Wall clock time and date at job start Sun Mar 29 2020 23:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00584 * 2 1 4 4 H 1.48494 * 109.47303 * 274.91898 * 3 2 1 5 5 H 1.48504 * 109.46803 * 34.92017 * 3 2 1 6 6 H 1.48499 * 109.47182 * 154.91575 * 3 2 1 7 7 C 1.38954 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00308 * 338.67340 * 7 2 1 9 9 N 1.37096 * 119.99945 * 158.39328 * 7 2 1 10 10 C 1.34777 * 120.00182 * 321.13372 * 9 7 2 11 11 O 1.21297 * 119.99747 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00322 * 180.02562 * 10 9 7 13 13 H 1.08998 * 115.54685 * 315.78144 * 12 10 9 14 14 C 1.52997 * 117.49935 * 170.07492 * 12 10 9 15 15 C 1.52991 * 117.49924 * 101.44992 * 12 10 9 16 16 H 1.09005 * 117.50056 * 214.99900 * 15 12 10 17 17 C 1.52999 * 117.50319 * 0.02562 * 15 12 10 18 18 C 1.52996 * 117.50085 * 243.04292 * 17 15 12 19 19 C 1.52995 * 117.50187 * 174.41737 * 17 15 12 20 20 C 1.46498 * 120.00127 * 141.12834 * 9 7 2 21 21 C 1.54261 * 110.03166 * 53.24740 * 20 9 7 22 22 C 1.54889 * 104.20141 * 217.10507 * 21 20 9 23 23 C 1.54893 * 102.74447 * 37.94298 * 22 21 20 24 24 C 1.53878 * 110.03263 * 296.08579 * 20 9 7 25 25 H 0.97005 * 119.99676 * 359.97438 * 1 2 3 26 26 H 1.09001 * 117.50113 * 0.02562 * 14 12 10 27 27 H 1.08997 * 117.49630 * 145.01661 * 14 12 10 28 28 H 1.09007 * 115.54648 * 28.75285 * 17 15 12 29 29 H 1.08995 * 117.49917 * 359.97438 * 18 17 15 30 30 H 1.08995 * 117.49801 * 145.02065 * 18 17 15 31 31 H 1.09005 * 117.50236 * 214.98737 * 19 17 15 32 32 H 1.09007 * 117.50189 * 0.02562 * 19 17 15 33 33 H 1.08994 * 110.01954 * 174.69496 * 20 9 7 34 34 H 1.08995 * 110.48982 * 335.79056 * 21 20 9 35 35 H 1.09003 * 110.48629 * 98.42778 * 21 20 9 36 36 H 1.08999 * 110.75596 * 279.63366 * 22 21 20 37 37 H 1.09000 * 110.76169 * 156.25340 * 22 21 20 38 38 H 1.08998 * 110.48997 * 203.38031 * 23 22 21 39 39 H 1.09002 * 110.48640 * 80.73867 * 23 22 21 40 40 H 1.09002 * 110.03000 * 238.56618 * 24 20 9 41 41 H 1.09000 * 110.03117 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.3919 2.1063 -1.3948 5 1 1.5016 2.6203 0.8015 6 1 3.5939 1.4121 0.5936 7 6 2.0088 -1.2034 0.0005 8 1 1.5242 -2.1066 0.3411 9 7 3.3075 -1.2455 -0.4366 10 6 3.6847 -0.5085 -1.5002 11 8 2.8751 0.1916 -2.0708 12 6 5.1122 -0.5551 -1.9811 13 1 5.8726 -0.5060 -1.2018 14 6 5.4285 0.1132 -3.3205 15 6 5.4156 -1.4128 -3.2111 16 1 6.3757 -1.9280 -3.2412 17 6 4.2465 -2.1571 -3.8593 18 6 4.2985 -3.6862 -3.8647 19 6 4.5230 -2.9084 -5.1630 20 6 4.2853 -2.0913 0.2522 21 6 3.7574 -3.5375 0.3495 22 6 4.2376 -4.0246 1.7392 23 6 4.0706 -2.7618 2.6204 24 6 4.4844 -1.5981 1.6962 25 1 -0.4850 0.8401 0.0004 26 1 4.6043 0.5870 -3.8537 27 1 6.3973 0.6023 -3.4225 28 1 3.2695 -1.6868 -3.7469 29 1 5.1657 -4.1619 -3.4070 30 1 3.3557 -4.2222 -3.7558 31 1 3.7279 -2.9328 -5.9083 32 1 5.5380 -2.8729 -5.5589 33 1 5.2351 -2.0749 -0.2822 34 1 2.6688 -3.5507 0.2958 35 1 4.1866 -4.1542 -0.4401 36 1 5.2822 -4.3333 1.7006 37 1 3.6071 -4.8358 2.1033 38 1 4.7284 -2.8123 3.4881 39 1 3.0326 -2.6497 2.9336 40 1 5.5310 -1.3432 1.8626 41 1 3.8538 -0.7291 1.8842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177420600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:49 Heat of formation + Delta-G solvation = 2.155287 kcal Electronic energy + Delta-G solvation = -21332.224591 eV Core-core repulsion = 18406.070423 eV Total energy + Delta-G solvation = -2926.154168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34768 -39.20860 -38.24597 -36.00756 -35.25929 -33.83754 -29.47661 -28.71415 -27.48603 -24.89885 -24.09697 -23.12246 -21.74296 -21.55489 -21.02640 -20.48840 -18.57073 -17.72207 -17.16776 -16.98677 -16.32964 -15.79200 -15.65383 -15.20231 -15.09488 -14.69175 -14.49439 -14.10200 -13.86872 -13.34654 -13.01610 -12.74231 -12.51743 -12.42578 -12.27540 -12.19105 -12.10062 -11.87179 -11.83112 -11.78843 -11.63727 -11.34491 -11.28377 -10.92289 -10.68943 -10.41566 -10.22522 -9.49268 -8.39253 -6.05966 1.18784 1.31480 1.49498 1.90784 2.43833 2.65857 2.71259 3.10098 3.33839 3.54269 3.79822 3.86371 3.94711 3.95902 4.06606 4.26137 4.32091 4.36162 4.39419 4.44445 4.60527 4.67778 4.77061 4.77852 4.79864 4.89409 4.93879 5.01063 5.08182 5.11232 5.17345 5.25636 5.29254 5.29861 5.43118 5.44425 5.53786 5.61472 5.75429 5.93601 6.84397 6.98708 7.44866 7.99094 8.69367 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.010565 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.947895 B = 2649.597851 C = 3649.860453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.041 3.959 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.315 1.315 6 H -0.266 1.266 7 C -0.323 4.323 8 H 0.070 0.930 9 N -0.461 5.461 10 C 0.470 3.530 11 O -0.597 6.597 12 C -0.196 4.196 13 H 0.142 0.858 14 C -0.149 4.149 15 C -0.067 4.067 16 H 0.151 0.849 17 C -0.154 4.154 18 C -0.166 4.166 19 C -0.157 4.157 20 C 0.124 3.876 21 C -0.128 4.128 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.135 4.135 25 H 0.268 0.732 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.569 -8.234 -2.020 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.162 4.162 3 Si 0.795 3.205 4 H -0.208 1.208 5 H -0.246 1.246 6 H -0.191 1.191 7 C -0.450 4.450 8 H 0.088 0.912 9 N -0.181 5.181 10 C 0.262 3.738 11 O -0.484 6.484 12 C -0.217 4.217 13 H 0.160 0.840 14 C -0.187 4.187 15 C -0.085 4.085 16 H 0.169 0.831 17 C -0.173 4.173 18 C -0.203 4.203 19 C -0.193 4.193 20 C 0.020 3.980 21 C -0.166 4.166 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.174 4.174 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.002 -7.847 -2.262 18.862 hybrid contribution -1.098 1.279 0.185 1.696 sum 15.904 -6.567 -2.077 17.331 Atomic orbital electron populations 1.69865 1.08039 1.28197 1.49227 1.25861 0.95289 1.01829 0.93208 0.85549 0.78738 0.80006 0.76208 1.20805 1.24568 1.19101 1.18547 0.87361 0.94521 1.44602 0.91239 1.43853 1.08517 1.40636 1.25073 1.20303 0.90126 0.82857 0.80490 1.90467 1.55159 1.43982 1.58805 1.22318 0.94373 1.10737 0.94237 0.84046 1.23031 1.03422 0.95582 0.96622 1.21851 0.98738 0.92213 0.95714 0.83100 1.21646 0.97557 0.94896 1.03187 1.22949 1.03455 0.92339 1.01517 1.22992 1.03798 1.02403 0.90137 1.22138 0.91957 0.90721 0.93139 1.22622 1.00432 0.94781 0.98789 1.22413 1.02185 0.96746 0.93227 1.22258 1.00512 0.94475 0.98144 1.22517 1.01305 0.98752 0.94794 0.92297 0.91123 0.84724 0.92491 0.86282 0.90327 0.89367 0.86054 0.87574 0.93911 0.90410 0.88756 0.91285 0.89551 0.94149 0.89445 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.84 13.96 21.66 0.30 -59.54 16 2 C 0.04 2.56 4.80 84.93 0.41 2.96 16 3 Si 0.96 53.95 24.73 68.60 1.70 55.64 16 4 H -0.28 -16.80 6.17 99.48 0.61 -16.19 16 5 H -0.32 -17.30 7.11 99.48 0.71 -16.60 16 6 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.32 -18.71 8.49 84.04 0.71 -17.99 16 8 H 0.07 4.30 6.54 -2.91 -0.02 4.28 16 9 N -0.46 -21.95 2.14 -609.38 -1.30 -23.25 16 10 C 0.47 22.49 4.39 87.66 0.38 22.88 16 11 O -0.60 -34.73 10.95 -3.08 -0.03 -34.77 16 12 C -0.20 -6.65 4.62 -11.54 -0.05 -6.70 16 13 H 0.14 3.91 7.28 -2.39 -0.02 3.89 16 14 C -0.15 -4.48 9.76 30.59 0.30 -4.18 16 15 C -0.07 -1.80 5.85 -10.80 -0.06 -1.87 16 16 H 0.15 2.73 8.14 -2.38 -0.02 2.71 16 17 C -0.15 -4.89 5.27 -10.80 -0.06 -4.95 16 18 C -0.17 -4.22 10.25 30.59 0.31 -3.90 16 19 C -0.16 -3.69 10.25 30.59 0.31 -3.37 16 20 C 0.12 4.37 3.17 45.72 0.15 4.51 16 21 C -0.13 -4.13 6.40 31.67 0.20 -3.92 16 22 C -0.11 -2.67 6.91 31.89 0.22 -2.45 16 23 C -0.12 -3.31 6.83 31.67 0.22 -3.09 16 24 C -0.14 -4.49 6.31 31.32 0.20 -4.29 16 25 H 0.27 16.73 8.31 -92.70 -0.77 15.96 16 26 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 27 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.06 2.50 7.04 -2.38 -0.02 2.48 16 29 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.11 3.06 5.81 -2.39 -0.01 3.05 16 34 H 0.04 1.75 6.05 -2.39 -0.01 1.73 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.04 1.55 7.51 -2.39 -0.02 1.53 16 Total: -1.00 -78.18 319.40 4.81 -73.38 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.91 Total: 14.91 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 3.24 Total: -26.38 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.00 Total: -82.79 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.03 Total: -34.77 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 1.70 Total: 55.64 kcal Total: -78.18 4.81 -73.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177420600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.532 kcal (2) G-P(sol) polarization free energy of solvation -78.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds