Wall clock time and date at job start Mon Mar 30 2020 00:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34512 * 125.78742 * 2 1 4 4 C 1.41386 * 106.84153 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.58157 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.47035 * 260.02224 * 5 4 3 7 7 C 1.46842 * 110.99676 * 66.04843 * 6 5 4 8 8 C 1.53036 * 109.52190 * 185.84074 * 7 6 5 9 9 C 1.53123 * 109.27788 * 300.81892 * 8 7 6 10 10 C 1.53123 * 109.16001 * 57.65365 * 9 8 7 11 11 H 1.08998 * 109.53365 * 62.30832 * 10 9 8 12 12 C 1.50697 * 109.50101 * 182.40587 * 10 9 8 13 13 H 1.07998 * 119.99675 * 119.80966 * 12 10 9 14 14 C 1.37883 * 120.00267 * 299.80295 * 12 10 9 15 15 N 1.31512 * 119.99590 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00229 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47229 * 59.99401 * 16 14 12 18 18 H 1.48498 * 109.47177 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46793 * 299.99753 * 16 14 12 20 20 C 1.46848 * 110.99958 * 190.25905 * 6 5 4 21 21 C 1.34521 * 106.83590 * 0.22694 * 4 3 2 22 22 C 1.50697 * 125.78809 * 179.77408 * 21 4 3 23 23 O 1.34302 * 125.78800 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47387 * 89.99728 * 1 2 3 25 25 H 1.08997 * 109.47389 * 210.00096 * 1 2 3 26 26 H 1.09005 * 109.46931 * 329.99824 * 1 2 3 27 27 H 1.08002 * 126.58202 * 359.94145 * 3 2 1 28 28 H 1.09004 * 109.47123 * 140.02932 * 5 4 3 29 29 H 1.08994 * 109.47434 * 20.02450 * 5 4 3 30 30 H 1.09002 * 109.46766 * 65.82407 * 7 6 5 31 31 H 1.09000 * 109.46420 * 305.85141 * 7 6 5 32 32 H 1.09000 * 109.50632 * 60.76184 * 8 7 6 33 33 H 1.09006 * 109.50216 * 180.87978 * 8 7 6 34 34 H 1.09000 * 109.52561 * 177.56017 * 9 8 7 35 35 H 1.09007 * 109.52268 * 297.75177 * 9 8 7 36 36 H 0.97005 * 119.99751 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.46014 * 294.17985 * 20 6 5 38 38 H 1.08995 * 109.46374 * 54.14015 * 20 6 5 39 39 H 1.09005 * 109.47464 * 89.99486 * 22 21 4 40 40 H 1.08995 * 109.47353 * 209.99920 * 22 21 4 41 41 H 1.09001 * 109.47237 * 330.00026 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0006 5 6 4.8732 1.4851 0.0003 6 7 5.4130 1.5634 -1.3638 7 6 4.4936 2.2850 -2.2528 8 6 5.0164 2.2213 -3.6897 9 6 6.4114 2.8498 -3.7485 10 6 7.3368 2.1109 -2.7778 11 1 7.4296 1.0691 -3.0844 12 6 8.6965 2.7608 -2.7858 13 1 9.1000 3.1797 -1.8758 14 6 9.4253 2.8204 -3.9547 15 7 8.9337 2.3105 -5.0628 16 14 11.1109 3.6252 -3.9644 17 1 12.0061 2.9107 -3.0194 18 1 11.6830 3.5595 -5.3332 19 1 10.9838 5.0451 -3.5481 20 6 6.7468 2.1777 -1.3674 21 6 3.5813 -0.7122 -0.0042 22 6 4.7705 -1.6378 -0.0102 23 8 2.2924 -1.0894 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9665 2.1204 -0.0009 28 1 5.6184 1.0419 0.6609 29 1 4.6262 2.4869 0.3514 30 1 4.4251 3.3260 -1.9371 31 1 3.5064 1.8254 -2.2048 32 1 5.0720 1.1812 -4.0110 33 1 4.3419 2.7702 -4.3470 34 1 6.8056 2.7677 -4.7614 35 1 6.3498 3.9005 -3.4646 36 1 9.4466 2.3520 -5.8851 37 1 6.6678 3.2193 -1.0557 38 1 7.3960 1.6403 -0.6762 39 1 5.0597 -1.8647 1.0160 40 1 4.5094 -2.5614 -0.5268 41 1 5.6027 -1.1569 -0.5242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259863182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:53 Heat of formation + Delta-G solvation = -17.921823 kcal Electronic energy + Delta-G solvation = -20258.605577 eV Core-core repulsion = 17331.580800 eV Total energy + Delta-G solvation = -2927.024777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.52201 -39.78708 -36.12000 -34.47123 -33.81619 -32.78514 -31.65440 -30.32740 -27.70873 -26.89291 -25.08250 -23.62839 -23.15656 -22.20569 -20.37718 -19.93946 -18.38351 -17.32105 -17.22523 -16.71905 -16.22549 -15.81459 -15.28316 -14.94078 -14.81772 -14.42718 -14.28524 -14.07903 -13.97708 -13.62419 -13.40353 -13.35898 -13.32738 -12.94919 -12.88716 -12.80732 -12.55975 -12.48417 -12.06546 -11.85909 -11.71030 -11.38278 -10.90081 -10.68518 -10.51087 -10.35720 -9.15125 -8.99725 -8.06032 -6.20284 0.82357 1.43078 1.44311 1.51846 1.61770 2.07887 2.44714 3.20903 3.23477 3.84075 3.90448 4.04037 4.21278 4.25113 4.38954 4.46896 4.49937 4.58363 4.62339 4.67093 4.73350 4.74839 4.75152 4.86115 4.89178 4.96305 5.01514 5.07867 5.10128 5.18623 5.25444 5.38742 5.46756 5.53005 5.64679 5.68634 5.98082 6.13342 6.22600 6.28316 6.37200 6.47952 6.92303 7.47534 8.98464 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037430 B = 0.004359 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.877817 B = 6421.801008 C = 6674.467204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.029 4.029 3 C -0.217 4.217 4 C -0.180 4.180 5 C 0.128 3.872 6 N -0.539 5.539 7 C 0.074 3.926 8 C -0.109 4.109 9 C -0.102 4.102 10 C 0.054 3.946 11 H -0.002 1.002 12 C -0.537 4.537 13 H 0.053 0.947 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.081 3.919 21 C -0.010 4.010 22 C -0.071 4.071 23 O -0.191 6.191 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.155 0.845 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.260 0.740 37 H 0.015 0.985 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 -4.067 10.510 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C -0.236 4.236 4 C -0.182 4.182 5 C 0.001 3.999 6 N -0.264 5.264 7 C -0.054 4.054 8 C -0.147 4.147 9 C -0.140 4.140 10 C 0.035 3.965 11 H 0.016 0.984 12 C -0.575 4.575 13 H 0.071 0.929 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.780 3.220 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.046 4.046 21 C -0.060 4.060 22 C -0.127 4.127 23 O -0.089 6.089 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.172 0.828 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.976 -4.856 10.155 18.734 hybrid contribution 1.125 1.474 -0.127 1.859 sum -13.851 -3.381 10.028 17.431 Atomic orbital electron populations 1.20431 0.82450 1.05138 1.04393 1.23025 0.95416 0.83538 1.05823 1.21645 0.92018 1.00090 1.09856 1.20106 0.95274 0.93474 1.09329 1.20321 0.92840 0.96813 0.89940 1.61940 1.02555 1.53433 1.08424 1.21909 0.95627 0.95128 0.92706 1.21576 0.97010 1.00220 0.95901 1.21457 0.93817 0.96692 1.02084 1.18567 0.92661 0.94612 0.90611 0.98403 1.21499 1.02762 1.38069 0.95181 0.92910 1.25718 1.01446 0.95967 0.95304 1.70037 1.38865 1.46421 1.00186 0.85677 0.80164 0.79115 0.77070 1.19565 1.21039 1.19739 1.22008 0.88526 0.95159 0.98911 1.22577 0.83345 0.94799 1.05267 1.20354 0.90880 0.97382 1.04063 1.83935 1.16697 1.35852 1.72404 0.89300 0.89781 0.87694 0.82777 0.89832 0.94305 0.95842 0.90698 0.93467 0.91587 0.92395 0.95923 0.93109 0.96683 0.91959 0.88738 0.90109 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.42 71.24 0.74 -0.21 16 2 C -0.03 -0.69 7.32 24.83 0.18 -0.50 16 3 C -0.22 -5.62 9.99 22.19 0.22 -5.40 16 4 C -0.18 -5.29 4.73 -19.94 -0.09 -5.38 16 5 C 0.13 3.97 4.98 85.55 0.43 4.39 16 6 N -0.54 -20.05 4.65 -900.95 -4.19 -24.23 16 7 C 0.07 2.68 5.31 86.33 0.46 3.14 16 8 C -0.11 -4.44 6.09 30.65 0.19 -4.25 16 9 C -0.10 -5.04 5.03 30.68 0.15 -4.88 16 10 C 0.05 2.80 2.26 -11.49 -0.03 2.78 16 11 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 12 C -0.54 -29.97 8.56 25.60 0.22 -29.75 16 13 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 14 C 0.01 0.81 5.30 84.66 0.45 1.26 16 15 N -0.92 -53.73 11.36 21.45 0.24 -53.49 16 16 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.08 3.48 4.68 86.32 0.40 3.88 16 21 C -0.01 -0.27 7.32 24.83 0.18 -0.09 16 22 C -0.07 -1.70 10.21 71.23 0.73 -0.97 16 23 O -0.19 -5.35 10.65 -2.48 -0.03 -5.38 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.08 2.44 7.98 -2.39 -0.02 2.42 16 29 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 2.52 6.50 -2.39 -0.02 2.50 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.06 3.22 6.16 -2.39 -0.01 3.20 16 35 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 37 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 2.58 8.01 -2.39 -0.02 2.57 16 39 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.36 7.87 -2.39 -0.02 2.34 16 Total: -1.00 -63.84 328.03 3.27 -60.56 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.98 Total: 12.59 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 4.23 Total: -35.99 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -3.94 Total: -77.72 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.03 Total: -5.38 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.84 3.27 -60.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.640 kcal (2) G-P(sol) polarization free energy of solvation -63.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds