Wall clock time and date at job start Sun Mar 29 2020 23:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99532 * 2 1 4 4 H 1.48502 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47597 * 300.00543 * 3 2 1 6 6 H 1.48506 * 109.47141 * 60.00525 * 3 2 1 7 7 C 1.37866 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00283 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47192 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00139 * 269.99818 * 10 9 7 12 12 C 1.52997 * 109.47146 * 270.00066 * 11 10 9 13 13 C 1.53005 * 117.49765 * 243.61691 * 12 11 10 14 14 C 1.52997 * 60.00177 * 252.51139 * 13 12 11 15 15 C 1.34776 * 120.00283 * 89.99680 * 10 9 7 16 16 O 1.21283 * 120.00016 * 0.02562 * 15 10 9 17 17 C 1.50696 * 120.00287 * 179.97438 * 15 10 9 18 18 H 1.09004 * 115.56587 * 325.70366 * 17 15 10 19 19 C 1.53006 * 117.49940 * 111.39553 * 17 15 10 20 20 C 1.52997 * 59.99924 * 107.49201 * 19 17 15 21 21 H 1.09002 * 117.49884 * 107.49654 * 20 19 17 22 22 C 1.53006 * 117.49537 * 252.50879 * 20 19 17 23 23 C 1.52998 * 117.49649 * 197.24305 * 22 20 19 24 24 C 1.52993 * 60.00359 * 252.51206 * 23 22 20 25 25 H 0.96999 * 120.00302 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47127 * 60.00351 * 9 7 2 27 27 H 1.09004 * 109.46790 * 299.99683 * 9 7 2 28 28 H 1.09000 * 109.46810 * 30.00294 * 11 10 9 29 29 H 1.08998 * 109.47266 * 149.99649 * 11 10 9 30 30 H 1.08997 * 115.55230 * 29.32716 * 12 11 10 31 31 H 1.08996 * 117.49884 * 0.02562 * 13 12 11 32 32 H 1.09001 * 117.49338 * 145.02138 * 13 12 11 33 33 H 1.08997 * 117.50245 * 252.51082 * 14 13 12 34 34 H 1.08999 * 117.52023 * 107.47923 * 14 13 12 35 35 H 1.08999 * 117.49661 * 214.98003 * 19 17 15 36 36 H 1.08999 * 117.49552 * 359.97438 * 19 17 15 37 37 H 1.08995 * 115.55107 * 342.95283 * 22 20 19 38 38 H 1.09000 * 117.50400 * 0.02562 * 23 22 20 39 39 H 1.09011 * 117.49561 * 145.02272 * 23 22 20 40 40 H 1.08996 * 117.50643 * 252.51317 * 24 23 22 41 41 H 1.09009 * 117.51476 * 107.47818 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2123 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6792 -4.1693 -1.2692 12 6 1.7486 -5.3006 -1.7109 13 6 2.3407 -6.7086 -1.7993 14 6 2.0090 -5.9366 -3.0779 15 6 2.6412 -4.1247 1.1666 16 8 2.2469 -3.6641 2.2170 17 6 3.6201 -5.2705 1.1666 18 1 3.5043 -5.9882 0.3544 19 6 5.0399 -4.9867 1.6614 20 6 4.0791 -5.8076 2.5237 21 1 4.2651 -6.8786 2.6044 22 6 3.5090 -5.1404 3.7771 23 6 2.8903 -6.0486 4.8416 24 6 1.9911 -5.1732 3.9666 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6249 -2.5571 0.8898 28 1 2.6870 -3.3877 -2.0289 29 1 3.6887 -4.5592 -1.1390 30 1 0.7117 -5.2097 -1.3874 31 1 3.3931 -6.8291 -1.5424 32 1 1.6933 -7.5444 -1.5337 33 1 1.1435 -6.2644 -3.6535 34 1 2.8431 -5.5488 -3.6627 35 1 5.8580 -5.5176 1.1746 36 1 5.2660 -3.9711 1.9865 37 1 4.0399 -4.2522 4.1196 38 1 2.8898 -7.1215 4.6493 39 1 3.0143 -5.7580 5.8849 40 1 1.5234 -4.3067 4.4339 41 1 1.3986 -5.6698 3.1980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:55 Heat of formation + Delta-G solvation = 44.694678 kcal Electronic energy + Delta-G solvation = -20524.013256 eV Core-core repulsion = 17599.703735 eV Total energy + Delta-G solvation = -2924.309521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.74901 -37.69311 -36.65194 -34.65706 -34.22052 -32.44595 -28.01025 -26.26569 -24.43144 -23.25532 -22.30766 -22.10755 -21.66236 -20.58718 -19.90736 -17.88309 -16.71965 -16.40326 -15.54459 -15.04639 -15.00238 -14.59034 -14.27878 -14.08594 -13.52613 -13.24339 -12.64135 -12.32508 -12.14752 -11.83763 -11.45115 -11.40096 -11.21287 -11.15654 -10.92418 -10.82884 -10.65388 -10.62623 -10.51514 -10.29369 -10.05608 -9.79744 -9.64206 -9.45997 -9.34621 -8.41306 -8.32879 -7.54786 -6.01819 -4.06074 3.28130 3.30510 3.38201 3.42213 3.82279 3.98798 4.12787 4.38374 4.46434 4.85584 4.94792 5.04938 5.08007 5.13969 5.25435 5.32162 5.37190 5.53633 5.54517 5.60100 5.66936 5.70624 5.81771 5.86746 5.90541 5.97623 6.01587 6.13848 6.17973 6.22631 6.36283 6.48873 6.50024 6.65025 6.75228 7.14306 7.49347 7.63528 7.95852 8.27605 8.53444 8.95204 9.24200 9.59439 11.06107 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.007452 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.315108 B = 3756.422653 C = 5089.381355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.248 3.752 10 N -0.594 5.594 11 C 0.144 3.856 12 C -0.163 4.163 13 C -0.186 4.186 14 C -0.177 4.177 15 C 0.533 3.467 16 O -0.522 6.522 17 C -0.185 4.185 18 H 0.118 0.882 19 C -0.152 4.152 20 C -0.093 4.093 21 H 0.105 0.895 22 C -0.106 4.106 23 C -0.208 4.208 24 C -0.111 4.111 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -14.000 -0.781 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.129 3.871 10 N -0.325 5.325 11 C 0.020 3.980 12 C -0.183 4.183 13 C -0.223 4.223 14 C -0.215 4.215 15 C 0.320 3.680 16 O -0.399 6.399 17 C -0.206 4.206 18 H 0.135 0.865 19 C -0.190 4.190 20 C -0.112 4.112 21 H 0.123 0.877 22 C -0.124 4.124 23 C -0.245 4.245 24 C -0.148 4.148 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.741 -13.590 -0.224 15.172 hybrid contribution 0.416 0.910 -0.324 1.052 sum 7.158 -12.680 -0.548 14.571 Atomic orbital electron populations 1.69946 1.05954 1.26783 1.50776 1.24925 0.94850 0.99135 0.95214 0.86479 0.80022 0.83578 0.77554 1.19851 1.21007 1.20937 1.21480 0.93341 0.90711 1.50562 0.92509 1.19237 0.87491 0.82164 0.98241 1.48122 1.45857 1.34616 1.03894 1.20965 0.95090 0.94437 0.87543 1.22965 1.01478 0.93902 0.99921 1.23029 1.01313 0.95402 1.02532 1.22896 1.03337 1.04465 0.90773 1.19364 0.81587 0.82964 0.84092 1.90693 1.58002 1.60970 1.30202 1.22485 0.97312 1.01295 0.99541 0.86451 1.22960 0.91173 1.01923 1.02936 1.21722 1.01741 0.97907 0.89789 0.87665 1.21398 0.97529 0.99245 0.94210 1.23252 1.07962 0.97107 0.96191 1.22490 0.92604 0.99849 0.99852 0.92856 0.95200 0.93938 0.89769 0.91425 0.87495 0.89005 0.89231 0.89043 0.88784 0.88456 0.88268 0.88255 0.89835 0.89722 0.89053 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -14.79 9.39 -34.44 -0.32 -15.12 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 10 N -0.59 -12.50 2.46 -175.06 -0.43 -12.93 16 11 C 0.14 2.39 5.34 -4.04 -0.02 2.37 16 12 C -0.16 -2.33 5.91 -90.62 -0.54 -2.86 16 13 C -0.19 -2.11 9.15 -26.73 -0.24 -2.35 16 14 C -0.18 -2.03 10.25 -26.73 -0.27 -2.30 16 15 C 0.53 10.93 7.29 -10.99 -0.08 10.85 16 16 O -0.52 -12.34 11.11 5.55 0.06 -12.28 16 17 C -0.19 -2.86 4.79 -91.77 -0.44 -3.30 16 18 H 0.12 1.58 5.21 -51.93 -0.27 1.31 16 19 C -0.15 -2.08 9.95 -26.73 -0.27 -2.35 16 20 C -0.09 -1.31 5.87 -90.62 -0.53 -1.84 16 21 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 22 C -0.11 -1.67 4.48 -90.62 -0.41 -2.08 16 23 C -0.21 -2.85 10.25 -26.74 -0.27 -3.12 16 24 C -0.11 -1.88 7.08 -26.73 -0.19 -2.07 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 28 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 29 H 0.07 0.98 6.38 -51.93 -0.33 0.65 16 30 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.09 0.95 7.25 -51.93 -0.38 0.57 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 40 H 0.09 1.69 8.06 -51.93 -0.42 1.27 16 41 H 0.08 1.47 7.96 -51.92 -0.41 1.06 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -30.98 334.02 -10.13 -41.12 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.81 Total: 4.18 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -3.71 Total: -16.13 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.31 Total: -38.89 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.06 Total: -12.28 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.98 -10.13 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.810 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds