Wall clock time and date at job start Mon Mar 30 2020 00:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34510 * 125.78679 * 2 1 4 4 C 1.41386 * 106.84227 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.58263 * 179.73385 * 4 3 2 6 6 N 1.46898 * 109.47160 * 96.54835 * 5 4 3 7 7 C 1.46849 * 111.00005 * 65.89694 * 6 5 4 8 8 C 1.53032 * 109.52460 * 174.15857 * 7 6 5 9 9 C 1.53122 * 109.27679 * 59.18176 * 8 7 6 10 10 C 1.53117 * 109.16028 * 302.34365 * 9 8 7 11 11 H 1.08996 * 109.50626 * 297.71488 * 10 9 8 12 12 C 1.50706 * 109.50087 * 177.63328 * 10 9 8 13 13 H 1.07992 * 119.99840 * 240.00126 * 12 10 9 14 14 C 1.37879 * 119.99699 * 60.00599 * 12 10 9 15 15 N 1.31517 * 120.00240 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99765 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47059 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47597 * 119.99619 * 16 14 12 19 19 H 1.48500 * 109.46847 * 239.99702 * 16 14 12 20 20 C 1.46850 * 111.00268 * 301.69211 * 6 5 4 21 21 C 1.34518 * 106.83966 * 359.97438 * 4 3 2 22 22 C 1.50693 * 125.79056 * 179.97438 * 21 4 3 23 23 O 1.34302 * 125.79196 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47122 * 90.00620 * 1 2 3 25 25 H 1.09007 * 109.47094 * 210.00564 * 1 2 3 26 26 H 1.09001 * 109.47603 * 330.00379 * 1 2 3 27 27 H 1.07999 * 126.58419 * 0.04980 * 3 2 1 28 28 H 1.08994 * 109.47065 * 216.55138 * 5 4 3 29 29 H 1.08998 * 109.46706 * 336.55101 * 5 4 3 30 30 H 1.08993 * 109.46604 * 294.17795 * 7 6 5 31 31 H 1.09003 * 109.45800 * 54.14293 * 7 6 5 32 32 H 1.09001 * 109.50596 * 179.12106 * 8 7 6 33 33 H 1.09006 * 109.50431 * 299.24201 * 8 7 6 34 34 H 1.08995 * 109.52274 * 62.25051 * 9 8 7 35 35 H 1.09004 * 109.52219 * 182.37305 * 9 8 7 36 36 H 0.96997 * 119.99789 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.45692 * 305.85338 * 20 6 5 38 38 H 1.08997 * 109.46513 * 65.81732 * 20 6 5 39 39 H 1.08999 * 109.47249 * 95.35682 * 22 21 4 40 40 H 1.08996 * 109.47027 * 215.36034 * 22 21 4 41 41 H 1.08996 * 109.47221 * 335.36075 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2935 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8732 1.4851 -0.0065 6 7 5.3688 1.6377 1.3679 7 6 5.8271 0.3514 1.9080 8 6 6.4683 0.5719 3.2799 9 6 5.4408 1.2053 4.2222 10 6 4.9439 2.5195 3.6135 11 1 5.7781 3.2142 3.5168 12 6 3.8894 3.1206 4.5067 13 1 2.8931 3.2914 4.1267 14 6 4.1968 3.4526 5.8092 15 7 5.4100 3.2443 6.2721 16 14 2.8896 4.1971 6.9166 17 1 1.6173 4.3278 6.1619 18 1 2.6789 3.3174 8.0944 19 1 3.3335 5.5384 7.3738 20 6 4.3469 2.2424 2.2319 21 6 3.5814 -0.7121 -0.0004 22 6 4.7706 -1.6377 -0.0014 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5140 26 1 -0.3634 0.8900 0.5138 27 1 1.9665 2.1204 0.0008 28 1 5.6388 1.0077 -0.6179 29 1 4.6382 2.4663 -0.4190 30 1 4.9774 -0.3238 2.0086 31 1 6.5603 -0.0864 1.2306 32 1 6.7943 -0.3851 3.6874 33 1 7.3266 1.2361 3.1780 34 1 4.6001 0.5245 4.3550 35 1 5.9057 1.4030 5.1881 36 1 5.6261 3.4775 7.1885 37 1 4.0050 3.1783 1.7897 38 1 3.5040 1.5585 2.3309 39 1 4.9994 -1.9365 1.0216 40 1 4.5420 -2.5223 -0.5957 41 1 5.6306 -1.1239 -0.4307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259863168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:52 Heat of formation + Delta-G solvation = 1.619312 kcal Electronic energy + Delta-G solvation = -20811.438563 eV Core-core repulsion = 17885.261153 eV Total energy + Delta-G solvation = -2926.177409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.47312 -38.28449 -34.52379 -32.96711 -32.55150 -31.22454 -29.94476 -29.29418 -26.36505 -24.87548 -24.05863 -22.10081 -21.57632 -20.77473 -19.25160 -18.12430 -16.46578 -16.20425 -16.08527 -14.90575 -14.61820 -14.23695 -14.03567 -13.62542 -13.50569 -13.19146 -12.89902 -12.78146 -12.59863 -12.40271 -12.31005 -12.24850 -11.83303 -11.69626 -11.47565 -10.94796 -10.90369 -10.59730 -10.50623 -10.02801 -9.77303 -9.52847 -9.31483 -8.94426 -8.64037 -8.26266 -8.02937 -7.57652 -5.93274 -3.98808 1.88912 2.78930 3.07431 3.31797 3.39675 3.43503 4.45282 4.74527 4.76602 5.02647 5.12955 5.21895 5.36665 5.41355 5.42552 5.47661 5.54904 5.71552 5.75786 5.80300 5.90204 6.04468 6.07255 6.15547 6.24345 6.38270 6.45438 6.54736 6.60063 6.77128 6.79708 6.84841 7.05589 7.28082 7.37465 7.46093 7.73702 7.80489 7.89426 8.14759 8.23102 8.54464 9.05513 9.65069 11.12801 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.006357 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.021811 B = 4403.309356 C = 5281.455719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.027 4.027 3 C -0.190 4.190 4 C -0.196 4.196 5 C 0.120 3.880 6 N -0.527 5.527 7 C 0.056 3.944 8 C -0.119 4.119 9 C -0.109 4.109 10 C 0.053 3.947 11 H 0.032 0.968 12 C -0.511 4.511 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.071 3.929 21 C -0.015 4.015 22 C -0.073 4.073 23 O -0.180 6.180 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.090 0.910 36 H 0.258 0.742 37 H 0.054 0.946 38 H 0.024 0.976 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 -8.121 -13.000 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 C -0.210 4.210 4 C -0.199 4.199 5 C -0.008 4.008 6 N -0.250 5.250 7 C -0.072 4.072 8 C -0.157 4.157 9 C -0.147 4.147 10 C 0.035 3.965 11 H 0.051 0.949 12 C -0.549 4.549 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.056 4.056 21 C -0.066 4.066 22 C -0.130 4.130 23 O -0.077 6.077 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.162 0.838 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.060 -8.056 -12.838 15.462 hybrid contribution -1.461 0.049 0.759 1.647 sum -4.521 -8.007 -12.079 15.180 Atomic orbital electron populations 1.20238 0.85430 1.03945 1.02931 1.22273 0.93756 0.84231 1.07380 1.21467 0.92284 0.99256 1.07997 1.21094 0.97212 0.93747 1.07882 1.20687 0.90248 0.97647 0.92222 1.62416 1.38074 1.23429 1.01037 1.22266 0.97836 0.90417 0.96643 1.21695 0.99914 0.99451 0.94602 1.21630 0.95966 0.96946 1.00199 1.18678 0.95916 0.93450 0.88493 0.94939 1.21191 0.97017 1.40405 0.96335 0.92913 1.24931 0.95237 0.95733 0.97976 1.69905 1.18756 1.48243 1.15910 0.86601 0.82110 0.78930 0.80733 1.19898 1.21128 1.21036 1.22246 0.91720 0.96690 0.94918 1.22129 0.83090 0.94283 1.07104 1.20452 0.91633 0.97374 1.03501 1.83891 1.16383 1.35093 1.72350 0.90574 0.90895 0.89421 0.83783 0.90922 0.90369 0.95081 0.92597 0.93685 0.92168 0.95391 0.89205 0.93184 0.92728 0.95765 0.89910 0.91202 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.42 36.00 0.38 -0.35 16 2 C -0.03 -0.40 7.32 -35.63 -0.26 -0.66 16 3 C -0.19 -3.01 10.02 -39.70 -0.40 -3.41 16 4 C -0.20 -3.16 3.98 -104.74 -0.42 -3.57 16 5 C 0.12 1.90 5.61 -4.98 -0.03 1.87 16 6 N -0.53 -9.99 4.86 -236.12 -1.15 -11.13 16 7 C 0.06 1.00 3.77 -3.83 -0.01 0.99 16 8 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 9 C -0.11 -2.67 5.02 -26.61 -0.13 -2.80 16 10 C 0.05 1.37 2.26 -91.69 -0.21 1.17 16 11 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.51 -14.34 8.57 -34.44 -0.29 -14.63 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -25.78 11.35 55.43 0.63 -25.15 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.07 1.57 4.11 -3.83 -0.02 1.56 16 21 C -0.02 -0.24 6.44 -35.63 -0.23 -0.47 16 22 C -0.07 -0.86 8.47 36.00 0.30 -0.56 16 23 O -0.18 -2.87 10.65 5.70 0.06 -2.81 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.07 0.99 7.22 -51.93 -0.37 0.62 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.57 5.11 -51.93 -0.27 0.31 16 31 H 0.06 0.84 7.18 -51.93 -0.37 0.47 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 2.43 6.15 -51.93 -0.32 2.12 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 37 H 0.05 1.21 8.12 -51.93 -0.42 0.78 16 38 H 0.02 0.56 6.82 -51.93 -0.35 0.21 16 39 H 0.08 0.99 6.77 -51.93 -0.35 0.64 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.93 6.48 -51.93 -0.34 0.59 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -30.54 316.33 -8.85 -39.39 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.57 Total: 0.09 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.58 Total: -21.74 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.52 Total: -36.28 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.06 Total: -2.81 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.54 -8.85 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.011 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds