Wall clock time and date at job start Mon Mar 30 2020 00:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52954 * 109.35959 * 2 1 4 4 C 1.53225 * 109.40454 * 183.66801 * 3 2 1 5 5 C 1.51262 * 108.54108 * 305.37141 * 4 3 2 6 6 C 1.33118 * 120.85330 * 231.33133 * 5 4 3 7 7 C 1.46949 * 120.00063 * 343.81387 * 6 5 4 8 8 O 1.21668 * 119.99967 * 354.14843 * 7 6 5 9 9 N 1.34773 * 120.00465 * 174.14037 * 7 6 5 10 10 C 1.36821 * 120.00239 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99921 * 225.39485 * 10 9 7 12 12 C 1.39070 * 119.99882 * 45.39738 * 10 9 7 13 13 N 1.31347 * 119.99900 * 7.92769 * 12 10 9 14 14 Si 1.86799 * 119.99905 * 187.93197 * 12 10 9 15 15 H 1.48506 * 109.47139 * 60.00029 * 14 12 10 16 16 H 1.48496 * 109.47115 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47398 * 299.99973 * 14 12 10 18 18 C 1.46507 * 119.99965 * 0.02562 * 9 7 6 19 19 C 1.52994 * 117.50053 * 183.46525 * 18 9 7 20 20 C 1.52999 * 117.49967 * 114.84081 * 18 9 7 21 21 C 1.51270 * 118.29980 * 51.34856 * 5 4 3 22 22 C 1.52963 * 109.41123 * 120.31873 * 2 1 3 23 23 H 1.09008 * 109.47300 * 299.82153 * 1 2 3 24 24 H 1.09000 * 109.47163 * 59.82296 * 1 2 3 25 25 H 1.09000 * 109.47327 * 179.82745 * 1 2 3 26 26 H 1.09003 * 109.41090 * 240.17249 * 2 1 3 27 27 H 1.08995 * 109.47889 * 303.65049 * 3 2 1 28 28 H 1.09004 * 109.48207 * 63.68647 * 3 2 1 29 29 H 1.09004 * 109.62236 * 185.65701 * 4 3 2 30 30 H 1.09004 * 109.78339 * 65.18427 * 4 3 2 31 31 H 1.08002 * 120.00318 * 163.82392 * 6 5 4 32 32 H 0.97003 * 120.00188 * 184.99578 * 13 12 10 33 33 H 1.08998 * 115.54579 * 329.16918 * 18 9 7 34 34 H 1.09004 * 117.50013 * 359.97438 * 19 18 9 35 35 H 1.08998 * 117.50133 * 145.02069 * 19 18 9 36 36 H 1.09001 * 117.49537 * 214.98290 * 20 18 9 37 37 H 1.09001 * 117.49885 * 359.97438 * 20 18 9 38 38 H 1.08995 * 109.63059 * 188.94040 * 21 5 4 39 39 H 1.09001 * 109.78909 * 68.45921 * 21 5 4 40 40 H 1.08998 * 109.48062 * 296.34325 * 22 2 1 41 41 H 1.08995 * 109.48441 * 56.37452 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0370 1.4431 0.0000 4 6 3.5664 1.4452 -0.0925 5 6 4.1173 0.5911 1.0279 6 6 5.0615 1.0584 1.8416 7 6 5.8322 2.2513 1.4643 8 8 5.6828 2.7493 0.3643 9 7 6.7043 2.7940 2.3368 10 6 7.4215 3.9051 1.9856 11 1 8.4802 3.9524 2.1936 12 6 6.7871 4.9734 1.3610 13 7 5.4785 4.9851 1.2478 14 14 7.7959 6.3918 0.6829 15 1 8.7373 5.8820 -0.3464 16 1 6.8893 7.3955 0.0699 17 1 8.5633 7.0250 1.7852 18 6 6.8845 2.1943 3.6613 19 6 7.8278 2.9030 4.6353 20 6 8.2514 1.5862 3.9814 21 6 3.5680 -0.8078 1.1997 22 6 2.0383 -0.7283 1.2454 23 1 -0.3634 0.5111 0.8916 24 1 -0.3633 0.5166 -0.8884 25 1 -0.3634 -1.0276 -0.0031 26 1 1.8922 -0.5114 -0.8919 27 1 1.6203 1.9747 -0.8554 28 1 1.7277 1.9371 0.9212 29 1 3.9378 2.4651 0.0082 30 1 3.8786 1.0351 -1.0530 31 1 5.2613 0.5607 2.7791 32 1 5.0411 5.6930 0.7493 33 1 6.0051 1.7038 4.0787 34 1 8.3147 3.8152 4.2905 35 1 7.5692 2.8789 5.6939 36 1 8.2714 0.6958 4.6098 37 1 9.0166 1.6319 3.2065 38 1 3.9402 -1.2356 2.1305 39 1 3.8772 -1.4313 0.3609 40 1 1.7290 -0.1829 2.1370 41 1 1.6225 -1.7354 1.2727 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265146362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:03 Heat of formation + Delta-G solvation = 6.880564 kcal Electronic energy + Delta-G solvation = -20564.678903 eV Core-core repulsion = 17638.729638 eV Total energy + Delta-G solvation = -2925.949264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.93309 -37.88192 -35.98926 -33.33936 -32.42314 -30.88774 -30.48516 -28.47319 -25.41922 -23.65414 -22.50318 -21.67768 -21.19797 -20.42830 -19.50174 -17.66395 -16.24783 -15.99078 -14.97270 -14.49164 -14.22181 -14.04734 -13.92496 -13.59680 -13.46030 -13.16505 -12.78221 -12.36190 -12.18735 -11.84826 -11.62043 -11.37477 -11.18858 -10.97142 -10.87403 -10.85502 -10.70108 -10.55588 -10.43457 -10.19550 -9.99318 -9.84861 -9.79013 -9.53149 -8.70548 -8.07195 -7.57712 -6.93736 -5.98326 -3.84475 2.39015 3.33305 3.38290 3.39957 4.31370 4.52523 4.87448 4.96258 5.04167 5.07448 5.13419 5.36404 5.45492 5.52778 5.62310 5.66604 5.78295 5.81351 5.82795 5.84219 5.89916 6.02177 6.06175 6.10360 6.18712 6.22455 6.25783 6.31467 6.45105 6.46607 6.51478 6.58225 6.79057 6.84261 6.95353 7.06734 7.35737 7.62364 7.65359 8.35331 9.14996 9.27161 9.74030 10.44311 11.04043 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.006329 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.646236 B = 4422.907749 C = 5459.964614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.107 4.107 4 C -0.106 4.106 5 C -0.074 4.074 6 C -0.194 4.194 7 C 0.507 3.493 8 O -0.518 6.518 9 N -0.426 5.426 10 C -0.335 4.335 11 H 0.075 0.925 12 C 0.063 3.937 13 N -0.824 5.824 14 Si 0.911 3.089 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.078 3.922 19 C -0.176 4.176 20 C -0.208 4.208 21 C -0.084 4.084 22 C -0.109 4.109 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.263 0.737 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -9.569 2.350 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.077 4.077 6 C -0.215 4.215 7 C 0.298 3.702 8 O -0.397 6.397 9 N -0.146 5.146 10 C -0.463 4.463 11 H 0.092 0.908 12 C -0.148 4.148 13 N -0.458 5.458 14 Si 0.738 3.262 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.028 4.028 19 C -0.214 4.214 20 C -0.248 4.248 21 C -0.121 4.121 22 C -0.146 4.146 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.711 -9.140 1.755 10.920 hybrid contribution 0.459 0.580 -0.091 0.746 sum -5.252 -8.560 1.664 10.180 Atomic orbital electron populations 1.21842 0.95895 1.00997 1.01606 1.21165 0.94763 0.97209 0.98178 1.21626 0.96476 0.94926 1.01475 1.21350 0.92906 1.04344 0.95599 1.22312 0.94209 0.94217 0.96913 1.22784 0.99102 1.00309 0.99298 1.17985 0.83558 0.83522 0.85159 1.90474 1.65282 1.62086 1.21898 1.42657 1.39091 1.24794 1.08015 1.18832 0.91698 0.92714 1.43029 0.90777 1.25290 0.94942 0.97168 0.97389 1.69847 1.08068 1.32142 1.35741 0.86297 0.79587 0.81148 0.79157 1.20170 1.21172 1.20319 1.21686 0.92087 1.00653 0.88383 1.23071 1.04607 0.96957 0.96729 1.23305 1.01248 0.96309 1.03893 1.20821 0.95293 0.94382 1.01644 1.21600 0.95122 0.99641 0.98251 0.92860 0.92929 0.93224 0.91563 0.92384 0.92301 0.85349 0.92401 0.87546 0.92657 0.87898 0.87588 0.89866 0.89886 0.89182 0.91743 0.90965 0.92006 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.18 37.15 0.34 -1.29 16 2 C -0.09 -1.25 2.62 -90.67 -0.24 -1.49 16 3 C -0.11 -1.73 5.21 -26.64 -0.14 -1.87 16 4 C -0.11 -2.08 5.20 -27.49 -0.14 -2.22 16 5 C -0.07 -1.39 5.37 -100.58 -0.54 -1.93 16 6 C -0.19 -4.06 8.86 -37.84 -0.34 -4.39 16 7 C 0.51 13.14 6.68 -12.73 -0.09 13.06 16 8 O -0.52 -15.02 10.81 5.22 0.06 -14.96 16 9 N -0.43 -10.87 2.84 -109.11 -0.31 -11.18 16 10 C -0.34 -9.21 7.91 -15.02 -0.12 -9.33 16 11 H 0.07 1.98 7.27 -52.48 -0.38 1.59 16 12 C 0.06 1.75 4.71 -17.45 -0.08 1.67 16 13 N -0.82 -24.29 11.07 55.50 0.61 -23.67 16 14 Si 0.91 21.78 29.56 -169.99 -5.03 16.76 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.08 1.61 5.73 -67.93 -0.39 1.22 16 19 C -0.18 -3.24 9.80 -26.73 -0.26 -3.50 16 20 C -0.21 -3.66 10.35 -26.73 -0.28 -3.94 16 21 C -0.08 -1.21 6.04 -27.48 -0.17 -1.37 16 22 C -0.11 -1.39 5.22 -26.63 -0.14 -1.53 16 23 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.13 3.17 5.06 -51.95 -0.26 2.90 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.11 1.95 6.32 -52.49 -0.33 1.62 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.10 1.93 6.64 -51.93 -0.34 1.58 16 34 H 0.11 2.15 6.75 -51.93 -0.35 1.80 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.06 0.85 7.94 -51.93 -0.41 0.43 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 322.62 15.07 4.86 4.86 Total: -1.00 -30.92 322.62 -9.09 -40.01 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.72 Total: 5.08 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.57 Total: -16.90 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.30 Total: -34.85 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.06 Total: -14.96 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.92 -9.09 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265146362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.894 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds