Wall clock time and date at job start Mon Mar 30 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38286 * 119.96980 * 2 1 4 4 C 1.38246 * 120.10953 * 179.76601 * 3 2 1 5 5 C 1.38160 * 120.05609 * 0.50512 * 4 3 2 6 6 C 1.50699 * 120.03319 * 179.77039 * 5 4 3 7 7 H 1.08998 * 109.47629 * 219.72846 * 6 5 4 8 8 C 1.52997 * 109.47156 * 99.72191 * 6 5 4 9 9 N 1.46904 * 109.46851 * 339.72639 * 6 5 4 10 10 C 1.46899 * 111.00029 * 204.99994 * 9 6 5 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 6 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47306 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47019 * 120.00329 * 17 15 13 20 20 H 1.48498 * 109.47326 * 240.00104 * 17 15 13 21 21 C 1.38716 * 119.94162 * 359.49239 * 5 4 3 22 22 O 1.35903 * 120.05276 * 180.27079 * 21 5 4 23 23 C 1.38116 * 119.97362 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47244 * 269.98131 * 1 2 3 25 25 H 1.09005 * 109.46967 * 29.98484 * 1 2 3 26 26 H 1.09000 * 109.46866 * 149.97627 * 1 2 3 27 27 H 1.07998 * 119.94683 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.97135 * 180.25397 * 4 3 2 29 29 H 1.09007 * 109.47280 * 300.00182 * 8 6 5 30 30 H 1.08997 * 109.47489 * 60.00240 * 8 6 5 31 31 H 1.09007 * 109.47004 * 180.02562 * 8 6 5 32 32 H 1.00908 * 110.99583 * 328.94906 * 9 6 5 33 33 H 1.09002 * 109.47043 * 299.99792 * 10 9 6 34 34 H 1.09001 * 109.47354 * 59.99854 * 10 9 6 35 35 H 1.09002 * 109.47153 * 300.00004 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 37 37 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 38 38 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 39 39 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 40 40 H 0.96708 * 113.99634 * 90.00612 * 22 21 5 41 41 H 1.08004 * 120.02635 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 0.0049 5 6 4.2752 0.0072 -0.0008 6 6 5.7822 0.0115 -0.0007 7 1 6.1479 -0.7746 -0.6612 8 6 6.2928 -0.2373 1.4199 9 7 6.2681 1.3145 -0.4744 10 6 7.6158 1.1972 -1.0470 11 6 8.0866 2.5709 -1.5288 12 6 9.4904 2.4490 -2.1246 13 6 9.9538 3.8020 -2.5997 14 1 9.3115 4.6629 -2.4875 15 6 11.1983 3.9410 -3.1766 16 7 11.9809 2.8928 -3.3128 17 14 11.7724 5.6180 -3.7662 18 1 10.7141 6.6252 -3.5005 19 1 13.0115 5.9998 -3.0420 20 1 12.0486 5.5623 -5.2242 21 6 3.5846 -1.1958 -0.0007 22 8 4.2659 -2.3717 -0.0007 23 6 2.1971 -1.1964 -0.0005 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6565 2.1325 0.0004 28 1 4.1176 2.1382 0.0090 29 1 5.9272 0.5489 2.0805 30 1 5.9323 -1.2040 1.7715 31 1 7.3829 -0.2338 1.4201 32 1 5.6266 1.7195 -1.1396 33 1 8.3022 0.8235 -0.2871 34 1 7.5940 0.5052 -1.8889 35 1 7.4001 2.9443 -2.2887 36 1 8.1083 3.2633 -0.6872 37 1 10.1766 2.0758 -1.3643 38 1 9.4691 1.7566 -2.9661 39 1 12.8562 2.9906 -3.7191 40 1 4.4630 -2.7120 0.8828 41 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185339441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:20 Heat of formation + Delta-G solvation = -63.031319 kcal Electronic energy + Delta-G solvation = -19128.035250 eV Core-core repulsion = 16199.054379 eV Total energy + Delta-G solvation = -2928.980871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13915 -38.21785 -37.78369 -35.90963 -34.19518 -32.51780 -31.03439 -30.54303 -28.00041 -27.45333 -24.62835 -23.76479 -22.89437 -21.96017 -21.17634 -18.85448 -18.48078 -17.54018 -17.12627 -16.54822 -16.46120 -15.99188 -15.34810 -15.20538 -15.02462 -14.58305 -14.35861 -14.34250 -13.71149 -13.50544 -13.34680 -13.34384 -13.00056 -12.83550 -12.77522 -12.45919 -12.44722 -12.33650 -12.18443 -11.95937 -11.52356 -11.46087 -11.28982 -11.03998 -10.56732 -9.72526 -9.52396 -9.31462 -8.20851 -6.32070 0.27438 0.37492 1.39769 1.40206 1.53998 2.40651 2.65022 3.11302 3.12294 3.30940 3.65125 3.98375 4.05910 4.19772 4.26584 4.28458 4.43687 4.48844 4.51453 4.67785 4.75601 4.77347 4.85459 4.89916 4.93060 4.98411 5.05414 5.13148 5.21742 5.25690 5.33532 5.39924 5.48067 5.53857 5.63611 5.73588 5.84873 5.94950 6.06397 6.26036 6.40250 6.82624 6.85084 7.37303 8.91499 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033279 B = 0.003156 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.174456 B = 8869.345486 C = 9396.131526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.077 4.077 3 C -0.133 4.133 4 C -0.099 4.099 5 C -0.131 4.131 6 C 0.128 3.872 7 H 0.041 0.959 8 C -0.127 4.127 9 N -0.681 5.681 10 C 0.072 3.928 11 C -0.091 4.091 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.104 3.896 22 O -0.508 6.508 23 C -0.154 4.154 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.342 0.658 33 H 0.064 0.936 34 H 0.017 0.983 35 H 0.049 0.951 36 H 0.056 0.944 37 H -0.008 1.008 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.405 0.595 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.479 -8.091 10.148 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.151 4.151 4 C -0.118 4.118 5 C -0.131 4.131 6 C 0.018 3.982 7 H 0.059 0.941 8 C -0.185 4.185 9 N -0.313 5.313 10 C -0.057 4.057 11 C -0.129 4.129 12 C -0.013 4.013 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 C 0.059 3.941 22 O -0.321 6.321 23 C -0.173 4.173 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.161 0.839 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.010 0.990 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.264 0.736 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.124 -7.905 10.110 26.447 hybrid contribution 0.860 0.003 -0.838 1.201 sum -22.264 -7.901 9.272 25.379 Atomic orbital electron populations 1.20852 0.88883 1.03760 1.03384 1.20152 0.97669 0.92210 0.97723 1.21344 0.93710 0.98768 1.01303 1.21134 0.94581 0.97754 0.98303 1.20310 0.95169 0.93676 1.03992 1.20253 0.90051 0.90246 0.97620 0.94105 1.21688 1.00697 1.01752 0.94348 1.60724 1.03443 1.23599 1.43543 1.21879 0.90290 0.96853 0.96664 1.21359 0.96467 0.95797 0.99232 1.18971 0.92470 0.95609 0.94217 1.21728 1.01429 0.95567 1.39256 0.92143 1.26025 0.96940 1.01039 0.96053 1.70112 1.10275 1.31628 1.45535 0.85363 0.78357 0.79199 0.77910 1.18492 1.20272 1.20330 1.18390 0.90284 0.84683 1.00747 1.84769 1.76364 1.35852 1.35084 1.21447 0.92777 0.99370 1.03680 0.89868 0.90438 0.90780 0.83864 0.84636 0.92162 0.90907 0.93122 0.83817 0.91727 0.96482 0.93203 0.92535 0.98973 0.99321 0.92756 0.73625 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.08 -1.30 5.88 -19.88 -0.12 -1.42 16 3 C -0.13 -2.43 9.70 22.28 0.22 -2.21 16 4 C -0.10 -2.19 8.87 22.25 0.20 -2.00 16 5 C -0.13 -3.12 5.00 -19.77 -0.10 -3.22 16 6 C 0.13 3.39 2.49 44.17 0.11 3.50 16 7 H 0.04 1.22 7.51 -2.39 -0.02 1.21 16 8 C -0.13 -2.95 9.39 71.98 0.68 -2.28 16 9 N -0.68 -20.49 5.61 -495.45 -2.78 -23.26 16 10 C 0.07 2.63 5.48 86.30 0.47 3.11 16 11 C -0.09 -3.89 5.41 30.59 0.17 -3.72 16 12 C 0.02 1.37 4.97 29.84 0.15 1.51 16 13 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 16 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 17 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C 0.10 2.27 6.67 22.51 0.15 2.42 16 22 O -0.51 -10.25 12.67 -92.46 -1.17 -11.42 16 23 C -0.15 -2.86 9.64 22.36 0.22 -2.65 16 24 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.08 0.69 8.09 -2.38 -0.02 0.67 16 26 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 27 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 28 H 0.14 3.01 6.72 -2.91 -0.02 2.99 16 29 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.30 7.64 -2.39 -0.02 1.28 16 31 H 0.05 1.28 7.45 -2.38 -0.02 1.26 16 32 H 0.34 9.87 6.99 -89.69 -0.63 9.25 16 33 H 0.06 2.40 7.44 -2.39 -0.02 2.38 16 34 H 0.02 0.64 8.06 -2.39 -0.02 0.63 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.41 4.44 8.64 -74.05 -0.64 3.81 16 41 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -69.04 338.14 1.66 -67.38 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.25 Total: 16.78 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 3.55 Total: -38.68 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -2.49 Total: -81.21 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.17 Total: -11.42 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.04 1.66 -67.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185339441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.350 kcal (2) G-P(sol) polarization free energy of solvation -69.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds