 5.8566 -5.5175 -1.1802 37 1 5.3335 -7.6383 -2.3457 38 1 3.0281 -7.4819 -4.4660 39 1 4.2097 -8.8813 -4.2500 40 1 3.3949 -9.2031 -1.8690 41 1 2.2129 -7.8040 -2.0836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175992686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:52 Heat of formation + Delta-G solvation = 18.587626 kcal Electronic energy + Delta-G solvation = -20193.466302 eV Core-core repulsion = 17268.024693 eV Total energy + Delta-G solvation = -2925.441608 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13040 -38.99233 -38.21599 -36.16280 -35.69246 -34.56733 -30.05096 -27.69266 -26.30529 -24.55005 -23.61554 -23.12995 -23.08453 -21.84019 -20.85553 -19.66247 -18.65958 -18.16717 -17.33545 -16.58985 -16.25655 -16.17162 -15.81257 -15.44020 -14.80059 -14.69104 -14.36548 -13.89048 -13.57279 -13.33835 -13.24816 -12.97072 -12.71289 -12.53814 -12.47271 -12.26521 -12.25474 -12.22684 -11.81520 -11.74040 -11.61638 -11.20540 -10.93447 -10.77507 -10.65798 -10.52264 -10.44517 -9.45488 -8.21671 -6.33584 1.32762 1.35158 1.46427 1.67120 2.21635 2.40072 2.78070 3.04826 3.08162 3.11307 3.57001 3.75403 3.84279 3.99719 4.04857 4.11518 4.20015 4.26493 4.27026 4.38899 4.52338 4.55924 4.66058 4.81181 4.84831 4.85600 4.90403 4.96220 5.07583 5.09546 5.14686 5.22381 5.26138 5.32985 5.37017 5.39803 5.40526 5.59996 5.86245 6.08131 6.71658 6.79763 7.29757 7.48723 8.86331 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.005849 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.721623 B = 4785.685191 C = 5569.633051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.261 3.739 10 N -0.595 5.595 11 C 0.144 3.856 12 C -0.170 4.170 13 C -0.189 4.189 14 C -0.142 4.142 15 C 0.523 3.477 16 O -0.604 6.604 17 C -0.179 4.179 18 H 0.150 0.850 19 C -0.126 4.126 20 C -0.097 4.097 21 H 0.082 0.918 22 C -0.120 4.120 23 C -0.179 4.179 24 C -0.175 4.175 25 H 0.265 0.735 26 H -0.007 1.007 27 H 0.021 0.979 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.300 -16.534 3.564 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.560 4.560 8 H 0.070 0.930 9 C 0.140 3.860 10 N -0.324 5.324 11 C 0.022 3.978 12 C -0.189 4.189 13 C -0.226 4.226 14 C -0.179 4.179 15 C 0.312 3.688 16 O -0.486 6.486 17 C -0.199 4.199 18 H 0.168 0.832 19 C -0.164 4.164 20 C -0.116 4.116 21 H 0.100 0.900 22 C -0.138 4.138 23 C -0.216 4.216 24 C -0.212 4.212 25 H 0.074 0.926 26 H 0.012 0.988 27 H 0.039 0.961 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.096 0.904 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.908 -16.170 3.060 20.314 hybrid contribution -0.456 1.751 -0.290 1.833 sum 11.452 -14.419 2.770 18.620 Atomic orbital electron populations 1.70058 1.07487 1.27836 1.51830 1.25799 0.95713 1.02801 0.94885 0.85451 0.78816 0.79177 0.77893 1.19259 1.20934 1.19441 1.21601 0.93007 0.91494 1.49850 0.93004 1.18751 0.87836 0.84127 0.95271 1.48113 1.44183 1.33829 1.06250 1.21303 0.94501 0.97536 0.84468 1.22533 0.99507 1.04796 0.92111 1.22936 1.02495 0.96180 1.00962 1.23048 0.99338 0.97079 0.98437 1.20470 0.81550 0.83821 0.82917 1.90618 1.60457 1.64211 1.33297 1.22297 0.96950 0.99020 1.01666 0.83233 1.23077 0.91139 1.00831 1.01307 1.21780 1.02484 0.94547 0.92786 0.89998 1.21769 0.98562 0.88690 1.04782 1.23063 1.03866 1.03155 0.91518 1.23022 0.97890 1.01238 0.99038 0.92589 0.98848 0.96109 0.87452 0.90857 0.90144 0.90151 0.89332 0.86624 0.87512 0.90658 0.84015 0.84822 0.90411 0.86571 0.86411 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.96 46.19 29.54 68.60 2.03 48.21 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.52 -30.56 9.39 25.60 0.24 -30.32 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.26 14.56 5.21 85.63 0.45 15.01 16 10 N -0.59 -26.17 2.46 -826.13 -2.03 -28.20 16 11 C 0.14 4.61 5.56 86.38 0.48 5.09 16 12 C -0.17 -5.16 6.01 -10.79 -0.06 -5.22 16 13 C -0.19 -5.52 10.18 30.59 0.31 -5.21 16 14 C -0.14 -2.99 10.25 30.60 0.31 -2.68 16 15 C 0.52 22.94 7.46 87.66 0.65 23.59 16 16 O -0.60 -33.18 15.84 -3.05 -0.05 -33.23 16 17 C -0.18 -5.32 4.93 -11.54 -0.06 -5.38 16 18 H 0.15 3.46 6.44 -2.39 -0.02 3.45 16 19 C -0.13 -3.19 9.96 30.61 0.30 -2.88 16 20 C -0.10 -2.65 5.38 -10.78 -0.06 -2.71 16 21 H 0.08 2.83 7.67 -2.38 -0.02 2.81 16 22 C -0.12 -2.31 5.87 -10.80 -0.06 -2.38 16 23 C -0.18 -3.35 10.25 30.62 0.31 -3.03 16 24 C -0.17 -3.22 10.18 30.61 0.31 -2.90 16 25 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 26 H -0.01 -0.43 7.42 -2.39 -0.02 -0.44 16 27 H 0.02 1.18 7.89 -2.39 -0.02 1.16 16 28 H 0.11 2.57 5.99 -2.39 -0.01 2.56 16 29 H 0.07 2.34 7.63 -2.38 -0.02 2.32 16 30 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 33 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -75.58 345.28 4.82 -70.76 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.99 Total: 18.03 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 3.59 Total: -18.20 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.74 Total: -85.56 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.05 Total: -33.23 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.58 4.82 -70.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.344 kcal (2) G-P(sol) polarization free energy of solvation -75.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds