Wall clock time and date at job start Mon Mar 30 2020 00:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 117.00359 * 2 1 4 4 C 1.38752 * 120.05527 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94585 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05306 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94297 * 179.69911 * 6 5 4 8 8 N 1.46898 * 109.46893 * 105.41481 * 7 6 5 9 9 C 1.46898 * 111.00482 * 288.13883 * 8 7 6 10 10 C 1.46900 * 111.00236 * 164.17924 * 8 7 6 11 11 C 1.50694 * 109.47200 * 190.00273 * 10 8 7 12 12 H 1.07998 * 120.00459 * 359.97438 * 11 10 8 13 13 C 1.37883 * 119.99729 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99804 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99827 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47430 * 60.00152 * 15 13 11 17 17 H 1.48508 * 109.47003 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47078 * 299.99497 * 15 13 11 19 19 C 1.38240 * 120.11075 * 359.97438 * 6 5 4 20 20 C 1.50704 * 119.97046 * 179.97438 * 19 6 5 21 21 C 1.38163 * 120.06018 * 359.97438 * 19 6 5 22 22 C 1.50702 * 120.03052 * 180.02562 * 21 19 6 23 23 H 1.08996 * 109.47790 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47569 * 300.00849 * 1 2 3 25 25 H 1.09010 * 109.46705 * 60.00082 * 1 2 3 26 26 H 1.08009 * 120.02480 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.97511 * 180.02562 * 5 4 3 28 28 H 1.08993 * 109.47098 * 225.42007 * 7 6 5 29 29 H 1.09001 * 109.46808 * 345.42046 * 7 6 5 30 30 H 1.09002 * 109.47429 * 56.73681 * 9 8 7 31 31 H 1.08998 * 109.47325 * 176.74160 * 9 8 7 32 32 H 1.09008 * 109.46729 * 296.74190 * 9 8 7 33 33 H 1.09003 * 109.46928 * 310.00338 * 10 8 7 34 34 H 1.08995 * 109.46904 * 69.99837 * 10 8 7 35 35 H 0.97005 * 119.99626 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.47427 * 92.66285 * 20 19 6 37 37 H 1.08999 * 109.47339 * 212.66419 * 20 19 6 38 38 H 1.09008 * 109.46970 * 332.66011 * 20 19 6 39 39 H 1.08997 * 109.46756 * 269.99675 * 22 21 19 40 40 H 1.08995 * 109.46880 * 30.00024 * 22 21 19 41 41 H 1.09005 * 109.46824 * 149.99821 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 3.9864 5.0184 -0.0090 8 7 4.5368 5.2948 1.3246 9 6 3.4657 5.5911 2.2852 10 6 5.5159 6.3888 1.2737 11 6 6.2347 6.4815 2.5949 12 1 5.9886 5.7965 3.3928 13 6 7.2059 7.4415 2.7854 14 7 7.5052 8.2759 1.8139 15 14 8.0975 7.5560 4.4229 16 1 8.8000 6.2762 4.6946 17 1 9.0871 8.6620 4.3714 18 1 7.1147 7.8205 5.5041 19 6 4.0561 2.5169 -0.0011 20 6 5.5609 2.5979 -0.0022 21 6 3.4312 1.2846 0.0005 22 6 4.2537 0.0219 0.0017 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 0.2129 2.3203 -0.0005 27 1 1.3342 4.5113 -0.0011 28 1 4.7939 5.0106 -0.7410 29 1 3.2651 5.7922 -0.2719 30 1 2.7614 4.7596 2.3121 31 1 3.8961 5.7350 3.2763 32 1 2.9448 6.4987 1.9800 33 1 6.2375 6.1939 0.4803 34 1 5.0008 7.3282 1.0735 35 1 8.1887 8.9510 1.9478 36 1 5.9271 2.5707 1.0240 37 1 5.9698 1.7530 -0.5564 38 1 5.8743 3.5286 -0.4754 39 1 4.4516 -0.2837 -1.0257 40 1 5.1979 0.2039 0.5150 41 1 3.7065 -0.7677 0.5167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258879705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:19 Heat of formation + Delta-G solvation = -18.341556 kcal Electronic energy + Delta-G solvation = -20015.702129 eV Core-core repulsion = 17088.659152 eV Total energy + Delta-G solvation = -2927.042978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25481 -38.09555 -36.05720 -33.23458 -32.59582 -31.34326 -28.23316 -27.58296 -26.89698 -26.01336 -25.78845 -23.53775 -20.90772 -20.65504 -19.73960 -17.50110 -16.53310 -16.34184 -15.78945 -14.99845 -14.70991 -14.39964 -14.15259 -13.80204 -13.57482 -13.52728 -12.89408 -12.80550 -12.39855 -12.21385 -11.96031 -11.88934 -11.86297 -11.58696 -11.31858 -11.07080 -10.97568 -10.83134 -10.60964 -10.55968 -10.45013 -10.37682 -9.79125 -9.20824 -8.41733 -8.32150 -7.79996 -7.18742 -6.00838 -4.01873 1.55952 1.66410 3.31197 3.34879 3.38736 3.41937 3.91396 4.45179 4.86241 4.95620 5.03689 5.04811 5.13408 5.27449 5.32562 5.35864 5.44661 5.52940 5.63840 5.76064 5.81414 5.91736 6.05163 6.08538 6.10082 6.20253 6.35669 6.35934 6.43088 6.53439 6.56973 6.73584 6.80156 7.03367 7.06304 7.31353 7.37313 7.52163 7.82508 8.10800 8.23821 8.57908 9.05843 9.62227 11.09972 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031832 B = 0.004312 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.403808 B = 6492.349300 C = 6750.675002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.096 4.096 7 C 0.093 3.907 8 N -0.531 5.531 9 C 0.040 3.960 10 C 0.193 3.807 11 C -0.505 4.505 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.020 4.020 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.102 4.102 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.009 0.991 33 H 0.030 0.970 34 H -0.010 1.010 35 H 0.261 0.739 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.940 -14.037 -5.217 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.100 4.100 6 C -0.097 4.097 7 C -0.035 4.035 8 N -0.256 5.256 9 C -0.109 4.109 10 C 0.068 3.932 11 C -0.544 4.544 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.021 4.021 20 C -0.166 4.166 21 C -0.124 4.124 22 C -0.158 4.158 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.028 0.972 33 H 0.048 0.952 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.472 -14.480 -5.098 19.165 hybrid contribution -0.375 1.175 0.619 1.380 sum -11.847 -13.305 -4.480 18.369 Atomic orbital electron populations 1.22973 0.79079 1.03355 1.01170 1.86022 1.20737 1.27274 1.89181 1.18727 0.91717 0.83827 0.98550 1.21028 0.99325 0.92349 1.10595 1.20790 0.94076 0.96670 0.98437 1.19752 0.92765 0.95377 1.01761 1.20974 0.97420 0.91509 0.93586 1.62103 1.14063 1.45028 1.04361 1.22191 0.93427 0.97156 0.98105 1.19750 0.89381 0.86057 0.98024 1.21122 1.19349 1.15282 0.98649 0.91934 1.24979 0.97051 0.95649 0.96900 1.69950 1.32467 1.19405 1.32126 0.86575 0.79408 0.77574 0.83931 1.20155 1.21402 1.20337 1.19466 0.96477 0.90644 0.95488 1.20805 0.90235 1.02221 1.03336 1.19047 0.90311 0.95687 1.07350 1.20580 0.99122 0.94380 1.01759 0.88688 0.92907 0.92960 0.86132 0.86379 0.90422 0.95346 0.93684 0.90984 0.97219 0.95232 0.99263 0.92913 0.89902 0.92479 0.90705 0.91891 0.91353 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.06 9.54 -19.43 -0.19 -4.24 16 3 C 0.12 1.67 6.66 -39.22 -0.26 1.41 16 4 C -0.21 -2.91 9.04 -39.44 -0.36 -3.26 16 5 C -0.08 -1.20 9.12 -39.61 -0.36 -1.56 16 6 C -0.10 -1.59 4.66 -104.60 -0.49 -2.07 16 7 C 0.09 1.71 4.37 -4.97 -0.02 1.69 16 8 N -0.53 -11.44 4.56 -245.83 -1.12 -12.57 16 9 C 0.04 0.80 9.19 60.06 0.55 1.36 16 10 C 0.19 4.99 4.71 -4.98 -0.02 4.96 16 11 C -0.51 -14.14 8.51 -34.44 -0.29 -14.43 16 12 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 15 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.02 -0.32 5.88 -104.65 -0.62 -0.94 16 20 C -0.11 -1.70 8.64 36.01 0.31 -1.39 16 21 C -0.12 -1.84 5.89 -104.47 -0.62 -2.46 16 22 C -0.10 -1.27 8.98 36.01 0.32 -0.95 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.05 0.40 7.66 -51.92 -0.40 0.00 16 26 H 0.12 1.32 6.30 -52.48 -0.33 0.99 16 27 H 0.12 1.58 8.00 -52.49 -0.42 1.16 16 28 H 0.08 1.42 6.35 -51.93 -0.33 1.09 16 29 H 0.03 0.51 7.86 -51.93 -0.41 0.10 16 30 H 0.04 0.82 6.96 -51.93 -0.36 0.46 16 31 H 0.07 1.54 6.84 -51.93 -0.36 1.19 16 32 H 0.01 0.19 8.14 -51.92 -0.42 -0.24 16 33 H 0.03 0.81 7.86 -51.93 -0.41 0.40 16 34 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.06 0.74 6.85 -51.93 -0.36 0.39 16 38 H 0.07 1.24 6.14 -51.92 -0.32 0.92 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.81 6.75 -51.93 -0.35 0.46 16 41 H 0.06 0.78 7.53 -51.93 -0.39 0.39 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -30.49 328.03 -8.05 -38.54 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.45 Total: -2.44 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.95 Total: -14.93 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.39 Total: -38.52 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.19 Total: -4.24 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.49 -8.05 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258879705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.201 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds