Wall clock time and date at job start Sun Mar 29 2020 23:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48497 * 109.47376 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47061 * 119.99932 * 3 2 1 6 6 H 1.48507 * 109.46652 * 239.99551 * 3 2 1 7 7 C 1.38951 * 119.99372 * 179.71973 * 2 1 3 8 8 H 1.07998 * 119.99424 * 204.03892 * 7 2 1 9 9 N 1.37103 * 120.00276 * 24.04256 * 7 2 1 10 10 C 1.34775 * 120.00029 * 43.85228 * 9 7 2 11 11 O 1.21301 * 119.99717 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00013 * 179.97438 * 10 9 7 13 13 H 1.09002 * 115.55407 * 325.72392 * 12 10 9 14 14 C 1.53001 * 117.49799 * 111.39124 * 12 10 9 15 15 C 1.53000 * 60.00057 * 107.49130 * 14 12 10 16 16 H 1.09002 * 117.49955 * 107.48889 * 15 14 12 17 17 C 1.53004 * 117.49784 * 252.51031 * 15 14 12 18 18 C 1.52996 * 117.49814 * 197.24438 * 17 15 14 19 19 C 1.53004 * 117.49701 * 128.62085 * 17 15 14 20 20 C 1.46500 * 119.99911 * 223.84998 * 9 7 2 21 21 C 1.54269 * 110.03131 * 57.10480 * 20 9 7 22 22 C 1.54892 * 104.19498 * 217.10695 * 21 20 9 23 23 C 1.54887 * 102.74970 * 37.93875 * 22 21 20 24 24 C 1.53877 * 110.03151 * 299.93809 * 20 9 7 25 25 H 0.96997 * 120.00354 * 185.12885 * 1 2 3 26 26 H 1.09003 * 117.49930 * 214.98064 * 14 12 10 27 27 H 1.08994 * 117.49809 * 359.97438 * 14 12 10 28 28 H 1.08999 * 115.54872 * 342.95257 * 17 15 14 29 29 H 1.09000 * 117.49925 * 359.97438 * 18 17 15 30 30 H 1.09000 * 117.50349 * 145.02209 * 18 17 15 31 31 H 1.08991 * 117.49707 * 214.98084 * 19 17 15 32 32 H 1.08996 * 117.49793 * 359.97438 * 19 17 15 33 33 H 1.08995 * 110.01525 * 178.54672 * 20 9 7 34 34 H 1.08999 * 110.48599 * 335.77973 * 21 20 9 35 35 H 1.08988 * 110.48618 * 98.42502 * 21 20 9 36 36 H 1.09000 * 110.75344 * 279.63127 * 22 21 20 37 37 H 1.08996 * 110.75656 * 156.25946 * 22 21 20 38 38 H 1.09001 * 110.49131 * 203.37978 * 23 22 21 39 39 H 1.08997 * 110.48601 * 80.73999 * 23 22 21 40 40 H 1.09001 * 110.03013 * 238.56919 * 24 20 9 41 41 H 1.08996 * 110.03395 * 359.94905 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2832 2.7464 -0.0006 5 1 3.1019 1.6963 1.2125 6 1 3.1020 1.6962 -1.2125 7 6 2.0088 -1.2034 0.0059 8 1 3.0185 -1.2421 0.3871 9 7 1.4124 -2.3416 -0.4723 10 6 0.7073 -2.3016 -1.6202 11 8 0.6008 -1.2588 -2.2305 12 6 0.0523 -3.5527 -2.1461 13 1 0.5938 -4.4804 -1.9607 14 6 -1.4764 -3.6112 -2.1271 15 6 -0.7337 -3.4423 -3.4541 16 1 -0.7094 -4.2975 -4.1296 17 6 -0.7946 -2.0701 -4.1281 18 6 -0.4173 -1.9930 -5.6088 19 6 0.5302 -1.4297 -4.5476 20 6 1.5416 -3.6012 0.2645 21 6 1.0156 -3.4275 1.7043 22 6 1.9757 -4.2851 2.5656 23 6 3.3486 -4.0437 1.8903 24 6 3.0250 -3.9929 0.3828 25 1 -0.4850 -0.8366 0.0751 26 1 -1.9407 -4.5774 -1.9296 27 1 -2.0083 -2.7449 -1.7339 28 1 -1.5843 -1.4073 -3.7744 29 1 -0.1253 -2.9198 -6.1027 30 1 -0.9589 -1.2794 -6.2297 31 1 0.6118 -0.3456 -4.4703 32 1 1.4450 -1.9858 -4.3430 33 1 0.9867 -4.3895 -0.2440 34 1 1.0653 -2.3810 2.0050 35 1 -0.0053 -3.8005 1.7850 36 1 1.7014 -5.3389 2.5168 37 1 1.9860 -3.9349 3.5977 38 1 4.0302 -4.8663 2.1066 39 1 3.7751 -3.0967 2.2210 40 1 3.1897 -4.9717 -0.0676 41 1 3.6487 -3.2463 -0.1088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177420644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:56 Heat of formation + Delta-G solvation = 6.533443 kcal Electronic energy + Delta-G solvation = -21327.490057 eV Core-core repulsion = 18401.525740 eV Total energy + Delta-G solvation = -2925.964317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11654 -39.30292 -37.75649 -35.89292 -35.12730 -33.22625 -29.50626 -28.32815 -27.23678 -24.87377 -24.07061 -23.10587 -21.65676 -21.47916 -21.22573 -20.22309 -18.34280 -17.94949 -16.77659 -16.41653 -16.21149 -15.68442 -15.57002 -15.48545 -15.00960 -14.60915 -14.14509 -13.88337 -13.48403 -13.17782 -12.70105 -12.57422 -12.42245 -12.26981 -12.17610 -12.02111 -11.97765 -11.92045 -11.85285 -11.75680 -11.59816 -11.42016 -11.34897 -10.76001 -10.60207 -10.37727 -9.56555 -9.17387 -8.42945 -5.89537 1.47211 1.58930 1.74248 2.15321 2.50646 2.84007 3.06113 3.24493 3.34560 3.74988 3.80795 3.86243 3.96512 4.07145 4.11595 4.26128 4.36055 4.40744 4.47424 4.59252 4.61657 4.63347 4.76127 4.78173 4.82332 4.84556 4.88402 5.02229 5.07105 5.12403 5.19356 5.23485 5.30755 5.36784 5.41237 5.43561 5.50543 5.59608 5.91689 6.31391 7.04640 7.35580 7.71611 8.37767 8.82826 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.009627 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.900210 B = 2907.914005 C = 4130.752815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C -0.003 4.003 3 Si 1.106 2.894 4 H -0.292 1.292 5 H -0.263 1.263 6 H -0.289 1.289 7 C -0.416 4.416 8 H 0.058 0.942 9 N -0.467 5.467 10 C 0.469 3.531 11 O -0.559 6.559 12 C -0.187 4.187 13 H 0.131 0.869 14 C -0.143 4.143 15 C -0.085 4.085 16 H 0.140 0.860 17 C -0.113 4.113 18 C -0.169 4.169 19 C -0.125 4.125 20 C 0.120 3.880 21 C -0.126 4.126 22 C -0.109 4.109 23 C -0.113 4.113 24 C -0.126 4.126 25 H 0.254 0.746 26 H 0.134 0.866 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 -12.440 -1.674 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.209 4.209 3 Si 0.930 3.070 4 H -0.218 1.218 5 H -0.188 1.188 6 H -0.216 1.216 7 C -0.543 4.543 8 H 0.075 0.925 9 N -0.189 5.189 10 C 0.258 3.742 11 O -0.440 6.440 12 C -0.209 4.209 13 H 0.149 0.851 14 C -0.181 4.181 15 C -0.103 4.103 16 H 0.158 0.842 17 C -0.132 4.132 18 C -0.206 4.206 19 C -0.162 4.162 20 C 0.017 3.983 21 C -0.164 4.164 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.165 4.165 25 H 0.064 0.936 26 H 0.152 0.848 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.893 -10.269 -2.027 10.505 hybrid contribution 0.147 -0.973 0.375 1.053 sum 1.040 -11.241 -1.652 11.409 Atomic orbital electron populations 1.70690 1.08344 1.29756 1.42694 1.27057 0.96032 1.04870 0.92952 0.83042 0.74321 0.72465 0.77160 1.21781 1.18834 1.21584 1.19661 0.98615 0.88313 1.47714 0.92468 1.43767 1.48504 1.08053 1.18610 1.20192 0.83020 0.89662 0.81312 1.90615 1.62195 1.33365 1.57799 1.22348 0.95747 0.98280 1.04493 0.85108 1.22955 0.91360 1.03420 1.00361 1.21849 1.01914 0.97242 0.89269 0.84190 1.21310 0.99259 0.96218 0.96391 1.23331 1.03170 1.03413 0.90657 1.22123 0.93797 0.98306 1.01978 1.22018 0.96443 0.87063 0.92819 1.22566 0.98624 0.99890 0.95340 1.22394 0.94093 0.99952 0.98203 1.22242 0.97599 1.01142 0.94084 1.22413 0.95674 1.00724 0.97650 0.93638 0.84772 0.91811 0.91473 0.87045 0.88524 0.92595 0.91489 0.89310 0.93962 0.92505 0.89369 0.91413 0.89510 0.93702 0.90013 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -55.01 12.44 21.66 0.27 -54.74 16 2 C 0.00 -0.16 4.18 84.93 0.36 0.19 16 3 Si 1.11 53.83 29.98 68.60 2.06 55.88 16 4 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 5 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.42 -23.06 7.28 84.04 0.61 -22.45 16 8 H 0.06 3.20 7.27 -2.91 -0.02 3.18 16 9 N -0.47 -22.90 2.19 -609.37 -1.33 -24.23 16 10 C 0.47 23.09 6.08 87.65 0.53 23.63 16 11 O -0.56 -31.68 9.47 -3.09 -0.03 -31.71 16 12 C -0.19 -6.89 4.99 -11.54 -0.06 -6.95 16 13 H 0.13 4.05 6.67 -2.39 -0.02 4.03 16 14 C -0.14 -4.67 9.95 30.59 0.30 -4.36 16 15 C -0.08 -2.74 5.87 -10.79 -0.06 -2.80 16 16 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 17 C -0.11 -4.30 4.48 -10.79 -0.05 -4.35 16 18 C -0.17 -5.16 10.25 30.59 0.31 -4.84 16 19 C -0.12 -5.11 7.08 30.60 0.22 -4.90 16 20 C 0.12 4.60 3.19 45.72 0.15 4.74 16 21 C -0.13 -4.65 6.41 31.67 0.20 -4.44 16 22 C -0.11 -3.00 6.91 31.89 0.22 -2.78 16 23 C -0.11 -3.26 6.83 31.67 0.22 -3.04 16 24 C -0.13 -4.21 6.21 31.32 0.19 -4.01 16 25 H 0.25 16.16 7.46 -92.71 -0.69 15.46 16 26 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.06 2.60 8.06 -2.39 -0.02 2.58 16 32 H 0.07 2.89 7.96 -2.39 -0.02 2.87 16 33 H 0.09 2.97 5.50 -2.39 -0.01 2.96 16 34 H 0.04 1.95 7.00 -2.39 -0.02 1.93 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.04 1.66 7.01 -2.39 -0.02 1.64 16 Total: -1.00 -70.91 319.75 5.19 -65.73 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 1.07 Total: 25.46 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 3.15 Total: -36.38 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -1.06 Total: -78.97 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.03 Total: -31.71 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 2.06 Total: 55.88 kcal Total: -70.91 5.19 -65.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177420644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.260 kcal (2) G-P(sol) polarization free energy of solvation -70.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds