Wall clock time and date at job start Mon Mar 30 2020 00:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99757 * 2 1 4 4 H 1.48498 * 109.46974 * 269.99582 * 3 2 1 5 5 H 1.48498 * 109.47061 * 30.00038 * 3 2 1 6 6 H 1.48503 * 109.46616 * 149.99946 * 3 2 1 7 7 C 1.37880 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99614 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00187 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00107 * 270.00101 * 10 9 7 12 12 C 1.53004 * 109.47415 * 274.71858 * 11 10 9 13 13 C 1.52994 * 117.49821 * 243.62231 * 12 11 10 14 14 C 1.52996 * 60.00163 * 252.50520 * 13 12 11 15 15 C 1.34777 * 119.99902 * 90.00389 * 10 9 7 16 16 O 1.21271 * 120.00103 * 5.15933 * 15 10 9 17 17 C 1.50705 * 119.99766 * 185.16523 * 15 10 9 18 18 H 1.08998 * 109.81365 * 325.74723 * 17 15 10 19 19 C 1.53176 * 109.58719 * 86.48253 * 17 15 10 20 20 C 1.50061 * 110.06296 * 169.34338 * 19 17 15 21 21 C 1.29446 * 124.07689 * 342.42925 * 20 19 17 22 22 C 1.50067 * 124.07159 * 0.73486 * 21 20 19 23 23 C 1.53022 * 110.15036 * 342.86638 * 22 21 20 24 24 H 0.97001 * 120.00374 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46791 * 60.00247 * 9 7 2 26 26 H 1.09005 * 109.47187 * 300.00470 * 9 7 2 27 27 H 1.09003 * 109.47468 * 34.71579 * 11 10 9 28 28 H 1.08998 * 109.47730 * 154.71566 * 11 10 9 29 29 H 1.09004 * 115.54386 * 29.32475 * 12 11 10 30 30 H 1.09001 * 117.50349 * 0.02562 * 13 12 11 31 31 H 1.09008 * 117.49761 * 145.01863 * 13 12 11 32 32 H 1.08998 * 117.50031 * 252.51288 * 14 13 12 33 33 H 1.09006 * 117.49705 * 107.48521 * 14 13 12 34 34 H 1.09007 * 109.53989 * 49.07205 * 19 17 15 35 35 H 1.08996 * 109.26030 * 289.43725 * 19 17 15 36 36 H 1.07999 * 117.96563 * 162.72300 * 20 19 17 37 37 H 1.07994 * 117.96509 * 180.75395 * 21 20 19 38 38 H 1.09002 * 109.35795 * 103.07155 * 22 21 20 39 39 H 1.09002 * 109.35568 * 222.65252 * 22 21 20 40 40 H 1.08997 * 109.64230 * 169.12265 * 23 22 21 41 41 H 1.09004 * 109.63809 * 289.53953 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5751 0.0001 11 6 4.2445 -3.2655 1.2688 12 6 5.6509 -2.9297 1.7693 13 6 6.6549 -4.0789 1.8787 14 6 6.0572 -3.4622 3.1449 15 6 4.2241 -3.2107 -1.1671 16 8 4.1119 -2.6112 -2.2153 17 6 4.6142 -4.6664 -1.1695 18 1 5.2306 -4.8852 -0.2976 19 6 3.3534 -5.5359 -1.1462 20 6 3.7116 -6.9693 -1.4089 21 6 4.8304 -7.3525 -1.9354 22 6 5.9319 -6.4180 -2.3421 23 6 5.3976 -4.9880 -2.4485 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8745 -0.6807 -0.8905 27 1 3.5097 -2.9420 2.0061 28 1 4.1595 -4.3418 1.1192 29 1 6.0339 -1.9526 1.4746 30 1 6.3138 -5.0742 1.5937 31 1 7.6988 -3.8581 1.6558 32 1 6.7078 -2.8357 3.7550 33 1 5.3225 -4.0519 3.6933 34 1 2.6584 -5.1910 -1.9119 35 1 2.8792 -5.4554 -0.1682 36 1 2.9893 -7.7281 -1.1466 37 1 4.9802 -8.4105 -2.0920 38 1 6.7276 -6.4519 -1.5979 39 1 6.3302 -6.7278 -3.3083 40 1 6.2303 -4.2926 -2.5529 41 1 4.7408 -4.9059 -3.3146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264110859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:05 Heat of formation + Delta-G solvation = -25.157994 kcal Electronic energy + Delta-G solvation = -20593.567571 eV Core-core repulsion = 17666.229011 eV Total energy + Delta-G solvation = -2927.338561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35329 -38.77367 -38.27862 -36.16259 -34.62416 -32.41254 -31.72217 -30.22126 -27.74606 -25.46919 -24.20459 -23.18833 -23.05070 -21.79499 -19.92209 -19.14965 -18.84791 -18.11551 -17.31484 -16.71174 -16.20845 -15.97304 -15.84618 -15.02631 -14.78769 -14.69232 -14.53393 -14.12611 -13.91835 -13.85074 -13.56923 -13.18488 -13.15271 -12.97249 -12.57933 -12.47290 -12.27847 -12.08850 -11.87999 -11.77690 -11.67218 -11.32532 -11.23973 -10.89219 -10.85185 -10.44075 -9.86026 -9.43516 -8.36500 -6.41339 1.29463 1.33419 1.41966 1.43337 1.74778 2.24806 2.28460 2.96137 2.97832 3.52342 3.74990 3.82673 3.89070 4.02958 4.08841 4.23211 4.25998 4.32981 4.41670 4.46467 4.64161 4.68865 4.70427 4.72446 4.81439 4.85508 4.92031 4.95522 5.04032 5.08147 5.09069 5.25613 5.31568 5.33679 5.37316 5.43608 5.61538 5.79213 6.07558 6.21898 6.59507 6.68643 7.19071 7.39698 8.80307 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.006598 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.620459 B = 4242.852423 C = 5052.583931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.241 1.241 7 C -0.536 4.536 8 H 0.031 0.969 9 C 0.225 3.775 10 N -0.595 5.595 11 C 0.139 3.861 12 C -0.194 4.194 13 C -0.165 4.165 14 C -0.161 4.161 15 C 0.506 3.494 16 O -0.596 6.596 17 C -0.095 4.095 18 H 0.119 0.881 19 C -0.080 4.080 20 C -0.162 4.162 21 C -0.147 4.147 22 C -0.086 4.086 23 C -0.100 4.100 24 H 0.269 0.731 25 H 0.045 0.955 26 H 0.016 0.984 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -14.589 4.079 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.049 0.951 9 C 0.102 3.898 10 N -0.325 5.325 11 C 0.016 3.984 12 C -0.213 4.213 13 C -0.202 4.202 14 C -0.198 4.198 15 C 0.295 3.705 16 O -0.477 6.477 17 C -0.116 4.116 18 H 0.137 0.863 19 C -0.117 4.117 20 C -0.180 4.180 21 C -0.165 4.165 22 C -0.122 4.122 23 C -0.138 4.138 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.673 -14.158 3.567 21.421 hybrid contribution -0.723 1.328 -0.254 1.534 sum 14.950 -12.830 3.313 19.977 Atomic orbital electron populations 1.70036 1.08087 1.28325 1.51863 1.25807 0.95658 1.03167 0.93844 0.85755 0.79859 0.78631 0.78971 1.20221 1.19704 1.16456 1.21544 0.91434 0.93318 1.51148 0.95103 1.19276 0.92753 0.80883 0.96841 1.47945 1.63485 1.14593 1.06441 1.21282 0.95176 0.97454 0.84460 1.22659 0.95960 0.99528 1.03197 1.23164 0.98466 0.97090 1.01478 1.23023 1.03467 1.03384 0.89947 1.21364 0.75996 0.90282 0.82851 1.90600 1.54503 1.69537 1.33107 1.21448 0.99069 0.88777 1.02339 0.86346 1.20342 0.95668 0.93786 1.01941 1.21968 0.98988 0.95060 1.02026 1.22307 0.95042 1.00725 0.98414 1.20518 0.97269 0.91232 1.03199 1.21427 0.98979 0.98045 0.95384 0.92216 0.93684 0.96596 0.91033 0.88451 0.89371 0.87356 0.87940 0.87834 0.87595 0.93362 0.90662 0.86106 0.85199 0.88686 0.89181 0.91916 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.38 13.96 21.45 0.30 -60.08 16 2 C 0.01 0.81 5.47 84.66 0.46 1.27 16 3 Si 0.95 45.57 27.47 68.60 1.88 47.45 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.24 -10.58 6.54 99.48 0.65 -9.92 16 7 C -0.54 -32.28 9.94 25.60 0.25 -32.03 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 9 C 0.22 11.41 4.29 85.63 0.37 11.78 16 10 N -0.60 -25.22 2.46 -826.16 -2.03 -27.25 16 11 C 0.14 4.39 5.37 86.38 0.46 4.85 16 12 C -0.19 -4.96 6.00 -10.79 -0.06 -5.03 16 13 C -0.17 -2.98 9.63 30.59 0.29 -2.69 16 14 C -0.16 -3.00 10.25 30.59 0.31 -2.69 16 15 C 0.51 21.53 6.76 87.66 0.59 22.12 16 16 O -0.60 -31.31 15.81 -3.00 -0.05 -31.36 16 17 C -0.10 -2.88 1.71 -11.35 -0.02 -2.90 16 18 H 0.12 2.88 5.32 -2.39 -0.01 2.87 16 19 C -0.08 -2.34 5.32 29.71 0.16 -2.18 16 20 C -0.16 -3.51 9.80 27.03 0.26 -3.25 16 21 C -0.15 -2.64 9.80 27.03 0.27 -2.38 16 22 C -0.09 -1.54 6.11 29.66 0.18 -1.36 16 23 C -0.10 -2.74 4.72 30.73 0.14 -2.60 16 24 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 25 H 0.05 2.13 7.13 -2.38 -0.02 2.11 16 26 H 0.02 0.87 6.79 -2.38 -0.02 0.86 16 27 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 28 H 0.10 2.56 4.99 -2.39 -0.01 2.55 16 29 H 0.09 2.59 8.14 -2.38 -0.02 2.58 16 30 H 0.11 1.66 7.40 -2.39 -0.02 1.64 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 1.77 8.14 -2.38 -0.02 1.76 16 34 H 0.05 1.72 8.10 -2.38 -0.02 1.70 16 35 H 0.07 2.16 7.35 -2.39 -0.02 2.14 16 36 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.54 8.09 -2.38 -0.02 1.52 16 Total: -1.00 -76.47 328.37 4.72 -71.74 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.94 Total: 16.56 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 3.68 Total: -17.07 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -1.73 Total: -87.33 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.05 Total: -31.36 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -76.47 4.72 -71.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264110859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.586 kcal (2) G-P(sol) polarization free energy of solvation -76.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds