Wall clock time and date at job start Sun Mar 29 2020 23:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48497 * 109.47376 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47061 * 119.99932 * 3 2 1 6 6 H 1.48507 * 109.46652 * 239.99551 * 3 2 1 7 7 C 1.38951 * 119.99372 * 179.71973 * 2 1 3 8 8 H 1.07998 * 119.99424 * 204.03892 * 7 2 1 9 9 N 1.37103 * 120.00276 * 24.04256 * 7 2 1 10 10 C 1.34775 * 120.00029 * 43.85228 * 9 7 2 11 11 O 1.21301 * 119.99717 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00013 * 179.97438 * 10 9 7 13 13 H 1.09002 * 115.55407 * 325.72392 * 12 10 9 14 14 C 1.53001 * 117.49799 * 111.39124 * 12 10 9 15 15 C 1.53000 * 60.00057 * 107.49130 * 14 12 10 16 16 H 1.09002 * 117.49955 * 107.48889 * 15 14 12 17 17 C 1.53004 * 117.49784 * 252.51031 * 15 14 12 18 18 C 1.52996 * 117.49814 * 197.24438 * 17 15 14 19 19 C 1.53004 * 117.49701 * 128.62085 * 17 15 14 20 20 C 1.46500 * 119.99911 * 223.84998 * 9 7 2 21 21 C 1.54269 * 110.03131 * 57.10480 * 20 9 7 22 22 C 1.54892 * 104.19498 * 217.10695 * 21 20 9 23 23 C 1.54887 * 102.74970 * 37.93875 * 22 21 20 24 24 C 1.53877 * 110.03151 * 299.93809 * 20 9 7 25 25 H 0.96997 * 120.00354 * 185.12885 * 1 2 3 26 26 H 1.09003 * 117.49930 * 214.98064 * 14 12 10 27 27 H 1.08994 * 117.49809 * 359.97438 * 14 12 10 28 28 H 1.08999 * 115.54872 * 342.95257 * 17 15 14 29 29 H 1.09000 * 117.49925 * 359.97438 * 18 17 15 30 30 H 1.09000 * 117.50349 * 145.02209 * 18 17 15 31 31 H 1.08991 * 117.49707 * 214.98084 * 19 17 15 32 32 H 1.08996 * 117.49793 * 359.97438 * 19 17 15 33 33 H 1.08995 * 110.01525 * 178.54672 * 20 9 7 34 34 H 1.08999 * 110.48599 * 335.77973 * 21 20 9 35 35 H 1.08988 * 110.48618 * 98.42502 * 21 20 9 36 36 H 1.09000 * 110.75344 * 279.63127 * 22 21 20 37 37 H 1.08996 * 110.75656 * 156.25946 * 22 21 20 38 38 H 1.09001 * 110.49131 * 203.37978 * 23 22 21 39 39 H 1.08997 * 110.48601 * 80.73999 * 23 22 21 40 40 H 1.09001 * 110.03013 * 238.56919 * 24 20 9 41 41 H 1.08996 * 110.03395 * 359.94905 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2832 2.7464 -0.0006 5 1 3.1019 1.6963 1.2125 6 1 3.1020 1.6962 -1.2125 7 6 2.0088 -1.2034 0.0059 8 1 3.0185 -1.2421 0.3871 9 7 1.4124 -2.3416 -0.4723 10 6 0.7073 -2.3016 -1.6202 11 8 0.6008 -1.2588 -2.2305 12 6 0.0523 -3.5527 -2.1461 13 1 0.5938 -4.4804 -1.9607 14 6 -1.4764 -3.6112 -2.1271 15 6 -0.7337 -3.4423 -3.4541 16 1 -0.7094 -4.2975 -4.1296 17 6 -0.7946 -2.0701 -4.1281 18 6 -0.4173 -1.9930 -5.6088 19 6 0.5302 -1.4297 -4.5476 20 6 1.5416 -3.6012 0.2645 21 6 1.0156 -3.4275 1.7043 22 6 1.9757 -4.2851 2.5656 23 6 3.3486 -4.0437 1.8903 24 6 3.0250 -3.9929 0.3828 25 1 -0.4850 -0.8366 0.0751 26 1 -1.9407 -4.5774 -1.9296 27 1 -2.0083 -2.7449 -1.7339 28 1 -1.5843 -1.4073 -3.7744 29 1 -0.1253 -2.9198 -6.1027 30 1 -0.9589 -1.2794 -6.2297 31 1 0.6118 -0.3456 -4.4703 32 1 1.4450 -1.9858 -4.3430 33 1 0.9867 -4.3895 -0.2440 34 1 1.0653 -2.3810 2.0050 35 1 -0.0053 -3.8005 1.7850 36 1 1.7014 -5.3389 2.5168 37 1 1.9860 -3.9349 3.5977 38 1 4.0302 -4.8663 2.1066 39 1 3.7751 -3.0967 2.2210 40 1 3.1897 -4.9717 -0.0676 41 1 3.6487 -3.2463 -0.1088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177420644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:57 Heat of formation + Delta-G solvation = 21.673107 kcal Electronic energy + Delta-G solvation = -21326.833552 eV Core-core repulsion = 18401.525740 eV Total energy + Delta-G solvation = -2925.307812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.44165 -37.80911 -36.12515 -34.37799 -33.26068 -31.28624 -28.10421 -26.76294 -25.39620 -23.25217 -22.46490 -21.62130 -20.14420 -20.09528 -19.64857 -18.45148 -16.58970 -16.27784 -15.19806 -14.97989 -14.60479 -13.99391 -13.87374 -13.66250 -13.50193 -12.97221 -12.64393 -12.31183 -11.65907 -11.57754 -11.05511 -10.96423 -10.85935 -10.67157 -10.62472 -10.61635 -10.51868 -10.37219 -10.22867 -10.12840 -10.07633 -9.99562 -9.54339 -9.24452 -9.00333 -8.46210 -7.73980 -7.20529 -6.28508 -3.76361 3.44932 3.55634 3.69520 3.80957 4.33678 4.47346 4.66543 4.85816 5.15216 5.19333 5.24625 5.34931 5.43138 5.54058 5.56414 5.63850 5.79894 5.86409 5.92148 5.96340 6.06933 6.08574 6.11361 6.13424 6.17954 6.20790 6.28481 6.39616 6.40919 6.54262 6.57188 6.64461 6.73443 6.78076 6.90934 6.93298 7.01971 7.12605 8.04014 8.50589 8.98123 9.34272 9.69112 10.28291 11.00108 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.009627 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.900210 B = 2907.914005 C = 4130.752815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.043 3.957 3 Si 1.070 2.930 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.421 4.421 8 H 0.066 0.934 9 N -0.451 5.451 10 C 0.483 3.517 11 O -0.520 6.520 12 C -0.174 4.174 13 H 0.103 0.897 14 C -0.157 4.157 15 C -0.096 4.096 16 H 0.099 0.901 17 C -0.097 4.097 18 C -0.215 4.215 19 C -0.101 4.101 20 C 0.128 3.872 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.130 4.130 25 H 0.270 0.730 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -9.039 -1.204 9.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.170 4.170 3 Si 0.898 3.102 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.547 4.547 8 H 0.084 0.916 9 N -0.173 5.173 10 C 0.270 3.730 11 O -0.398 6.398 12 C -0.196 4.196 13 H 0.121 0.879 14 C -0.195 4.195 15 C -0.115 4.115 16 H 0.117 0.883 17 C -0.115 4.115 18 C -0.253 4.253 19 C -0.138 4.138 20 C 0.023 3.977 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.168 4.168 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.614 -6.842 -1.584 7.050 hybrid contribution 0.201 -2.015 0.260 2.042 sum 0.815 -8.857 -1.324 8.993 Atomic orbital electron populations 1.70576 1.07478 1.30854 1.39052 1.25992 0.95926 1.01883 0.93177 0.83505 0.75032 0.75429 0.76232 1.20993 1.21851 1.21326 1.19632 0.99091 0.87012 1.48997 0.91577 1.43541 1.48571 1.07296 1.17904 1.19283 0.83731 0.88297 0.81650 1.90623 1.61151 1.31308 1.56695 1.22450 0.94600 0.99912 1.02627 0.87899 1.22912 0.93136 1.02605 1.00835 1.21660 1.03410 0.97173 0.89217 0.88267 1.21300 1.01039 0.95533 0.93622 1.23288 1.07037 1.02635 0.92299 1.22398 0.93490 1.00257 0.97704 1.21728 0.94547 0.88651 0.92807 1.22638 0.97061 1.01864 0.94859 1.22423 0.95849 0.99019 0.98643 1.22252 0.96684 1.00818 0.95667 1.22446 0.97950 1.00255 0.96183 0.91968 0.89152 0.88482 0.88503 0.90141 0.90015 0.89314 0.90007 0.91461 0.89317 0.93126 0.92509 0.92299 0.92906 0.91600 0.93131 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.09 12.44 55.50 0.69 -24.40 16 2 C 0.04 1.19 4.18 -17.46 -0.07 1.12 16 3 Si 1.07 25.60 29.98 -169.99 -5.10 20.51 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.42 -11.21 7.28 -14.93 -0.11 -11.32 16 8 H 0.07 1.77 7.27 -52.49 -0.38 1.39 16 9 N -0.45 -10.79 2.19 -106.54 -0.23 -11.03 16 10 C 0.48 11.62 6.08 -10.99 -0.07 11.55 16 11 O -0.52 -14.01 9.47 5.54 0.05 -13.96 16 12 C -0.17 -3.35 4.99 -91.77 -0.46 -3.81 16 13 H 0.10 1.78 6.67 -51.93 -0.35 1.43 16 14 C -0.16 -2.72 9.95 -26.73 -0.27 -2.98 16 15 C -0.10 -1.68 5.87 -90.62 -0.53 -2.21 16 16 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.10 -1.85 4.48 -90.62 -0.41 -2.25 16 18 C -0.22 -3.53 10.25 -26.73 -0.27 -3.80 16 19 C -0.10 -2.03 7.08 -26.73 -0.19 -2.21 16 20 C 0.13 2.50 3.19 -66.81 -0.21 2.28 16 21 C -0.13 -2.36 6.41 -25.07 -0.16 -2.52 16 22 C -0.12 -1.85 6.91 -24.74 -0.17 -2.02 16 23 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 24 C -0.13 -2.28 6.21 -25.61 -0.16 -2.44 16 25 H 0.27 8.07 7.46 -40.82 -0.30 7.77 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 28 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.92 8.06 -51.93 -0.42 1.50 16 32 H 0.08 1.72 7.96 -51.93 -0.41 1.30 16 33 H 0.07 1.22 5.50 -51.93 -0.29 0.93 16 34 H 0.09 1.98 7.00 -51.93 -0.36 1.62 16 35 H 0.05 0.90 8.14 -51.94 -0.42 0.48 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.48 7.01 -51.93 -0.36 1.12 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -29.80 319.75 -9.76 -39.56 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.75 Total: 7.09 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -3.25 Total: -22.59 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.46 Total: -35.42 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.05 Total: -13.96 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.10 Total: 20.51 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.80 -9.76 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177420644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.238 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds