Wall clock time and date at job start Sun Mar 29 2020 23:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00584 * 2 1 4 4 H 1.48494 * 109.47303 * 274.91898 * 3 2 1 5 5 H 1.48504 * 109.46803 * 34.92017 * 3 2 1 6 6 H 1.48499 * 109.47182 * 154.91575 * 3 2 1 7 7 C 1.38954 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00308 * 338.67340 * 7 2 1 9 9 N 1.37096 * 119.99945 * 158.39328 * 7 2 1 10 10 C 1.34777 * 120.00182 * 321.13372 * 9 7 2 11 11 O 1.21297 * 119.99747 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00322 * 180.02562 * 10 9 7 13 13 H 1.08998 * 115.54685 * 315.78144 * 12 10 9 14 14 C 1.52997 * 117.49935 * 170.07492 * 12 10 9 15 15 C 1.52991 * 117.49924 * 101.44992 * 12 10 9 16 16 H 1.09005 * 117.50056 * 214.99900 * 15 12 10 17 17 C 1.52999 * 117.50319 * 0.02562 * 15 12 10 18 18 C 1.52996 * 117.50085 * 243.04292 * 17 15 12 19 19 C 1.52995 * 117.50187 * 174.41737 * 17 15 12 20 20 C 1.46498 * 120.00127 * 141.12834 * 9 7 2 21 21 C 1.54261 * 110.03166 * 53.24740 * 20 9 7 22 22 C 1.54889 * 104.20141 * 217.10507 * 21 20 9 23 23 C 1.54893 * 102.74447 * 37.94298 * 22 21 20 24 24 C 1.53878 * 110.03263 * 296.08579 * 20 9 7 25 25 H 0.97005 * 119.99676 * 359.97438 * 1 2 3 26 26 H 1.09001 * 117.50113 * 0.02562 * 14 12 10 27 27 H 1.08997 * 117.49630 * 145.01661 * 14 12 10 28 28 H 1.09007 * 115.54648 * 28.75285 * 17 15 12 29 29 H 1.08995 * 117.49917 * 359.97438 * 18 17 15 30 30 H 1.08995 * 117.49801 * 145.02065 * 18 17 15 31 31 H 1.09005 * 117.50236 * 214.98737 * 19 17 15 32 32 H 1.09007 * 117.50189 * 0.02562 * 19 17 15 33 33 H 1.08994 * 110.01954 * 174.69496 * 20 9 7 34 34 H 1.08995 * 110.48982 * 335.79056 * 21 20 9 35 35 H 1.09003 * 110.48629 * 98.42778 * 21 20 9 36 36 H 1.08999 * 110.75596 * 279.63366 * 22 21 20 37 37 H 1.09000 * 110.76169 * 156.25340 * 22 21 20 38 38 H 1.08998 * 110.48997 * 203.38031 * 23 22 21 39 39 H 1.09002 * 110.48640 * 80.73867 * 23 22 21 40 40 H 1.09002 * 110.03000 * 238.56618 * 24 20 9 41 41 H 1.09000 * 110.03117 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.3919 2.1063 -1.3948 5 1 1.5016 2.6203 0.8015 6 1 3.5939 1.4121 0.5936 7 6 2.0088 -1.2034 0.0005 8 1 1.5242 -2.1066 0.3411 9 7 3.3075 -1.2455 -0.4366 10 6 3.6847 -0.5085 -1.5002 11 8 2.8751 0.1916 -2.0708 12 6 5.1122 -0.5551 -1.9811 13 1 5.8726 -0.5060 -1.2018 14 6 5.4285 0.1132 -3.3205 15 6 5.4156 -1.4128 -3.2111 16 1 6.3757 -1.9280 -3.2412 17 6 4.2465 -2.1571 -3.8593 18 6 4.2985 -3.6862 -3.8647 19 6 4.5230 -2.9084 -5.1630 20 6 4.2853 -2.0913 0.2522 21 6 3.7574 -3.5375 0.3495 22 6 4.2376 -4.0246 1.7392 23 6 4.0706 -2.7618 2.6204 24 6 4.4844 -1.5981 1.6962 25 1 -0.4850 0.8401 0.0004 26 1 4.6043 0.5870 -3.8537 27 1 6.3973 0.6023 -3.4225 28 1 3.2695 -1.6868 -3.7469 29 1 5.1657 -4.1619 -3.4070 30 1 3.3557 -4.2222 -3.7558 31 1 3.7279 -2.9328 -5.9083 32 1 5.5380 -2.8729 -5.5589 33 1 5.2351 -2.0749 -0.2822 34 1 2.6688 -3.5507 0.2958 35 1 4.1866 -4.1542 -0.4401 36 1 5.2822 -4.3333 1.7006 37 1 3.6071 -4.8358 2.1033 38 1 4.7284 -2.8123 3.4881 39 1 3.0326 -2.6497 2.9336 40 1 5.5310 -1.3432 1.8626 41 1 3.8538 -0.7291 1.8842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177420600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:49 Heat of formation + Delta-G solvation = 21.110890 kcal Electronic energy + Delta-G solvation = -21331.402614 eV Core-core repulsion = 18406.070423 eV Total energy + Delta-G solvation = -2925.332191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.67747 -37.85989 -36.71134 -34.65715 -33.40523 -31.74745 -28.14926 -27.12024 -25.68798 -23.58509 -22.48061 -21.97258 -20.30364 -20.24941 -19.61697 -18.69047 -16.85914 -16.07946 -15.67370 -15.27871 -14.86732 -14.31059 -13.99917 -13.68463 -13.26592 -13.20602 -12.82256 -12.54304 -12.07422 -11.65311 -11.43718 -11.38668 -11.17253 -10.94159 -10.88453 -10.77208 -10.60662 -10.54247 -10.44224 -10.09498 -9.96295 -9.93355 -9.74064 -9.62630 -9.13400 -8.42241 -8.36766 -7.50447 -6.11939 -3.82794 3.30542 3.53461 3.64777 3.76153 4.04810 4.34817 4.59271 4.68981 4.80347 5.10772 5.12791 5.15505 5.23687 5.25739 5.45693 5.48613 5.58526 5.61465 5.64239 5.78651 5.83116 5.87358 6.00463 6.07924 6.09505 6.11184 6.15251 6.19321 6.32725 6.35701 6.36921 6.41095 6.53417 6.54925 6.72900 6.77915 6.91678 6.98221 7.92672 8.06519 8.88995 9.02259 9.53411 9.94670 10.92765 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.010565 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.947895 B = 2649.597851 C = 3649.860453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.092 3.908 3 Si 0.913 3.087 4 H -0.253 1.253 5 H -0.315 1.315 6 H -0.284 1.284 7 C -0.342 4.342 8 H 0.096 0.904 9 N -0.448 5.448 10 C 0.474 3.526 11 O -0.546 6.546 12 C -0.173 4.173 13 H 0.110 0.890 14 C -0.151 4.151 15 C -0.099 4.099 16 H 0.102 0.898 17 C -0.117 4.117 18 C -0.174 4.174 19 C -0.182 4.182 20 C 0.132 3.868 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.270 0.730 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 -6.374 -1.855 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.117 4.117 3 Si 0.745 3.255 4 H -0.179 1.179 5 H -0.245 1.245 6 H -0.210 1.210 7 C -0.468 4.468 8 H 0.113 0.887 9 N -0.168 5.168 10 C 0.264 3.736 11 O -0.430 6.430 12 C -0.194 4.194 13 H 0.128 0.872 14 C -0.188 4.188 15 C -0.118 4.118 16 H 0.120 0.880 17 C -0.135 4.135 18 C -0.211 4.211 19 C -0.219 4.219 20 C 0.027 3.973 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.172 4.172 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.111 0.889 28 H 0.134 0.866 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.890 -5.958 -2.127 13.469 hybrid contribution 0.496 0.806 0.239 0.976 sum 12.386 -5.153 -1.888 13.547 Atomic orbital electron populations 1.69777 1.06896 1.27999 1.45551 1.25256 0.94821 0.99326 0.92272 0.86375 0.78771 0.82339 0.77977 1.17932 1.24543 1.20965 1.18676 0.85217 0.96057 1.46837 0.88690 1.43651 1.09040 1.39794 1.24323 1.19264 0.87911 0.84860 0.81527 1.90506 1.52879 1.42027 1.57577 1.22333 0.97917 1.06902 0.92281 0.87234 1.22931 1.02761 0.94247 0.98863 1.21674 0.97779 0.92799 0.99543 0.87976 1.21789 0.99345 0.93203 0.99158 1.22857 1.02890 0.94433 1.00930 1.22889 1.02148 1.05568 0.91257 1.21754 0.92000 0.91000 0.92576 1.22659 1.03054 0.95114 0.95828 1.22435 1.00041 0.97399 0.96067 1.22260 1.01514 0.94594 0.97102 1.22488 1.00066 0.99602 0.95022 0.92028 0.87608 0.88869 0.86587 0.89180 0.88904 0.89127 0.89228 0.90836 0.89571 0.92488 0.92335 0.92131 0.92762 0.91221 0.92947 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.62 13.96 55.50 0.77 -25.85 16 2 C 0.09 2.71 4.80 -17.47 -0.08 2.62 16 3 Si 0.91 24.88 24.73 -169.99 -4.20 20.67 16 4 H -0.25 -7.26 6.17 56.52 0.35 -6.91 16 5 H -0.32 -8.49 7.11 56.52 0.40 -8.09 16 6 H -0.28 -7.44 7.11 56.52 0.40 -7.03 16 7 C -0.34 -9.42 8.49 -14.93 -0.13 -9.54 16 8 H 0.10 2.73 6.54 -52.49 -0.34 2.39 16 9 N -0.45 -10.55 2.14 -106.54 -0.23 -10.77 16 10 C 0.47 11.26 4.39 -10.98 -0.05 11.21 16 11 O -0.55 -15.17 10.95 5.54 0.06 -15.11 16 12 C -0.17 -3.18 4.62 -91.78 -0.42 -3.61 16 13 H 0.11 1.80 7.28 -51.93 -0.38 1.42 16 14 C -0.15 -2.47 9.76 -26.73 -0.26 -2.73 16 15 C -0.10 -1.54 5.85 -90.62 -0.53 -2.07 16 16 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.12 -1.94 5.27 -90.62 -0.48 -2.41 16 18 C -0.17 -2.47 10.25 -26.73 -0.27 -2.74 16 19 C -0.18 -2.42 10.25 -26.73 -0.27 -2.70 16 20 C 0.13 2.46 3.17 -66.81 -0.21 2.25 16 21 C -0.13 -2.18 6.40 -25.08 -0.16 -2.34 16 22 C -0.12 -1.72 6.91 -24.74 -0.17 -1.89 16 23 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 24 C -0.13 -2.36 6.31 -25.61 -0.16 -2.52 16 25 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 26 H 0.11 1.96 7.70 -51.93 -0.40 1.56 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.12 2.41 7.04 -51.92 -0.37 2.04 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.24 5.81 -51.93 -0.30 0.93 16 34 H 0.09 1.72 6.05 -51.93 -0.31 1.40 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.67 7.51 -51.93 -0.39 1.28 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -31.99 319.40 -8.91 -40.90 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.75 Total: 3.79 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -3.38 Total: -18.45 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.55 Total: -36.62 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.06 Total: -15.11 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.20 Total: 20.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.99 -8.91 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177420600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.010 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds