Wall clock time and date at job start Sun Mar 29 2020 23:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47065 * 90.00346 * 3 2 1 5 5 H 1.48501 * 109.47238 * 329.99738 * 3 2 1 6 6 H 1.48502 * 109.46965 * 210.00112 * 3 2 1 7 7 C 1.38953 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99741 * 200.84712 * 7 2 1 9 9 N 1.37096 * 119.99897 * 20.84434 * 7 2 1 10 10 C 1.34777 * 119.99826 * 50.88623 * 9 7 2 11 11 O 1.21292 * 119.99882 * 176.00545 * 10 9 7 12 12 C 1.50696 * 120.00289 * 356.00626 * 10 9 7 13 13 H 1.09007 * 115.55043 * 25.08706 * 12 10 9 14 14 C 1.53005 * 117.49701 * 239.38549 * 12 10 9 15 15 C 1.53002 * 117.50078 * 170.76204 * 12 10 9 16 16 H 1.08998 * 117.49863 * 359.97308 * 15 12 10 17 17 C 1.53004 * 117.49519 * 214.97813 * 15 12 10 18 18 C 1.52997 * 117.49574 * 128.74628 * 17 15 12 19 19 C 1.52999 * 117.49906 * 60.08693 * 17 15 12 20 20 C 1.46498 * 119.99931 * 230.88237 * 9 7 2 21 21 C 1.54268 * 110.03563 * 57.17138 * 20 9 7 22 22 C 1.54889 * 104.19556 * 217.10517 * 21 20 9 23 23 C 1.54892 * 102.74892 * 37.93876 * 22 21 20 24 24 C 1.53878 * 110.03315 * 299.99864 * 20 9 7 25 25 H 0.96999 * 119.99696 * 185.40996 * 1 2 3 26 26 H 1.08993 * 117.50195 * 359.97438 * 14 12 10 27 27 H 1.09004 * 117.49461 * 145.02200 * 14 12 10 28 28 H 1.08991 * 115.54965 * 274.41324 * 17 15 12 29 29 H 1.09005 * 117.50239 * 359.97438 * 18 17 15 30 30 H 1.08997 * 117.50019 * 145.01752 * 18 17 15 31 31 H 1.08996 * 117.50153 * 214.97546 * 19 17 15 32 32 H 1.09001 * 117.50155 * 359.97438 * 19 17 15 33 33 H 1.08999 * 110.01518 * 178.61116 * 20 9 7 34 34 H 1.09001 * 110.48170 * 335.78346 * 21 20 9 35 35 H 1.09000 * 110.48679 * 98.42578 * 21 20 9 36 36 H 1.08997 * 110.75396 * 279.62481 * 22 21 20 37 37 H 1.08999 * 110.75648 * 156.25257 * 22 21 20 38 38 H 1.09003 * 110.48343 * 203.37506 * 23 22 21 39 39 H 1.08995 * 110.48549 * 80.73752 * 23 22 21 40 40 H 1.08994 * 110.03490 * 238.56671 * 24 20 9 41 41 H 1.08996 * 110.02776 * 359.95628 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7001 6 1 3.5457 1.4402 -0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0359 -1.2338 0.3334 9 7 1.3907 -2.3520 -0.4214 10 6 0.7491 -2.3756 -1.6064 11 8 0.2646 -3.4105 -2.0132 12 6 0.6337 -1.1163 -2.4261 13 1 1.4063 -0.3679 -2.2494 14 6 -0.7736 -0.6151 -2.7567 15 6 0.0897 -1.2476 -3.8501 16 1 -0.1843 -2.2449 -4.1942 17 6 0.6715 -0.3180 -4.9170 18 6 1.1777 -0.9577 -6.2114 19 6 2.1746 -0.4074 -5.1884 20 6 1.4276 -3.5536 0.4157 21 6 0.8332 -3.2477 1.8060 22 6 1.7093 -4.0704 2.7831 23 6 3.1251 -3.9345 2.1699 24 6 2.8848 -3.9904 0.6470 25 1 -0.4849 -0.8363 0.0792 26 1 -1.6159 -1.1963 -2.3817 27 1 -0.9270 0.4633 -2.7975 28 1 0.2044 0.6640 -4.9902 29 1 1.0967 -2.0409 -6.3027 30 1 1.0440 -0.3964 -7.1360 31 1 2.6963 0.5158 -5.4405 32 1 2.7491 -1.1282 -4.6065 33 1 0.8680 -4.3581 -0.0616 34 1 0.9105 -2.1833 2.0280 35 1 -0.2054 -3.5746 1.8572 36 1 1.3940 -5.1136 2.7997 37 1 1.6791 -3.6406 3.7843 38 1 3.7591 -4.7626 2.4868 39 1 3.5726 -2.9811 2.4507 40 1 3.0322 -5.0071 0.2830 41 1 3.5645 -3.3087 0.1358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177420629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:54 Heat of formation + Delta-G solvation = 2.171815 kcal Electronic energy + Delta-G solvation = -21018.471768 eV Core-core repulsion = 18092.318317 eV Total energy + Delta-G solvation = -2926.153451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.38710 -37.81405 -36.50365 -34.33256 -33.98385 -31.10652 -28.05728 -27.21090 -24.66296 -23.64495 -22.47738 -22.02262 -20.12049 -19.78477 -19.46697 -18.71508 -16.93144 -16.04462 -15.21495 -15.17957 -14.75204 -14.11006 -13.99660 -13.83412 -13.63991 -12.79319 -12.73477 -12.31863 -11.80754 -11.42152 -11.27333 -11.12522 -11.01121 -10.87252 -10.72582 -10.58070 -10.47237 -10.30287 -10.25748 -10.20944 -10.16624 -10.07386 -9.57463 -9.29929 -9.10720 -8.57583 -8.31695 -7.53431 -6.56909 -4.11248 3.27073 3.31831 3.47388 3.73926 4.09782 4.23786 4.64411 4.73414 5.03423 5.18931 5.26800 5.27901 5.31640 5.46259 5.49426 5.82522 5.86855 5.92183 6.00424 6.04593 6.08964 6.15645 6.19961 6.23378 6.24558 6.31765 6.42035 6.44901 6.46717 6.52442 6.61415 6.62399 6.66515 6.83629 6.96615 6.99587 7.12474 7.17092 7.80227 8.24347 8.37118 9.16844 9.49019 9.92741 10.68155 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.007926 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.532737 B = 3531.995871 C = 4268.560212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.022 3.978 3 Si 1.064 2.936 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.425 4.425 8 H 0.072 0.928 9 N -0.449 5.449 10 C 0.518 3.482 11 O -0.611 6.611 12 C -0.125 4.125 13 H 0.123 0.877 14 C -0.118 4.118 15 C -0.128 4.128 16 H 0.105 0.895 17 C -0.114 4.114 18 C -0.182 4.182 19 C -0.177 4.177 20 C 0.130 3.870 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.125 4.125 25 H 0.276 0.724 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 -0.432 -2.152 4.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.189 4.189 3 Si 0.890 3.110 4 H -0.212 1.212 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.090 0.910 9 N -0.168 5.168 10 C 0.308 3.692 11 O -0.498 6.498 12 C -0.145 4.145 13 H 0.141 0.859 14 C -0.156 4.156 15 C -0.147 4.147 16 H 0.123 0.877 17 C -0.132 4.132 18 C -0.218 4.218 19 C -0.214 4.214 20 C 0.026 3.974 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.934 0.687 -2.385 3.842 hybrid contribution 0.233 -1.556 0.348 1.612 sum 3.167 -0.869 -2.037 3.864 Atomic orbital electron populations 1.70655 1.06812 1.31433 1.40188 1.26345 0.96358 1.02224 0.93934 0.83584 0.75231 0.74910 0.77241 1.21236 1.20369 1.20806 1.19929 0.97486 0.85982 1.51899 0.90984 1.43492 1.49036 1.10253 1.14047 1.19747 0.79899 0.88217 0.81301 1.90487 1.53563 1.33635 1.72086 1.22005 0.99506 0.98830 0.94208 0.85901 1.22615 0.93164 0.99994 0.99811 1.21906 1.04691 0.99304 0.88822 0.87700 1.21721 0.96124 0.99352 0.95962 1.22950 1.05149 1.00607 0.93143 1.22946 0.92619 1.02850 1.03033 1.21616 0.94828 0.89755 0.91197 1.22613 0.97424 1.01907 0.94335 1.22413 0.95810 0.99318 0.98316 1.22256 0.96584 1.00859 0.95657 1.22376 0.98027 1.00109 0.95855 0.91257 0.89776 0.88841 0.88009 0.89035 0.89356 0.89225 0.88587 0.90558 0.89467 0.93155 0.92434 0.92271 0.92862 0.91617 0.93001 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.29 11.33 55.50 0.63 -21.66 16 2 C 0.02 0.55 3.21 -17.46 -0.06 0.49 16 3 Si 1.06 22.15 29.66 -169.99 -5.04 17.11 16 4 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.43 -10.50 6.82 -14.93 -0.10 -10.60 16 8 H 0.07 1.79 7.26 -52.49 -0.38 1.41 16 9 N -0.45 -11.05 2.06 -106.54 -0.22 -11.27 16 10 C 0.52 13.26 6.49 -10.99 -0.07 13.19 16 11 O -0.61 -16.82 15.66 5.55 0.09 -16.73 16 12 C -0.12 -2.86 3.48 -91.77 -0.32 -3.18 16 13 H 0.12 2.94 5.92 -51.93 -0.31 2.63 16 14 C -0.12 -2.50 8.89 -26.73 -0.24 -2.73 16 15 C -0.13 -2.56 5.38 -90.61 -0.49 -3.04 16 16 H 0.10 2.22 7.70 -51.93 -0.40 1.82 16 17 C -0.11 -1.88 5.87 -90.62 -0.53 -2.41 16 18 C -0.18 -2.58 10.25 -26.70 -0.27 -2.86 16 19 C -0.18 -2.74 10.18 -26.69 -0.27 -3.01 16 20 C 0.13 2.87 3.29 -66.81 -0.22 2.65 16 21 C -0.12 -2.52 6.41 -25.07 -0.16 -2.68 16 22 C -0.12 -1.98 6.91 -24.74 -0.17 -2.15 16 23 C -0.12 -1.90 6.83 -25.07 -0.17 -2.08 16 24 C -0.13 -2.40 6.25 -25.61 -0.16 -2.56 16 25 H 0.28 7.56 7.48 -40.82 -0.31 7.26 16 26 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 27 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 28 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 34 H 0.09 1.99 7.01 -51.93 -0.36 1.63 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.47 6.98 -51.93 -0.36 1.11 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -27.22 325.44 -9.65 -36.87 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.77 Total: 11.73 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -3.23 Total: -20.95 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.41 Total: -32.93 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.09 Total: -16.73 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.04 Total: 17.11 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.22 -9.65 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177420629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.045 kcal (2) G-P(sol) polarization free energy of solvation -27.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds