Wall clock time and date at job start Mon Mar 30 2020 00:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99989 * 2 1 4 4 H 1.48505 * 109.47481 * 270.00284 * 3 2 1 5 5 H 1.48497 * 109.46895 * 30.00428 * 3 2 1 6 6 H 1.48507 * 109.47214 * 150.00253 * 3 2 1 7 7 C 1.37876 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00011 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00161 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00009 * 269.99739 * 10 9 7 12 12 C 1.53003 * 109.47360 * 270.00361 * 11 10 9 13 13 C 1.53000 * 117.49719 * 243.62508 * 12 11 10 14 14 C 1.52996 * 117.50099 * 175.00184 * 12 11 10 15 15 C 1.34780 * 119.99831 * 90.00358 * 10 9 7 16 16 O 1.21281 * 119.99820 * 359.97438 * 15 10 9 17 17 C 1.50699 * 119.99725 * 179.97438 * 15 10 9 18 18 C 1.53005 * 109.47038 * 179.97438 * 17 15 10 19 19 H 1.08998 * 110.34442 * 307.29297 * 18 17 15 20 20 C 1.51102 * 110.48059 * 69.64294 * 18 17 15 21 21 C 1.30527 * 111.10270 * 135.29878 * 20 18 17 22 22 C 1.51198 * 111.11340 * 0.02562 * 21 20 18 23 23 C 1.54631 * 110.38706 * 185.00135 * 18 17 15 24 24 H 0.97000 * 120.00255 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46955 * 59.99619 * 9 7 2 26 26 H 1.08996 * 109.46787 * 299.99544 * 9 7 2 27 27 H 1.08992 * 109.47012 * 30.00429 * 11 10 9 28 28 H 1.08998 * 109.46873 * 150.00422 * 11 10 9 29 29 H 1.09002 * 115.54741 * 29.32848 * 12 11 10 30 30 H 1.08991 * 117.50098 * 359.97438 * 13 12 11 31 31 H 1.09010 * 117.49698 * 145.02026 * 13 12 11 32 32 H 1.09001 * 117.50094 * 214.97985 * 14 12 11 33 33 H 1.08998 * 117.49939 * 359.97364 * 14 12 11 34 34 H 1.09002 * 109.47319 * 60.00446 * 17 15 10 35 35 H 1.08998 * 109.47349 * 299.99978 * 17 15 10 36 36 H 1.07997 * 124.44801 * 315.31492 * 20 18 17 37 37 H 1.08003 * 124.44329 * 180.02562 * 21 20 18 38 38 H 1.09000 * 110.42455 * 224.75891 * 22 21 20 39 39 H 1.09008 * 110.40054 * 102.35058 * 22 21 20 40 40 H 1.09002 * 111.03841 * 334.47567 * 23 18 17 41 41 H 1.09002 * 111.03772 * 98.37072 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 4.2445 -3.2655 1.2678 12 6 5.6897 -3.0250 1.7089 13 6 6.6132 -4.2417 1.7971 14 6 6.1109 -3.5682 3.0757 15 6 4.2241 -3.2108 -1.1682 16 8 4.0211 -2.6394 -2.2185 17 6 4.7269 -4.6314 -1.1680 18 6 4.8957 -5.1128 -2.6105 19 1 3.9761 -4.9531 -3.1734 20 6 6.0500 -4.3988 -3.2746 21 6 6.7978 -5.2344 -3.9426 22 6 6.2663 -6.6459 -3.8362 23 6 5.2907 -6.6076 -2.6368 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8744 -0.6800 -0.8912 27 1 3.5640 -2.8813 2.0275 28 1 4.0775 -4.3348 1.1377 29 1 6.1292 -2.0816 1.3850 30 1 6.1911 -5.2135 1.5413 31 1 7.6606 -4.0989 1.5311 32 1 6.8278 -2.9824 3.6511 33 1 5.3583 -4.0966 3.6610 34 1 4.0094 -5.2708 -0.6537 35 1 5.6874 -4.6769 -0.6547 36 1 6.2325 -3.3366 -3.2052 37 1 7.6803 -4.9543 -4.4986 38 1 7.0796 -7.3449 -3.6412 39 1 5.7372 -6.9225 -4.7482 40 1 5.7935 -6.8958 -1.7136 41 1 4.4212 -7.2390 -2.8197 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264109063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:39 Heat of formation + Delta-G solvation = 0.743993 kcal Electronic energy + Delta-G solvation = -20232.003186 eV Core-core repulsion = 17305.787820 eV Total energy + Delta-G solvation = -2926.215366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.67208 -38.18049 -37.11132 -34.46254 -32.50744 -31.31179 -28.87483 -28.43130 -26.44344 -25.01673 -22.35260 -22.12424 -20.73243 -20.36392 -18.78999 -18.11887 -16.88121 -16.62333 -15.76266 -15.66122 -14.94606 -14.85338 -14.61599 -13.98205 -13.76243 -12.97068 -12.59015 -12.44796 -12.26049 -11.97074 -11.73862 -11.71764 -11.48204 -11.46184 -11.40478 -11.16737 -11.02013 -10.83082 -10.62658 -10.50846 -10.29890 -10.10460 -9.86202 -9.50650 -8.88257 -8.74893 -8.57061 -7.68597 -6.06972 -4.05262 2.45660 3.30218 3.36169 3.38058 3.42905 3.73386 3.97344 4.41218 4.66936 4.72484 4.86491 4.95240 4.99231 5.06275 5.25026 5.28758 5.39366 5.44972 5.56113 5.63431 5.64336 5.69073 5.74250 5.81311 5.88023 5.92639 5.96214 6.05808 6.06775 6.13262 6.29146 6.40175 6.43255 6.72015 6.75463 6.98219 7.06569 7.39507 7.63891 8.31385 8.49611 8.95678 9.06005 9.53872 11.06543 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.006138 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.067615 B = 4560.924418 C = 5594.954753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.216 3.784 10 N -0.593 5.593 11 C 0.143 3.857 12 C -0.167 4.167 13 C -0.184 4.184 14 C -0.177 4.177 15 C 0.509 3.491 16 O -0.539 6.539 17 C -0.132 4.132 18 C -0.056 4.056 19 H 0.091 0.909 20 C -0.127 4.127 21 C -0.195 4.195 22 C -0.096 4.096 23 C -0.122 4.122 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.483 -12.422 1.294 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.095 3.905 10 N -0.323 5.323 11 C 0.019 3.981 12 C -0.186 4.186 13 C -0.221 4.221 14 C -0.214 4.214 15 C 0.297 3.703 16 O -0.416 6.416 17 C -0.172 4.172 18 C -0.074 4.074 19 H 0.109 0.891 20 C -0.145 4.145 21 C -0.213 4.213 22 C -0.133 4.133 23 C -0.160 4.160 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.187 -11.978 0.738 18.582 hybrid contribution 0.334 1.050 0.113 1.107 sum 14.521 -10.928 0.851 18.194 Atomic orbital electron populations 1.69895 1.06193 1.26930 1.50695 1.24850 0.94741 0.98913 0.94499 0.86859 0.80185 0.83863 0.78827 1.19959 1.21106 1.19087 1.21337 0.89270 0.94767 1.51133 0.90812 1.19633 0.95579 0.78065 0.97207 1.47882 1.64276 1.15747 1.04440 1.21022 0.92975 0.96892 0.87258 1.22938 0.96998 0.98415 1.00260 1.23045 0.99597 0.97078 1.02340 1.22905 1.03623 1.04160 0.90722 1.20397 0.77954 0.88134 0.83848 1.90659 1.52074 1.67991 1.30890 1.21765 1.02535 0.94883 0.98043 1.20842 0.98783 0.93045 0.94764 0.89094 1.23339 0.94770 0.99423 0.96983 1.23191 1.00338 0.95438 1.02308 1.21315 0.98179 0.95416 0.98359 1.22558 0.99054 0.95932 0.98410 0.92607 0.95366 0.94682 0.89400 0.91118 0.87616 0.88789 0.89198 0.89041 0.88647 0.89504 0.89155 0.85797 0.86379 0.91730 0.91156 0.91102 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 8 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 9 C 0.22 5.30 4.23 -5.19 -0.02 5.27 16 10 N -0.59 -12.08 2.46 -175.06 -0.43 -12.51 16 11 C 0.14 2.25 5.49 -4.04 -0.02 2.22 16 12 C -0.17 -2.21 5.95 -90.62 -0.54 -2.75 16 13 C -0.18 -1.93 9.18 -26.73 -0.25 -2.18 16 14 C -0.18 -1.88 10.25 -26.73 -0.27 -2.16 16 15 C 0.51 10.26 7.47 -10.98 -0.08 10.18 16 16 O -0.54 -13.08 14.50 5.56 0.08 -13.00 16 17 C -0.13 -1.93 3.65 -27.88 -0.10 -2.04 16 18 C -0.06 -0.80 2.51 -90.71 -0.23 -1.02 16 19 H 0.09 1.50 7.90 -51.93 -0.41 1.09 16 20 C -0.13 -1.86 9.27 -35.70 -0.33 -2.19 16 21 C -0.19 -2.38 10.78 -35.65 -0.38 -2.77 16 22 C -0.10 -1.00 6.82 -26.77 -0.18 -1.19 16 23 C -0.12 -1.32 6.70 -25.01 -0.17 -1.49 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 26 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 27 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 28 H 0.07 0.95 6.17 -51.93 -0.32 0.63 16 29 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 31 H 0.09 0.89 8.14 -51.92 -0.42 0.46 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.14 7.40 -51.93 -0.38 0.76 16 35 H 0.09 1.16 6.83 -51.93 -0.35 0.80 16 36 H 0.12 2.03 7.58 -52.49 -0.40 1.63 16 37 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -33.00 332.00 -9.07 -42.06 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.80 Total: 2.06 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.02 Total: -13.60 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.34 Total: -39.63 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.00 -9.07 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264109063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.806 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds