Wall clock time and date at job start Mon Mar 30 2020 00:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99757 * 2 1 4 4 H 1.48498 * 109.46974 * 269.99582 * 3 2 1 5 5 H 1.48498 * 109.47061 * 30.00038 * 3 2 1 6 6 H 1.48503 * 109.46616 * 149.99946 * 3 2 1 7 7 C 1.37880 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99614 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00187 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00107 * 270.00101 * 10 9 7 12 12 C 1.53004 * 109.47415 * 274.71858 * 11 10 9 13 13 C 1.52994 * 117.49821 * 243.62231 * 12 11 10 14 14 C 1.52996 * 60.00163 * 252.50520 * 13 12 11 15 15 C 1.34777 * 119.99902 * 90.00389 * 10 9 7 16 16 O 1.21271 * 120.00103 * 5.15933 * 15 10 9 17 17 C 1.50705 * 119.99766 * 185.16523 * 15 10 9 18 18 H 1.08998 * 109.81365 * 325.74723 * 17 15 10 19 19 C 1.53176 * 109.58719 * 86.48253 * 17 15 10 20 20 C 1.50061 * 110.06296 * 169.34338 * 19 17 15 21 21 C 1.29446 * 124.07689 * 342.42925 * 20 19 17 22 22 C 1.50067 * 124.07159 * 0.73486 * 21 20 19 23 23 C 1.53022 * 110.15036 * 342.86638 * 22 21 20 24 24 H 0.97001 * 120.00374 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46791 * 60.00247 * 9 7 2 26 26 H 1.09005 * 109.47187 * 300.00470 * 9 7 2 27 27 H 1.09003 * 109.47468 * 34.71579 * 11 10 9 28 28 H 1.08998 * 109.47730 * 154.71566 * 11 10 9 29 29 H 1.09004 * 115.54386 * 29.32475 * 12 11 10 30 30 H 1.09001 * 117.50349 * 0.02562 * 13 12 11 31 31 H 1.09008 * 117.49761 * 145.01863 * 13 12 11 32 32 H 1.08998 * 117.50031 * 252.51288 * 14 13 12 33 33 H 1.09006 * 117.49705 * 107.48521 * 14 13 12 34 34 H 1.09007 * 109.53989 * 49.07205 * 19 17 15 35 35 H 1.08996 * 109.26030 * 289.43725 * 19 17 15 36 36 H 1.07999 * 117.96563 * 162.72300 * 20 19 17 37 37 H 1.07994 * 117.96509 * 180.75395 * 21 20 19 38 38 H 1.09002 * 109.35795 * 103.07155 * 22 21 20 39 39 H 1.09002 * 109.35568 * 222.65252 * 22 21 20 40 40 H 1.08997 * 109.64230 * 169.12265 * 23 22 21 41 41 H 1.09004 * 109.63809 * 289.53953 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5751 0.0001 11 6 4.2445 -3.2655 1.2688 12 6 5.6509 -2.9297 1.7693 13 6 6.6549 -4.0789 1.8787 14 6 6.0572 -3.4622 3.1449 15 6 4.2241 -3.2107 -1.1671 16 8 4.1119 -2.6112 -2.2153 17 6 4.6142 -4.6664 -1.1695 18 1 5.2306 -4.8852 -0.2976 19 6 3.3534 -5.5359 -1.1462 20 6 3.7116 -6.9693 -1.4089 21 6 4.8304 -7.3525 -1.9354 22 6 5.9319 -6.4180 -2.3421 23 6 5.3976 -4.9880 -2.4485 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8745 -0.6807 -0.8905 27 1 3.5097 -2.9420 2.0061 28 1 4.1595 -4.3418 1.1192 29 1 6.0339 -1.9526 1.4746 30 1 6.3138 -5.0742 1.5937 31 1 7.6988 -3.8581 1.6558 32 1 6.7078 -2.8357 3.7550 33 1 5.3225 -4.0519 3.6933 34 1 2.6584 -5.1910 -1.9119 35 1 2.8792 -5.4554 -0.1682 36 1 2.9893 -7.7281 -1.1466 37 1 4.9802 -8.4105 -2.0920 38 1 6.7276 -6.4519 -1.5979 39 1 6.3302 -6.7278 -3.3083 40 1 6.2303 -4.2926 -2.5529 41 1 4.7408 -4.9059 -3.3146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264110859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:06 Heat of formation + Delta-G solvation = -5.890252 kcal Electronic energy + Delta-G solvation = -20592.732059 eV Core-core repulsion = 17666.229011 eV Total energy + Delta-G solvation = -2926.503049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88668 -37.66267 -37.01272 -34.48336 -32.50915 -31.14881 -30.68393 -28.36804 -26.30535 -23.87555 -23.00743 -22.32448 -21.50860 -20.65249 -18.43045 -17.78855 -16.86079 -16.80545 -15.88154 -15.30555 -14.84503 -14.68704 -14.11668 -13.91318 -13.52923 -13.41298 -12.84868 -12.71249 -12.50518 -12.28157 -12.23597 -12.06124 -11.55047 -11.46359 -11.43375 -10.93915 -10.70952 -10.63692 -10.48654 -10.34158 -10.21478 -10.10307 -9.85413 -9.51299 -8.95485 -8.83533 -8.57672 -7.69108 -6.07791 -4.06265 2.31849 3.30146 3.35799 3.36157 3.38248 3.72776 3.97555 4.40842 4.69573 4.83625 4.88709 4.95991 5.00445 5.12819 5.24715 5.34357 5.37197 5.39882 5.43088 5.60627 5.60824 5.67217 5.80814 5.81342 5.91169 5.94298 6.04168 6.07831 6.12622 6.14879 6.29004 6.41556 6.48531 6.68271 6.74899 6.97366 6.99325 7.38666 7.63006 8.29798 8.48612 8.94221 9.03085 9.53065 11.05544 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.006598 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.620459 B = 4242.852423 C = 5052.583931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.214 3.786 10 N -0.590 5.590 11 C 0.140 3.860 12 C -0.167 4.167 13 C -0.184 4.184 14 C -0.176 4.176 15 C 0.517 3.483 16 O -0.542 6.542 17 C -0.108 4.108 18 H 0.091 0.909 19 C -0.082 4.082 20 C -0.145 4.145 21 C -0.163 4.163 22 C -0.089 4.089 23 C -0.100 4.100 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.942 -12.890 2.803 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.094 3.906 10 N -0.320 5.320 11 C 0.015 3.985 12 C -0.186 4.186 13 C -0.221 4.221 14 C -0.213 4.213 15 C 0.304 3.696 16 O -0.419 6.419 17 C -0.130 4.130 18 H 0.109 0.891 19 C -0.119 4.119 20 C -0.163 4.163 21 C -0.181 4.181 22 C -0.126 4.126 23 C -0.138 4.138 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.699 -12.420 2.246 17.905 hybrid contribution 0.249 0.856 0.165 0.906 sum 12.949 -11.564 2.411 17.528 Atomic orbital electron populations 1.69892 1.06180 1.26954 1.50618 1.24845 0.94741 0.98915 0.94459 0.86862 0.80205 0.83851 0.78858 1.19934 1.21096 1.19066 1.21335 0.89225 0.94800 1.51278 0.90749 1.19649 0.95542 0.78081 0.97345 1.47849 1.64072 1.15729 1.04378 1.21084 0.93676 0.96710 0.86983 1.22919 0.96840 0.98875 0.99969 1.23036 0.98684 0.97824 1.02514 1.22904 1.03675 1.04045 0.90726 1.20315 0.77207 0.88270 0.83825 1.90643 1.52070 1.67938 1.31250 1.21443 0.98210 0.92911 1.00386 0.89099 1.20405 0.96727 0.91677 1.03088 1.22056 0.97527 0.96937 0.99820 1.22026 0.96005 0.99238 1.00812 1.20466 0.96779 0.94119 1.01260 1.21416 0.99809 0.95329 0.97211 0.92591 0.95295 0.94562 0.89500 0.90744 0.87553 0.88847 0.89181 0.88997 0.88655 0.89833 0.90486 0.87825 0.88196 0.91104 0.91089 0.91491 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 8 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.21 5.28 4.29 -5.20 -0.02 5.26 16 10 N -0.59 -12.14 2.46 -175.06 -0.43 -12.57 16 11 C 0.14 2.23 5.37 -4.04 -0.02 2.21 16 12 C -0.17 -2.28 6.00 -90.62 -0.54 -2.82 16 13 C -0.18 -2.01 9.63 -26.74 -0.26 -2.26 16 14 C -0.18 -1.93 10.25 -26.73 -0.27 -2.20 16 15 C 0.52 10.61 6.76 -10.98 -0.07 10.54 16 16 O -0.54 -13.45 15.81 5.56 0.09 -13.36 16 17 C -0.11 -1.65 1.71 -91.48 -0.16 -1.81 16 18 H 0.09 1.22 5.32 -51.93 -0.28 0.94 16 19 C -0.08 -1.19 5.32 -28.10 -0.15 -1.34 16 20 C -0.15 -1.73 9.80 -35.90 -0.35 -2.08 16 21 C -0.16 -1.77 9.80 -35.90 -0.35 -2.12 16 22 C -0.09 -0.97 6.11 -28.18 -0.17 -1.14 16 23 C -0.10 -1.41 4.72 -26.52 -0.13 -1.53 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 26 H 0.04 0.96 6.79 -51.93 -0.35 0.61 16 27 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 28 H 0.07 1.03 4.99 -51.93 -0.26 0.77 16 29 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.09 0.94 7.40 -51.93 -0.38 0.56 16 31 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.39 8.10 -51.92 -0.42 0.97 16 35 H 0.08 1.09 7.35 -51.93 -0.38 0.71 16 36 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.16 8.09 -51.93 -0.42 0.73 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -32.82 328.37 -8.91 -41.73 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.68 Total: 1.89 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.94 Total: -12.77 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.34 Total: -39.53 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.82 -8.91 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264110859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.842 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds