Wall clock time and date at job start Sun Mar 29 2020 23:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00141 * 2 1 4 4 H 1.48495 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46980 * 299.99764 * 3 2 1 6 6 H 1.48506 * 109.47142 * 59.99416 * 3 2 1 7 7 C 1.37879 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46843 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46937 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47473 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00163 * 179.97438 * 12 11 10 14 14 O 1.21607 * 120.00206 * 359.97438 * 13 12 11 15 15 C 1.47106 * 119.99871 * 180.02562 * 13 12 11 16 16 C 1.32987 * 119.99845 * 177.44615 * 15 13 12 17 17 C 1.50707 * 119.99949 * 186.63921 * 16 15 13 18 18 C 1.53004 * 117.49721 * 246.00711 * 17 16 15 19 19 C 1.52995 * 117.49988 * 177.38504 * 17 16 15 20 20 C 1.50703 * 120.00396 * 6.64498 * 16 15 13 21 21 C 1.52997 * 117.49845 * 132.38873 * 20 16 15 22 22 C 1.52995 * 60.00184 * 252.51334 * 21 20 16 23 23 H 0.97004 * 120.00395 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47321 * 59.99704 * 9 7 2 25 25 H 1.09000 * 109.46926 * 299.99520 * 9 7 2 26 26 H 1.08997 * 109.47176 * 59.99894 * 10 9 7 27 27 H 1.09000 * 109.47196 * 299.99635 * 10 9 7 28 28 H 1.09008 * 109.47440 * 59.99820 * 11 10 9 29 29 H 1.09000 * 109.47080 * 299.99951 * 11 10 9 30 30 H 0.97006 * 119.99360 * 0.02562 * 12 11 10 31 31 H 1.07998 * 119.99670 * 357.45000 * 15 13 12 32 32 H 1.09003 * 115.55822 * 31.69267 * 17 16 15 33 33 H 1.09001 * 117.49462 * 145.01862 * 18 17 16 34 34 H 1.09003 * 117.50186 * 359.97438 * 18 17 16 35 35 H 1.09000 * 117.49817 * 359.97438 * 19 17 16 36 36 H 1.09000 * 117.51811 * 214.97177 * 19 17 16 37 37 H 1.08997 * 115.54626 * 278.09831 * 20 16 15 38 38 H 1.09001 * 117.50261 * 0.02562 * 21 20 16 39 39 H 1.09002 * 117.49919 * 145.02148 * 21 20 16 40 40 H 1.09007 * 117.50247 * 252.51608 * 22 21 20 41 41 H 1.08998 * 117.49868 * 107.49103 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0006 13 6 1.9829 -7.3713 0.0015 14 8 0.7873 -7.5935 0.0033 15 6 2.9388 -8.4894 0.0014 16 6 2.4964 -9.7425 0.0537 17 6 3.4726 -10.8806 0.2046 18 6 3.6044 -11.8581 -0.9652 19 6 2.8978 -12.2938 0.3200 20 6 1.0188 -10.0244 -0.0381 21 6 0.5676 -11.1212 -1.0047 22 6 0.3081 -9.6513 -1.3407 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.8532 -5.0451 -0.8886 29 1 0.8539 -5.0445 0.8914 30 1 3.3859 -5.9234 0.0002 31 1 3.9999 -8.2927 -0.0410 32 1 4.3730 -10.6552 0.7761 33 1 4.5916 -12.2757 -1.1632 34 1 2.9848 -11.6782 -1.8437 35 1 1.8135 -12.4003 0.2873 36 1 3.4199 -12.9985 0.9673 37 1 0.4599 -9.9105 0.8907 38 1 1.3395 -11.6392 -1.5739 39 1 -0.2883 -11.7293 -0.7118 40 1 -0.7187 -9.2922 -1.2687 41 1 0.9092 -9.2020 -2.1311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264041524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:15 Heat of formation + Delta-G solvation = 18.117482 kcal Electronic energy + Delta-G solvation = -19039.629429 eV Core-core repulsion = 16114.167433 eV Total energy + Delta-G solvation = -2925.461995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04576 -38.54384 -35.91573 -35.16891 -33.25070 -32.41436 -31.04687 -27.02358 -24.76405 -23.09083 -22.67027 -22.38405 -22.32848 -20.67011 -20.10412 -18.57137 -16.83932 -16.47983 -16.04656 -15.39826 -15.09373 -14.94541 -14.52797 -14.42168 -13.97320 -13.70869 -13.04024 -12.85430 -12.26806 -11.97695 -11.79715 -11.78418 -11.49609 -11.32289 -11.23368 -10.91285 -10.76831 -10.70486 -10.57623 -10.41972 -10.21386 -9.83910 -9.55333 -9.16001 -9.13221 -9.03347 -8.56704 -8.36901 -6.01335 -4.04263 1.27154 3.30248 3.37548 3.38414 3.41239 3.53978 3.67043 3.83300 4.38479 4.45026 4.46004 4.58020 4.69021 4.91329 4.96803 5.15465 5.22580 5.30894 5.32292 5.34520 5.55883 5.60555 5.75524 5.78985 5.82282 5.83929 5.96889 6.14538 6.19008 6.21366 6.28430 6.34375 6.57415 6.63627 6.90403 7.04084 7.64906 7.77682 7.86270 7.97860 8.38937 8.55508 9.02770 9.59932 11.10051 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.048758 B = 0.002870 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.127344 B = 9755.327730 C =10157.636973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.119 3.881 12 N -0.725 5.725 13 C 0.536 3.464 14 O -0.534 6.534 15 C -0.209 4.209 16 C 0.017 3.983 17 C -0.128 4.128 18 C -0.172 4.172 19 C -0.174 4.174 20 C -0.102 4.102 21 C -0.205 4.205 22 C -0.128 4.128 23 H 0.260 0.740 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.397 0.603 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 -24.424 -0.900 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.004 4.004 12 N -0.375 5.375 13 C 0.324 3.676 14 O -0.412 6.412 15 C -0.230 4.230 16 C 0.015 3.985 17 C -0.147 4.147 18 C -0.208 4.208 19 C -0.211 4.211 20 C -0.120 4.120 21 C -0.242 4.242 22 C -0.165 4.165 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.230 0.770 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.083 -24.427 -0.901 25.189 hybrid contribution 1.050 1.237 0.080 1.624 sum 7.133 -23.189 -0.821 24.276 Atomic orbital electron populations 1.69977 1.06064 1.26563 1.50718 1.25036 0.94858 0.99320 0.95309 0.86528 0.80052 0.83763 0.77598 1.19759 1.20997 1.21000 1.21251 0.93030 0.90961 1.50717 0.92606 1.19032 0.93867 0.90901 0.97615 1.21882 0.99738 0.93462 1.00801 1.21589 0.91878 0.85147 1.01794 1.46124 1.10605 1.05924 1.74876 1.18470 0.88665 0.83180 0.77287 1.90792 1.16388 1.84540 1.49526 1.22424 0.99553 0.92652 1.08403 1.21019 0.93336 0.92536 0.91641 1.21201 0.99927 0.89543 1.03980 1.23115 1.02480 1.02492 0.92744 1.23204 1.01832 0.95894 1.00129 1.20779 0.91750 1.03045 0.96429 1.23479 1.03397 0.92971 1.04321 1.22687 1.01671 0.94947 0.97209 0.92989 0.96306 0.96300 0.92800 0.92796 0.91924 0.91926 0.76983 0.85670 0.86605 0.88380 0.88192 0.87188 0.88590 0.86573 0.88505 0.88973 0.88625 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.12 2.14 5.67 -4.04 -0.02 2.11 16 12 N -0.72 -10.73 5.55 -61.49 -0.34 -11.07 16 13 C 0.54 8.08 7.62 -12.66 -0.10 7.98 16 14 O -0.53 -9.52 12.38 5.27 0.07 -9.46 16 15 C -0.21 -2.44 9.64 -37.81 -0.36 -2.80 16 16 C 0.02 0.18 5.37 -101.16 -0.54 -0.36 16 17 C -0.13 -1.06 6.01 -91.77 -0.55 -1.61 16 18 C -0.17 -1.20 9.61 -26.73 -0.26 -1.45 16 19 C -0.17 -1.23 9.49 -26.73 -0.25 -1.49 16 20 C -0.10 -1.19 3.56 -91.77 -0.33 -1.52 16 21 C -0.21 -1.94 7.76 -26.74 -0.21 -2.15 16 22 C -0.13 -1.57 7.85 -26.73 -0.21 -1.78 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.40 4.81 8.46 -40.82 -0.35 4.46 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.73 6.07 -51.93 -0.32 0.42 16 35 H 0.11 0.82 5.36 -51.93 -0.28 0.54 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.12 1.49 8.10 -51.93 -0.42 1.07 16 38 H 0.10 0.81 4.70 -51.93 -0.24 0.57 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -31.55 333.97 -9.69 -41.24 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.64 Total: 2.60 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -3.52 Total: -18.65 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.39 Total: -37.37 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.55 -9.69 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264041524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.360 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds