Wall clock time and date at job start Mon Mar 30 2020 00:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41384 * 126.57946 * 2 1 4 4 C 1.34518 * 106.83852 * 180.23993 * 3 2 1 5 5 O 1.34295 * 108.42175 * 359.77186 * 4 3 2 6 6 C 1.34306 * 109.47714 * 0.02562 * 5 4 3 7 7 C 1.50703 * 125.78945 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47107 * 270.02180 * 7 6 5 9 9 C 1.46843 * 111.00049 * 294.21372 * 8 7 6 10 10 C 1.53043 * 109.52446 * 174.16274 * 9 8 7 11 11 C 1.53115 * 109.28035 * 59.17281 * 10 9 8 12 12 C 1.53000 * 109.52526 * 182.44087 * 11 10 9 13 13 C 1.50692 * 109.47272 * 294.68990 * 12 11 10 14 14 H 1.07999 * 120.00281 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00007 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00054 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99880 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47046 * 89.99627 * 17 15 13 19 19 H 1.48496 * 109.47059 * 209.99757 * 17 15 13 20 20 H 1.48497 * 109.47235 * 329.99801 * 17 15 13 21 21 C 1.53119 * 109.16391 * 302.35079 * 11 10 9 22 22 C 1.46842 * 111.00041 * 169.99728 * 8 7 6 23 23 H 1.09000 * 109.47160 * 270.15760 * 1 2 3 24 24 H 1.09003 * 109.46979 * 30.15801 * 1 2 3 25 25 H 1.08997 * 109.47313 * 150.15905 * 1 2 3 26 26 H 1.08004 * 126.58094 * 359.97438 * 3 2 1 27 27 H 1.08002 * 125.78628 * 179.79300 * 4 3 2 28 28 H 1.09002 * 109.47152 * 150.02267 * 7 6 5 29 29 H 1.09001 * 109.46980 * 30.02368 * 7 6 5 30 30 H 1.09004 * 109.46019 * 294.17499 * 9 8 7 31 31 H 1.08999 * 109.46883 * 54.14319 * 9 8 7 32 32 H 1.09007 * 109.49669 * 299.23395 * 10 9 8 33 33 H 1.09001 * 109.53519 * 179.13897 * 10 9 8 34 34 H 1.09007 * 109.57302 * 62.28363 * 11 10 9 35 35 H 1.09008 * 109.46746 * 54.68639 * 12 11 10 36 36 H 1.09002 * 109.47114 * 174.68297 * 12 11 10 37 37 H 0.96997 * 119.99851 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.50021 * 297.71564 * 21 11 10 39 39 H 1.09003 * 109.53874 * 177.61210 * 21 11 10 40 40 H 1.08998 * 109.46877 * 305.85973 * 22 8 7 41 41 H 1.09002 * 109.46171 * 65.83843 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6156 0.6810 -0.0054 5 8 3.5847 -0.6616 -0.0036 6 6 2.3086 -1.0801 0.0024 7 6 1.8521 -2.5164 0.0056 8 7 1.6982 -2.9844 -1.3783 9 6 0.6113 -2.2683 -2.0582 10 6 0.5748 -2.6752 -3.5331 11 6 0.3572 -4.1873 -3.6351 12 6 0.3805 -4.6093 -5.1056 13 6 -0.7940 -3.9955 -5.8230 14 1 -1.4880 -3.3676 -5.2840 15 6 -0.9827 -4.2355 -7.1675 16 7 -0.1374 -4.9996 -7.8241 17 14 -2.4391 -3.4752 -8.0566 18 1 -2.0495 -2.1499 -8.6016 19 1 -2.8586 -4.3642 -9.1697 20 1 -3.5670 -3.3070 -7.1054 21 6 1.4759 -4.9084 -2.8781 22 6 1.4863 -4.4367 -1.4222 23 1 -0.3633 0.0028 1.0277 24 1 -0.3633 0.8886 -0.5163 25 1 -0.3634 -0.8914 -0.5113 26 1 2.0366 2.1691 -0.0004 27 1 4.5060 1.2923 -0.0100 28 1 0.8960 -2.5926 0.5234 29 1 2.5923 -3.1317 0.5171 30 1 -0.3393 -2.5204 -1.5883 31 1 0.7804 -1.1942 -1.9819 32 1 1.5202 -2.4108 -4.0070 33 1 -0.2415 -2.1553 -4.0345 34 1 -0.6061 -4.4481 -3.1966 35 1 1.3071 -4.2675 -5.5670 36 1 0.3202 -5.6955 -5.1729 37 1 -0.2700 -5.1681 -8.7700 38 1 2.4354 -4.6791 -3.3417 39 1 1.3037 -5.9842 -2.9109 40 1 2.2909 -4.9377 -0.8839 41 1 0.5315 -4.6787 -0.9555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259876522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:55 Heat of formation + Delta-G solvation = -1.259840 kcal Electronic energy + Delta-G solvation = -20147.333105 eV Core-core repulsion = 17221.030846 eV Total energy + Delta-G solvation = -2926.302259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.59261 -38.77350 -35.01292 -33.89925 -32.40407 -30.75605 -30.14674 -28.72079 -27.07409 -24.99688 -23.25395 -22.68117 -21.37644 -20.69428 -19.51409 -18.91271 -16.99881 -16.45995 -16.17436 -15.22259 -14.91507 -14.52893 -14.44178 -14.18665 -13.56427 -13.20573 -13.11747 -12.89647 -12.70074 -12.53383 -12.29247 -11.98174 -11.76093 -11.68706 -11.32859 -11.06329 -10.75983 -10.62623 -10.57464 -10.24819 -9.93003 -9.61243 -9.50018 -9.02088 -8.85772 -8.45235 -8.29792 -8.07002 -5.94903 -3.96249 1.71642 2.54533 3.02177 3.34116 3.40503 3.43234 4.15817 4.49508 4.67188 4.86878 4.92383 5.10711 5.28649 5.35149 5.40371 5.41710 5.48521 5.57313 5.59853 5.72605 5.77252 5.82989 5.87768 5.95551 6.07685 6.15177 6.17867 6.26457 6.44692 6.55201 6.59316 6.68679 6.99468 7.11203 7.17340 7.22624 7.28540 7.37656 7.73351 7.90243 8.06045 8.49153 9.10326 9.67094 11.16509 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025803 B = 0.004432 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.869406 B = 6316.633852 C = 6842.800538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.177 4.177 3 C -0.212 4.212 4 C -0.043 4.043 5 O -0.168 6.168 6 C 0.005 3.995 7 C 0.131 3.869 8 N -0.533 5.533 9 C 0.048 3.952 10 C -0.099 4.099 11 C -0.082 4.082 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.112 4.112 22 C 0.060 3.940 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.145 0.855 27 H 0.200 0.800 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 8.362 17.878 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.179 4.179 3 C -0.231 4.231 4 C -0.111 4.111 5 O -0.063 6.063 6 C -0.046 4.046 7 C 0.004 3.996 8 N -0.258 5.258 9 C -0.079 4.079 10 C -0.137 4.137 11 C -0.100 4.100 12 C -0.009 4.009 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.150 4.150 22 C -0.067 4.067 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.163 0.837 27 H 0.216 0.784 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.139 8.171 17.449 19.941 hybrid contribution -1.534 0.575 -0.226 1.653 sum 3.605 8.746 17.223 19.650 Atomic orbital electron populations 1.20432 0.89462 1.03360 1.01863 1.20210 0.97012 0.92127 1.08584 1.21677 0.92702 0.99672 1.09051 1.23935 0.99607 0.80879 1.06702 1.84022 1.28910 1.22463 1.70951 1.22058 0.80799 0.96047 1.05711 1.20414 0.99972 0.87793 0.91436 1.61909 1.45838 1.05185 1.12904 1.22491 0.90567 0.98413 0.96417 1.21549 1.02405 0.97200 0.92536 1.21245 0.95942 0.93794 0.99059 1.19116 0.97057 0.96332 0.88406 1.21252 1.10218 1.29715 0.94025 0.92734 1.25012 0.96315 0.95364 0.97764 1.69964 1.36580 1.37960 1.09082 0.86661 0.83134 0.79132 0.79477 1.20735 1.21318 1.19963 1.21696 1.00759 0.99352 0.93152 1.22127 0.99190 0.86519 0.98852 0.91860 0.91456 0.90822 0.83749 0.78353 0.91988 0.89363 0.95274 0.90637 0.91922 0.90876 0.93016 0.96523 0.96756 0.93116 0.91535 0.91953 0.91405 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.37 36.00 0.34 -0.68 16 2 C -0.18 -2.23 5.19 -104.75 -0.54 -2.77 16 3 C -0.21 -2.42 10.87 -39.70 -0.43 -2.85 16 4 C -0.04 -0.48 12.09 29.42 0.36 -0.12 16 5 O -0.17 -2.31 10.65 5.72 0.06 -2.24 16 6 C 0.00 0.06 6.23 -35.62 -0.22 -0.16 16 7 C 0.13 1.64 5.19 -4.98 -0.03 1.62 16 8 N -0.53 -7.98 4.65 -236.11 -1.10 -9.08 16 9 C 0.05 0.76 3.91 -3.83 -0.01 0.75 16 10 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 11 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 12 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 13 C -0.51 -14.40 8.44 -34.44 -0.29 -14.69 16 14 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 22 C 0.06 0.87 5.46 -3.84 -0.02 0.85 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.84 4.73 -51.93 -0.25 0.59 16 26 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 27 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.06 0.69 7.76 -51.93 -0.40 0.29 16 29 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 30 H 0.03 0.44 7.39 -51.93 -0.38 0.06 16 31 H 0.08 1.17 5.08 -51.93 -0.26 0.91 16 32 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 33 H 0.07 1.49 7.05 -51.93 -0.37 1.12 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -31.18 321.63 -8.68 -39.86 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.65 Total: -1.76 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -1.56 Total: -21.96 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.36 Total: -35.48 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.06 Total: -2.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.18 -8.68 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.602 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds