Wall clock time and date at job start Mon Mar 30 2020 00:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94547 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46980 * 90.00288 * 7 6 5 9 9 C 1.46901 * 110.99638 * 293.95394 * 8 7 6 10 10 C 1.46895 * 110.99842 * 170.00412 * 8 7 6 11 11 C 1.53006 * 109.47013 * 189.99653 * 10 8 7 12 12 C 1.50694 * 109.47176 * 179.97438 * 11 10 8 13 13 H 1.08007 * 119.99903 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99676 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00128 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47390 * 89.99803 * 16 14 12 18 18 H 1.48505 * 109.47380 * 210.00152 * 16 14 12 19 19 H 1.48503 * 109.46849 * 329.99814 * 16 14 12 20 20 C 1.38248 * 120.10951 * 0.02562 * 6 5 4 21 21 C 1.38166 * 120.05883 * 359.76356 * 20 6 5 22 22 C 1.50701 * 120.02891 * 180.25589 * 21 20 6 23 23 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 24 24 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 26 26 H 1.07997 * 120.03063 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 28 28 H 1.08995 * 109.47189 * 209.99792 * 7 6 5 29 29 H 1.08996 * 109.46612 * 330.00034 * 7 6 5 30 30 H 1.08999 * 109.47583 * 59.99930 * 9 8 7 31 31 H 1.09003 * 109.46843 * 180.02562 * 9 8 7 32 32 H 1.09007 * 109.47074 * 299.99999 * 9 8 7 33 33 H 1.09007 * 109.47253 * 309.99353 * 10 8 7 34 34 H 1.08998 * 109.47516 * 69.99854 * 10 8 7 35 35 H 1.08998 * 109.47171 * 299.99897 * 11 10 8 36 36 H 1.08998 * 109.46814 * 59.99772 * 11 10 8 37 37 H 0.96998 * 119.99358 * 179.97438 * 15 14 12 38 38 H 1.08009 * 119.96868 * 180.02562 * 20 6 5 39 39 H 1.08999 * 109.46852 * 270.22884 * 22 21 20 40 40 H 1.08994 * 109.46996 * 30.23768 * 22 21 20 41 41 H 1.08996 * 109.46797 * 150.23660 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.2078 5.4551 1.3845 9 6 2.9322 5.7128 2.0659 10 6 5.0777 6.6380 1.4307 11 6 5.4876 6.9133 2.8789 12 6 6.3805 8.1263 2.9263 13 1 6.6302 8.6490 2.0147 14 6 6.8786 8.5690 4.1333 15 7 7.6574 9.6280 4.1746 16 14 6.4473 7.6646 5.7098 17 1 7.4562 6.6053 5.9647 18 1 6.4387 8.6233 6.8440 19 1 5.1039 7.0465 5.5741 20 6 4.0559 2.5171 0.0000 21 6 3.4311 1.2848 0.0049 22 6 4.2538 0.0222 0.0113 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2128 2.3203 -0.0005 27 1 1.3340 4.5113 -0.0019 28 1 4.9441 4.9382 -0.5139 29 1 3.3582 5.7462 -0.5148 30 1 2.3360 4.8004 2.0782 31 1 3.1254 6.0349 3.0891 32 1 2.3885 6.4949 1.5357 33 1 5.9685 6.4577 0.8289 34 1 4.5403 7.4999 1.0352 35 1 4.5969 7.0936 3.4807 36 1 6.0250 6.0514 3.2744 37 1 8.0075 9.9396 5.0239 38 1 5.1344 2.5753 0.0008 39 1 4.4565 -0.2846 -1.0148 40 1 5.1955 0.2047 0.5289 41 1 3.7042 -0.7669 0.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258865633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:20 Heat of formation + Delta-G solvation = -17.666503 kcal Electronic energy + Delta-G solvation = -19433.836909 eV Core-core repulsion = 16506.823204 eV Total energy + Delta-G solvation = -2927.013705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37890 -38.24701 -36.61333 -33.31812 -32.67844 -31.19918 -29.66765 -27.92679 -26.93384 -26.71362 -25.10370 -22.55522 -21.88997 -20.31684 -19.83455 -18.07700 -16.85826 -16.51684 -15.95444 -15.24320 -15.07854 -14.74744 -14.39176 -14.10846 -13.79268 -13.56888 -13.33619 -13.16717 -12.82356 -12.50929 -12.31008 -12.13415 -12.10594 -11.61600 -11.37367 -11.26098 -11.16380 -11.04395 -10.84278 -10.78612 -10.09884 -9.73542 -9.70695 -9.17664 -8.80888 -8.50594 -8.11400 -7.77272 -6.02531 -4.00414 1.31404 1.39042 3.12953 3.34793 3.41456 3.46731 3.65588 4.48380 4.58607 4.66935 4.72559 4.85182 4.89755 4.94881 5.18455 5.27132 5.30079 5.32139 5.42925 5.55081 5.62233 5.63369 5.71247 5.82352 5.86708 5.92168 6.16593 6.17541 6.27964 6.34396 6.35463 6.40432 6.69385 6.75915 6.79690 7.17757 7.28524 7.34209 7.61450 7.65184 7.87680 8.55157 9.01674 9.60252 11.10882 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.003638 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.690423 B = 7695.680849 C = 7764.316611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.117 3.883 4 C -0.206 4.206 5 C -0.081 4.081 6 C -0.098 4.098 7 C 0.094 3.906 8 N -0.540 5.540 9 C 0.022 3.978 10 C 0.070 3.930 11 C -0.007 4.007 12 C -0.521 4.521 13 H 0.070 0.930 14 C 0.067 3.933 15 N -0.905 5.905 16 Si 0.882 3.118 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.103 4.103 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.019 0.981 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.016 0.984 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.376 -18.574 -9.895 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.072 3.928 4 C -0.224 4.224 5 C -0.099 4.099 6 C -0.099 4.099 7 C -0.033 4.033 8 N -0.264 5.264 9 C -0.126 4.126 10 C -0.056 4.056 11 C -0.045 4.045 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.160 4.160 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.947 -19.016 -9.525 25.433 hybrid contribution -0.916 0.558 0.512 1.189 sum -14.863 -18.458 -9.013 25.354 Atomic orbital electron populations 1.23013 0.78798 1.03619 1.01265 1.86038 1.20972 1.27089 1.88990 1.18797 0.91810 0.83995 0.98189 1.21119 0.99630 0.92303 1.09378 1.20828 0.94126 0.96829 0.98139 1.19748 0.93154 0.95302 1.01712 1.21005 0.99541 0.91962 0.90835 1.62116 1.14502 1.36273 1.13481 1.22448 0.90765 0.99340 1.00059 1.22159 0.94756 0.88095 1.00618 1.19575 0.96443 0.96900 0.91587 1.21094 1.28842 1.10874 0.95110 0.91137 1.24997 0.94545 0.94773 0.99094 1.69922 1.33877 1.24402 1.26185 0.86745 0.79688 0.79657 0.83000 1.20209 1.21520 1.19003 1.20802 1.00024 0.90220 0.97002 1.19245 0.90501 0.96181 1.05951 1.20586 0.98919 0.94472 1.02012 0.92843 0.88488 0.92765 0.85806 0.86166 0.90111 0.94515 0.92103 0.90805 0.96258 0.91471 0.95549 0.96592 0.96143 0.92755 0.85133 0.91648 0.91523 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.49 9.54 -19.41 -0.19 -3.68 16 3 C 0.12 1.43 6.66 -39.22 -0.26 1.17 16 4 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 5 C -0.08 -0.99 7.96 -39.61 -0.32 -1.30 16 6 C -0.10 -1.33 4.88 -104.60 -0.51 -1.84 16 7 C 0.09 1.37 5.12 -4.97 -0.03 1.34 16 8 N -0.54 -9.50 4.75 -244.36 -1.16 -10.66 16 9 C 0.02 0.36 8.94 60.07 0.54 0.90 16 10 C 0.07 1.44 4.90 -3.82 -0.02 1.42 16 11 C -0.01 -0.18 3.97 -27.88 -0.11 -0.29 16 12 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 13 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 16 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 20 C -0.06 -0.81 9.35 -39.60 -0.37 -1.18 16 21 C -0.12 -1.47 5.89 -104.47 -0.62 -2.09 16 22 C -0.10 -1.07 9.79 36.01 0.35 -0.71 16 23 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 26 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 27 H 0.12 1.32 8.03 -52.49 -0.42 0.90 16 28 H 0.08 1.12 7.87 -51.93 -0.41 0.71 16 29 H 0.04 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.06 0.90 6.16 -51.93 -0.32 0.58 16 31 H 0.07 1.32 6.30 -51.93 -0.33 0.99 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 34 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.02 0.39 5.53 -51.93 -0.29 0.10 16 36 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -32.02 329.52 -8.03 -40.05 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.62 Total: -3.22 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.13 Total: -17.57 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.39 Total: -38.08 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.19 Total: -3.68 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.02 -8.03 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258865633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.387 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds