Wall clock time and date at job start Mon Mar 30 2020 00:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99565 * 90.00026 * 10 9 7 12 12 C 1.53005 * 109.47121 * 90.00318 * 11 10 9 13 13 C 1.52997 * 117.49802 * 243.74662 * 12 11 10 14 14 C 1.53001 * 117.49992 * 175.08494 * 12 11 10 15 15 C 1.34773 * 120.00093 * 270.00477 * 10 9 7 16 16 O 1.21278 * 120.00446 * 359.97438 * 15 10 9 17 17 C 1.50707 * 119.99705 * 180.02562 * 15 10 9 18 18 H 1.08998 * 115.52331 * 325.48913 * 17 15 10 19 19 C 1.52999 * 117.45965 * 110.95654 * 17 15 10 20 20 H 1.08996 * 119.30097 * 356.28671 * 19 17 15 21 21 C 1.54269 * 118.19758 * 201.21332 * 19 17 15 22 22 C 1.54889 * 104.19349 * 272.21056 * 21 19 17 23 23 C 1.57047 * 102.88567 * 38.08755 * 22 21 19 24 24 C 1.53000 * 117.45825 * 179.97438 * 17 15 10 25 25 H 1.08998 * 119.29971 * 3.70550 * 24 17 15 26 26 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 28 28 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 29 29 H 1.09004 * 109.47349 * 209.99984 * 11 10 9 30 30 H 1.08998 * 109.47759 * 330.00045 * 11 10 9 31 31 H 1.09001 * 115.54735 * 29.40986 * 12 11 10 32 32 H 1.09010 * 117.49874 * 359.97438 * 13 12 11 33 33 H 1.08995 * 117.50505 * 145.01687 * 13 12 11 34 34 H 1.08990 * 117.49631 * 214.97830 * 14 12 11 35 35 H 1.09004 * 117.50013 * 359.97438 * 14 12 11 36 36 H 1.09001 * 110.48403 * 30.88742 * 21 19 17 37 37 H 1.08991 * 110.48756 * 153.52857 * 21 19 17 38 38 H 1.09001 * 110.75745 * 156.25222 * 22 21 19 39 39 H 1.09001 * 110.75735 * 279.62812 * 22 21 19 40 40 H 1.08998 * 110.56115 * 203.84547 * 23 22 21 41 41 H 1.08998 * 111.38441 * 80.52191 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6790 -4.1694 1.2693 12 6 1.7483 -5.3007 1.7110 13 6 0.9695 -5.1068 3.0135 14 6 2.1407 -6.0911 2.9609 15 6 2.6411 -4.1248 -1.1666 16 8 2.2468 -3.6643 -2.2170 17 6 3.6200 -5.2707 -1.1665 18 1 4.3485 -5.2660 -0.3558 19 6 3.1144 -6.6306 -1.6524 20 1 2.0642 -6.7443 -1.9210 21 6 3.8851 -7.8934 -1.2153 22 6 4.9834 -8.0606 -2.2945 23 6 5.4124 -6.5791 -2.5901 24 6 4.0781 -5.8073 -2.5241 25 1 3.7378 -5.3146 -3.4349 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 0.8902 28 1 0.6248 -2.5571 -0.8897 29 1 3.6885 -4.5594 1.1391 30 1 2.6868 -3.3878 2.0290 31 1 1.2547 -5.8448 0.9057 32 1 1.1205 -4.1735 3.5561 33 1 -0.0362 -5.5237 3.0655 34 1 1.9050 -7.1550 2.9780 35 1 3.0622 -5.8054 3.4683 36 1 4.3344 -7.7453 -0.2333 37 1 3.2239 -8.7598 -1.2064 38 1 5.8253 -8.6322 -1.9036 39 1 4.5772 -8.5321 -3.1893 40 1 5.8509 -6.4987 -3.5847 41 1 6.1057 -6.2080 -1.8353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247371479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:02 Heat of formation + Delta-G solvation = 7.078697 kcal Electronic energy + Delta-G solvation = -20276.744398 eV Core-core repulsion = 17350.803725 eV Total energy + Delta-G solvation = -2925.940673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02448 -38.12007 -36.97190 -34.33219 -32.54063 -31.48431 -28.23843 -27.97727 -26.12213 -24.19207 -22.18709 -21.99051 -20.68120 -20.49973 -19.51775 -18.33820 -16.82105 -16.45245 -15.71618 -15.13589 -14.87666 -14.60783 -14.40646 -13.93293 -13.44043 -13.13161 -12.75921 -12.53611 -12.22358 -12.11243 -11.48111 -11.35386 -11.32346 -11.22436 -11.18815 -11.10848 -10.91527 -10.84326 -10.60762 -10.26568 -10.09096 -9.86563 -9.76220 -9.58360 -9.51402 -8.82413 -8.40482 -7.63040 -6.01563 -4.06076 3.14179 3.32832 3.38806 3.41277 3.77098 4.03197 4.07019 4.45832 4.60369 4.78364 4.83083 5.01373 5.11919 5.17040 5.25952 5.29669 5.32633 5.43673 5.45074 5.50000 5.57709 5.71598 5.72685 5.77585 5.79509 5.92891 5.97471 6.04024 6.07790 6.10462 6.18757 6.30515 6.34774 6.48303 6.53052 7.13457 7.48460 7.59350 7.95364 8.26938 8.47306 8.93509 9.14969 9.58920 11.06472 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.006041 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.306003 B = 4633.527557 C = 5719.279195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.589 5.589 11 C 0.144 3.856 12 C -0.161 4.161 13 C -0.176 4.176 14 C -0.181 4.181 15 C 0.534 3.466 16 O -0.541 6.541 17 C -0.154 4.154 18 H 0.115 0.885 19 C -0.140 4.140 20 H 0.110 0.890 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.096 4.096 24 C -0.138 4.138 25 H 0.119 0.881 26 H 0.263 0.737 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 -16.347 2.719 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.128 3.872 10 N -0.319 5.319 11 C 0.019 3.981 12 C -0.180 4.180 13 C -0.213 4.213 14 C -0.219 4.219 15 C 0.321 3.679 16 O -0.419 6.419 17 C -0.175 4.175 18 H 0.132 0.868 19 C -0.158 4.158 20 H 0.128 0.872 21 C -0.131 4.131 22 C -0.160 4.160 23 C -0.133 4.133 24 C -0.157 4.157 25 H 0.137 0.863 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.730 -15.943 2.167 17.850 hybrid contribution 0.315 1.056 0.151 1.112 sum 8.045 -14.887 2.319 17.080 Atomic orbital electron populations 1.69938 1.05974 1.26927 1.50541 1.24929 0.94864 0.99156 0.95117 0.86513 0.79663 0.83113 0.78219 1.20566 1.21158 1.19943 1.21450 0.93332 0.90720 1.50938 0.92516 1.19273 0.87444 0.82045 0.98408 1.48101 1.45381 1.34580 1.03836 1.21019 0.95451 0.94212 0.87385 1.22857 1.02833 1.00618 0.91728 1.23017 0.96116 1.01060 1.01156 1.22908 0.99617 0.97185 1.02150 1.19366 0.81530 0.82866 0.84158 1.90657 1.58370 1.61706 1.31170 1.22486 1.01679 0.94195 0.99125 0.86757 1.23147 0.99126 0.89460 1.04107 0.87179 1.21951 0.96659 0.95832 0.98656 1.23046 0.97815 0.96384 0.98721 1.22366 0.95297 0.93879 1.01796 1.23210 0.95762 1.01815 0.94910 0.86338 0.92768 0.94821 0.94046 0.91191 0.89999 0.87961 0.88513 0.89233 0.89249 0.88965 0.91255 0.91239 0.91580 0.91307 0.91119 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 10 N -0.59 -12.76 2.46 -175.06 -0.43 -13.19 16 11 C 0.14 2.41 5.52 -4.04 -0.02 2.39 16 12 C -0.16 -2.33 6.01 -90.62 -0.54 -2.88 16 13 C -0.18 -2.37 10.18 -26.69 -0.27 -2.64 16 14 C -0.18 -2.07 10.26 -26.69 -0.27 -2.34 16 15 C 0.53 11.54 7.45 -10.98 -0.08 11.46 16 16 O -0.54 -14.13 15.90 5.56 0.09 -14.04 16 17 C -0.15 -2.46 4.83 -91.77 -0.44 -2.90 16 18 H 0.11 1.62 6.44 -51.93 -0.33 1.29 16 19 C -0.14 -1.89 6.64 -89.52 -0.59 -2.48 16 20 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 21 C -0.09 -0.95 6.63 -25.07 -0.17 -1.12 16 22 C -0.12 -1.13 6.96 -23.54 -0.16 -1.29 16 23 C -0.10 -1.05 6.79 -23.86 -0.16 -1.21 16 24 C -0.14 -2.00 6.33 -89.52 -0.57 -2.57 16 25 H 0.12 1.96 7.78 -51.93 -0.40 1.55 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 29 H 0.07 1.01 6.00 -51.93 -0.31 0.70 16 30 H 0.08 1.44 7.81 -51.93 -0.41 1.03 16 31 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.10 1.34 8.03 -51.92 -0.42 0.92 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -32.51 337.34 -10.15 -42.66 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.87 Total: 1.34 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.74 Total: -12.81 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.31 Total: -39.36 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.51 -10.15 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247371479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.743 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds