Wall clock time and date at job start Mon Mar 30 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38286 * 119.96980 * 2 1 4 4 C 1.38246 * 120.10953 * 179.76601 * 3 2 1 5 5 C 1.38160 * 120.05609 * 0.50512 * 4 3 2 6 6 C 1.50699 * 120.03319 * 179.77039 * 5 4 3 7 7 H 1.08998 * 109.47629 * 219.72846 * 6 5 4 8 8 C 1.52997 * 109.47156 * 99.72191 * 6 5 4 9 9 N 1.46904 * 109.46851 * 339.72639 * 6 5 4 10 10 C 1.46899 * 111.00029 * 204.99994 * 9 6 5 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 6 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47306 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47019 * 120.00329 * 17 15 13 20 20 H 1.48498 * 109.47326 * 240.00104 * 17 15 13 21 21 C 1.38716 * 119.94162 * 359.49239 * 5 4 3 22 22 O 1.35903 * 120.05276 * 180.27079 * 21 5 4 23 23 C 1.38116 * 119.97362 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47244 * 269.98131 * 1 2 3 25 25 H 1.09005 * 109.46967 * 29.98484 * 1 2 3 26 26 H 1.09000 * 109.46866 * 149.97627 * 1 2 3 27 27 H 1.07998 * 119.94683 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.97135 * 180.25397 * 4 3 2 29 29 H 1.09007 * 109.47280 * 300.00182 * 8 6 5 30 30 H 1.08997 * 109.47489 * 60.00240 * 8 6 5 31 31 H 1.09007 * 109.47004 * 180.02562 * 8 6 5 32 32 H 1.00908 * 110.99583 * 328.94906 * 9 6 5 33 33 H 1.09002 * 109.47043 * 299.99792 * 10 9 6 34 34 H 1.09001 * 109.47354 * 59.99854 * 10 9 6 35 35 H 1.09002 * 109.47153 * 300.00004 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 37 37 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 38 38 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 39 39 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 40 40 H 0.96708 * 113.99634 * 90.00612 * 22 21 5 41 41 H 1.08004 * 120.02635 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 0.0049 5 6 4.2752 0.0072 -0.0008 6 6 5.7822 0.0115 -0.0007 7 1 6.1479 -0.7746 -0.6612 8 6 6.2928 -0.2373 1.4199 9 7 6.2681 1.3145 -0.4744 10 6 7.6158 1.1972 -1.0470 11 6 8.0866 2.5709 -1.5288 12 6 9.4904 2.4490 -2.1246 13 6 9.9538 3.8020 -2.5997 14 1 9.3115 4.6629 -2.4875 15 6 11.1983 3.9410 -3.1766 16 7 11.9809 2.8928 -3.3128 17 14 11.7724 5.6180 -3.7662 18 1 10.7141 6.6252 -3.5005 19 1 13.0115 5.9998 -3.0420 20 1 12.0486 5.5623 -5.2242 21 6 3.5846 -1.1958 -0.0007 22 8 4.2659 -2.3717 -0.0007 23 6 2.1971 -1.1964 -0.0005 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6565 2.1325 0.0004 28 1 4.1176 2.1382 0.0090 29 1 5.9272 0.5489 2.0805 30 1 5.9323 -1.2040 1.7715 31 1 7.3829 -0.2338 1.4201 32 1 5.6266 1.7195 -1.1396 33 1 8.3022 0.8235 -0.2871 34 1 7.5940 0.5052 -1.8889 35 1 7.4001 2.9443 -2.2887 36 1 8.1083 3.2633 -0.6872 37 1 10.1766 2.0758 -1.3643 38 1 9.4691 1.7566 -2.9661 39 1 12.8562 2.9906 -3.7191 40 1 4.4630 -2.7120 0.8828 41 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185339441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:20 Heat of formation + Delta-G solvation = -42.299880 kcal Electronic energy + Delta-G solvation = -19127.136268 eV Core-core repulsion = 16199.054379 eV Total energy + Delta-G solvation = -2928.081889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30536 -37.07082 -36.94060 -34.13992 -32.58335 -31.27024 -30.09703 -29.30017 -26.99811 -25.86568 -23.02139 -22.90945 -21.79977 -20.36885 -20.00619 -18.03475 -16.59199 -16.38509 -16.02828 -15.39417 -15.06781 -14.49154 -14.20328 -14.02795 -13.91820 -13.77715 -13.43595 -12.80164 -12.58934 -12.28522 -12.12563 -12.06705 -11.81420 -11.73402 -11.47609 -11.39464 -11.00236 -10.78382 -10.55561 -10.50000 -10.36562 -9.66433 -9.31138 -9.01784 -8.92561 -8.57961 -8.31802 -8.17355 -5.96737 -3.98651 1.06849 1.17495 3.33311 3.40535 3.42392 3.45168 4.03797 4.31508 4.50310 4.54877 4.74269 4.76726 5.09068 5.11850 5.29632 5.31987 5.39109 5.43450 5.52052 5.56754 5.69056 5.75274 5.81949 5.91782 5.94349 5.99918 6.20117 6.26097 6.34035 6.38515 6.39733 6.68720 6.75400 6.82594 7.17179 7.37559 7.48396 7.63234 7.72366 7.87417 8.04094 8.47352 9.08890 9.65238 11.14819 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033279 B = 0.003156 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.174456 B = 8869.345486 C = 9396.131526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C -0.128 4.128 4 C -0.090 4.090 5 C -0.111 4.111 6 C 0.124 3.876 7 H 0.058 0.942 8 C -0.131 4.131 9 N -0.686 5.686 10 C 0.058 3.942 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.111 3.889 22 O -0.496 6.496 23 C -0.148 4.148 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.339 0.661 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.259 0.741 40 H 0.387 0.613 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.593 -8.776 9.758 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.079 4.079 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.112 4.112 6 C 0.014 3.986 7 H 0.076 0.924 8 C -0.188 4.188 9 N -0.318 5.318 10 C -0.070 4.070 11 C -0.144 4.144 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.066 3.934 22 O -0.306 6.306 23 C -0.166 4.166 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.243 0.757 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.219 -8.581 9.699 24.859 hybrid contribution 0.322 0.287 -0.737 0.854 sum -20.898 -8.295 8.961 24.203 Atomic orbital electron populations 1.20789 0.91056 1.02850 1.02307 1.19779 0.96057 0.92710 0.99358 1.21091 0.94219 0.97549 1.01765 1.21082 0.93724 0.98213 0.97773 1.20383 0.96122 0.92788 1.01926 1.20297 0.88829 0.92053 0.97413 0.92444 1.21706 1.01531 1.00398 0.95207 1.60769 1.04766 1.22258 1.44044 1.22184 0.88591 0.99197 0.97022 1.21615 0.99485 0.93843 0.99483 1.19068 0.89831 0.97048 0.95660 1.21300 1.00811 0.94584 1.38870 0.92623 1.25039 0.96846 0.96618 0.96095 1.69981 1.09748 1.29075 1.44834 0.86542 0.78656 0.84470 0.78371 1.19720 1.21032 1.21065 1.18265 0.89644 0.84817 1.00705 1.84818 1.76308 1.36114 1.33320 1.21211 0.93210 0.98283 1.03911 0.91154 0.91368 0.91608 0.85789 0.84222 0.92006 0.93356 0.91925 0.84244 0.91371 0.95676 0.93702 0.92546 0.96573 0.96816 0.93110 0.75683 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.08 -0.75 5.88 -104.65 -0.62 -1.37 16 3 C -0.13 -1.28 9.70 -39.56 -0.38 -1.67 16 4 C -0.09 -1.03 8.87 -39.61 -0.35 -1.38 16 5 C -0.11 -1.37 5.00 -104.47 -0.52 -1.89 16 6 C 0.12 1.65 2.49 -68.86 -0.17 1.48 16 7 H 0.06 0.85 7.51 -51.93 -0.39 0.46 16 8 C -0.13 -1.55 9.39 37.16 0.35 -1.20 16 9 N -0.69 -10.32 5.61 -107.95 -0.61 -10.92 16 10 C 0.06 1.05 5.48 -3.83 -0.02 1.02 16 11 C -0.11 -2.25 5.41 -26.74 -0.14 -2.39 16 12 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 13 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.11 1.27 6.67 -39.22 -0.26 1.01 16 22 O -0.50 -5.26 12.67 -19.44 -0.25 -5.51 16 23 C -0.15 -1.51 9.64 -39.44 -0.38 -1.89 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.14 1.59 6.72 -52.49 -0.35 1.24 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.46 7.64 -51.93 -0.40 0.06 16 31 H 0.06 0.79 7.45 -51.92 -0.39 0.41 16 32 H 0.34 4.91 6.99 -39.29 -0.27 4.63 16 33 H 0.07 1.23 7.44 -51.93 -0.39 0.85 16 34 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.39 2.39 8.64 45.56 0.39 2.78 16 41 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -32.13 338.14 -8.71 -40.84 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.98 Total: 2.27 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -2.69 Total: -22.04 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.13 Total: -37.66 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.25 Total: -5.51 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.13 -8.71 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185339441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.460 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds