Wall clock time and date at job start Sun Mar 29 2020 23:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99777 * 2 1 4 4 H 1.48513 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47364 * 299.99584 * 3 2 1 6 6 H 1.48503 * 109.47270 * 59.99994 * 3 2 1 7 7 C 1.37879 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47248 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99717 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00195 * 180.02562 * 10 9 7 13 13 C 1.46496 * 119.99714 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46742 * 204.99733 * 13 12 10 15 15 C 1.52999 * 109.47592 * 299.99995 * 14 13 12 16 16 C 1.52997 * 109.46991 * 300.00342 * 15 14 13 17 17 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 18 18 C 1.53002 * 109.46972 * 60.00459 * 17 16 15 19 19 C 1.52997 * 109.46817 * 299.99733 * 18 17 16 20 20 C 1.52997 * 109.47415 * 59.99860 * 18 17 16 21 21 C 1.53002 * 109.47045 * 85.00189 * 13 12 10 22 22 C 1.53002 * 109.47454 * 59.99478 * 21 13 12 23 23 H 0.96996 * 120.00105 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47047 * 59.99944 * 9 7 2 25 25 H 1.09001 * 109.47285 * 300.00085 * 9 7 2 26 26 H 0.96998 * 119.99395 * 359.97438 * 12 10 9 27 27 H 1.09001 * 109.47450 * 325.00011 * 13 12 10 28 28 H 1.09000 * 109.47140 * 60.00341 * 14 13 12 29 29 H 1.09002 * 109.46719 * 60.00054 * 15 14 13 30 30 H 1.08993 * 109.47839 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.47289 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.47452 * 300.00000 * 17 16 15 33 33 H 1.09000 * 109.47054 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.47502 * 300.00518 * 19 18 17 36 36 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47140 * 59.99976 * 20 18 17 38 38 H 1.08998 * 109.47624 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.47006 * 299.99580 * 21 13 12 40 40 H 1.08999 * 109.46623 * 179.97438 * 22 21 13 41 41 H 1.09002 * 109.47067 * 300.00138 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0018 11 8 3.4228 -3.4230 0.0022 12 7 1.7812 -4.9154 0.0015 13 6 2.7332 -6.0288 0.0022 14 6 2.0714 -7.2660 -0.6078 15 6 0.8413 -7.6463 0.2187 16 6 1.2673 -7.9521 1.6560 17 6 2.2615 -9.1150 1.6567 18 6 3.4917 -8.7348 0.8302 19 6 3.0656 -8.4289 -0.6071 20 6 4.1535 -7.4976 1.4402 21 6 3.1592 -6.3347 1.4395 22 6 1.9291 -6.7149 2.2661 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 0.8275 -5.0925 0.0008 27 1 3.6096 -5.7579 -0.5867 28 1 1.7679 -7.0480 -1.6318 29 1 0.1330 -6.8178 0.2182 30 1 0.3695 -8.5274 -0.2161 31 1 0.3909 -8.2227 2.2450 32 1 1.7901 -9.9965 1.2221 33 1 2.5647 -9.3332 2.6807 34 1 4.2002 -9.5631 0.8310 35 1 2.5941 -9.3103 -1.0418 36 1 3.9420 -8.1585 -1.1961 37 1 4.4570 -7.7155 2.4641 38 1 5.0296 -7.2264 0.8511 39 1 3.6307 -5.4532 1.8741 40 1 2.2328 -6.9332 3.2899 41 1 1.2208 -5.8864 2.2656 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216555357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:45 Heat of formation + Delta-G solvation = -95.175699 kcal Electronic energy + Delta-G solvation = -20931.648733 eV Core-core repulsion = 18001.273977 eV Total energy + Delta-G solvation = -2930.374756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.54807 -40.01775 -35.66294 -35.10257 -33.57388 -33.48904 -32.23019 -30.59472 -26.77096 -26.75834 -25.24661 -22.66752 -22.33555 -22.21188 -20.88675 -18.79726 -18.48708 -17.57598 -16.81274 -16.36737 -16.14399 -15.97128 -15.28437 -15.09248 -14.81312 -14.46009 -14.28065 -14.21999 -14.05839 -13.44814 -13.37357 -13.33806 -13.21569 -12.81599 -12.61808 -12.45033 -12.07274 -11.94921 -11.81573 -11.71807 -11.71529 -11.45153 -10.79395 -10.68175 -10.64386 -10.53041 -10.39883 -9.82058 -8.27011 -6.34257 1.37823 1.38193 1.53539 1.90677 2.33864 2.53219 3.08061 3.55521 3.59938 3.70890 4.06010 4.16866 4.25270 4.30553 4.32867 4.37931 4.42695 4.47400 4.54204 4.58058 4.80159 4.81962 4.85846 4.93405 5.04160 5.10426 5.13363 5.16596 5.19488 5.20662 5.24287 5.25098 5.27399 5.51153 5.57084 5.60491 5.61950 5.67899 5.78603 6.05015 6.71641 6.84573 7.32519 7.54519 8.85499 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040077 B = 0.004653 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.484394 B = 6015.613202 C = 6177.818199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.008 3.992 10 C 0.518 3.482 11 O -0.587 6.587 12 N -0.719 5.719 13 C 0.154 3.846 14 C -0.088 4.088 15 C -0.108 4.108 16 C -0.082 4.082 17 C -0.102 4.102 18 C -0.083 4.083 19 C -0.102 4.102 20 C -0.103 4.103 21 C -0.096 4.096 22 C -0.105 4.105 23 H 0.267 0.733 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.406 0.594 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 -22.443 2.023 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.071 0.929 9 C -0.031 4.031 10 C 0.307 3.693 11 O -0.467 6.467 12 N -0.372 5.372 13 C 0.050 3.950 14 C -0.107 4.107 15 C -0.146 4.146 16 C -0.101 4.101 17 C -0.139 4.139 18 C -0.101 4.101 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.116 4.116 22 C -0.143 4.143 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.243 0.757 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.738 -22.174 2.016 22.333 hybrid contribution 0.023 1.518 0.025 1.518 sum 1.762 -20.656 2.041 20.831 Atomic orbital electron populations 1.70036 1.07120 1.28037 1.51245 1.25795 0.95866 1.02744 0.94448 0.85402 0.78518 0.78818 0.78323 1.20123 1.19569 1.19642 1.21384 0.93582 0.91323 1.51104 0.92907 1.19072 0.94303 0.91170 0.98592 1.21441 0.89778 0.84834 0.73273 1.90499 1.19264 1.85557 1.51382 1.46151 1.10596 1.04716 1.75727 1.20914 0.91809 0.86114 0.96182 1.21300 0.96763 0.93417 0.99195 1.21580 0.96010 1.01917 0.95064 1.21061 0.98463 0.94555 0.95995 1.21525 0.94882 0.97309 1.00204 1.21086 0.97580 0.96813 0.94652 1.21521 0.98229 0.97482 0.96782 1.21508 0.96847 0.94412 1.01386 1.21354 0.97184 0.97601 0.95487 1.21489 0.96127 0.98043 0.98604 0.92363 0.94162 0.94293 0.75727 0.93134 0.90778 0.92555 0.89302 0.89923 0.90060 0.91497 0.89363 0.89207 0.92376 0.91131 0.92941 0.95096 0.91696 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.12 13.29 21.45 0.28 -54.83 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.96 46.37 29.54 68.60 2.03 48.40 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.54 -32.66 8.92 25.60 0.23 -32.43 16 8 H 0.05 3.40 6.75 -2.91 -0.02 3.39 16 9 C 0.01 0.44 5.46 29.10 0.16 0.60 16 10 C 0.52 24.98 7.79 87.66 0.68 25.67 16 11 O -0.59 -32.73 15.12 -3.03 -0.05 -32.78 16 12 N -0.72 -25.83 4.23 -442.53 -1.87 -27.70 16 13 C 0.15 4.75 2.05 44.99 0.09 4.84 16 14 C -0.09 -1.89 2.88 -10.79 -0.03 -1.93 16 15 C -0.11 -1.95 5.02 30.59 0.15 -1.79 16 16 C -0.08 -1.46 3.19 -10.79 -0.03 -1.50 16 17 C -0.10 -1.46 5.19 30.59 0.16 -1.30 16 18 C -0.08 -1.36 3.19 -10.79 -0.03 -1.40 16 19 C -0.10 -1.75 5.19 30.60 0.16 -1.59 16 20 C -0.10 -2.32 5.19 30.60 0.16 -2.16 16 21 C -0.10 -2.79 2.87 -10.79 -0.03 -2.82 16 22 C -0.11 -2.56 5.04 30.60 0.15 -2.41 16 23 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 24 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.04 2.11 8.14 -2.39 -0.02 2.10 16 26 H 0.41 12.50 6.87 -92.71 -0.64 11.87 16 27 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.10 6.51 -2.39 -0.02 1.08 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.28 7.60 -2.39 -0.02 1.26 16 Total: -1.00 -71.07 308.56 3.04 -68.03 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.37 Total: 16.07 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 2.28 Total: -17.17 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -1.59 Total: -82.54 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.05 Total: -32.78 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -71.07 3.04 -68.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216555357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.150 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds