Wall clock time and date at job start Mon Mar 30 2020 00:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52954 * 109.35959 * 2 1 4 4 C 1.53225 * 109.40454 * 183.66801 * 3 2 1 5 5 C 1.51262 * 108.54108 * 305.37141 * 4 3 2 6 6 C 1.33118 * 120.85330 * 231.33133 * 5 4 3 7 7 C 1.46949 * 120.00063 * 343.81387 * 6 5 4 8 8 O 1.21668 * 119.99967 * 354.14843 * 7 6 5 9 9 N 1.34773 * 120.00465 * 174.14037 * 7 6 5 10 10 C 1.36821 * 120.00239 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99921 * 225.39485 * 10 9 7 12 12 C 1.39070 * 119.99882 * 45.39738 * 10 9 7 13 13 N 1.31347 * 119.99900 * 7.92769 * 12 10 9 14 14 Si 1.86799 * 119.99905 * 187.93197 * 12 10 9 15 15 H 1.48506 * 109.47139 * 60.00029 * 14 12 10 16 16 H 1.48496 * 109.47115 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47398 * 299.99973 * 14 12 10 18 18 C 1.46507 * 119.99965 * 0.02562 * 9 7 6 19 19 C 1.52994 * 117.50053 * 183.46525 * 18 9 7 20 20 C 1.52999 * 117.49967 * 114.84081 * 18 9 7 21 21 C 1.51270 * 118.29980 * 51.34856 * 5 4 3 22 22 C 1.52963 * 109.41123 * 120.31873 * 2 1 3 23 23 H 1.09008 * 109.47300 * 299.82153 * 1 2 3 24 24 H 1.09000 * 109.47163 * 59.82296 * 1 2 3 25 25 H 1.09000 * 109.47327 * 179.82745 * 1 2 3 26 26 H 1.09003 * 109.41090 * 240.17249 * 2 1 3 27 27 H 1.08995 * 109.47889 * 303.65049 * 3 2 1 28 28 H 1.09004 * 109.48207 * 63.68647 * 3 2 1 29 29 H 1.09004 * 109.62236 * 185.65701 * 4 3 2 30 30 H 1.09004 * 109.78339 * 65.18427 * 4 3 2 31 31 H 1.08002 * 120.00318 * 163.82392 * 6 5 4 32 32 H 0.97003 * 120.00188 * 184.99578 * 13 12 10 33 33 H 1.08998 * 115.54579 * 329.16918 * 18 9 7 34 34 H 1.09004 * 117.50013 * 359.97438 * 19 18 9 35 35 H 1.08998 * 117.50133 * 145.02069 * 19 18 9 36 36 H 1.09001 * 117.49537 * 214.98290 * 20 18 9 37 37 H 1.09001 * 117.49885 * 359.97438 * 20 18 9 38 38 H 1.08995 * 109.63059 * 188.94040 * 21 5 4 39 39 H 1.09001 * 109.78909 * 68.45921 * 21 5 4 40 40 H 1.08998 * 109.48062 * 296.34325 * 22 2 1 41 41 H 1.08995 * 109.48441 * 56.37452 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0370 1.4431 0.0000 4 6 3.5664 1.4452 -0.0925 5 6 4.1173 0.5911 1.0279 6 6 5.0615 1.0584 1.8416 7 6 5.8322 2.2513 1.4643 8 8 5.6828 2.7493 0.3643 9 7 6.7043 2.7940 2.3368 10 6 7.4215 3.9051 1.9856 11 1 8.4802 3.9524 2.1936 12 6 6.7871 4.9734 1.3610 13 7 5.4785 4.9851 1.2478 14 14 7.7959 6.3918 0.6829 15 1 8.7373 5.8820 -0.3464 16 1 6.8893 7.3955 0.0699 17 1 8.5633 7.0250 1.7852 18 6 6.8845 2.1943 3.6613 19 6 7.8278 2.9030 4.6353 20 6 8.2514 1.5862 3.9814 21 6 3.5680 -0.8078 1.1997 22 6 2.0383 -0.7283 1.2454 23 1 -0.3634 0.5111 0.8916 24 1 -0.3633 0.5166 -0.8884 25 1 -0.3634 -1.0276 -0.0031 26 1 1.8922 -0.5114 -0.8919 27 1 1.6203 1.9747 -0.8554 28 1 1.7277 1.9371 0.9212 29 1 3.9378 2.4651 0.0082 30 1 3.8786 1.0351 -1.0530 31 1 5.2613 0.5607 2.7791 32 1 5.0411 5.6930 0.7493 33 1 6.0051 1.7038 4.0787 34 1 8.3147 3.8152 4.2905 35 1 7.5692 2.8789 5.6939 36 1 8.2714 0.6958 4.6098 37 1 9.0166 1.6319 3.2065 38 1 3.9402 -1.2356 2.1305 39 1 3.8772 -1.4313 0.3609 40 1 1.7290 -0.1829 2.1370 41 1 1.6225 -1.7354 1.2727 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265146362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:03 Heat of formation + Delta-G solvation = -9.857695 kcal Electronic energy + Delta-G solvation = -20565.404728 eV Core-core repulsion = 17638.729638 eV Total energy + Delta-G solvation = -2926.675090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60618 -39.30680 -37.65769 -35.00908 -34.08234 -32.80276 -31.79714 -29.85216 -27.21570 -25.10054 -23.80734 -23.15513 -22.81385 -21.93254 -20.92060 -19.26329 -18.05935 -17.73244 -16.83002 -16.13688 -15.79548 -15.29570 -15.14220 -15.11449 -15.02154 -14.69758 -14.26125 -13.82722 -13.64099 -13.23881 -13.11892 -12.85724 -12.78002 -12.75018 -12.42829 -12.29832 -12.22803 -12.11536 -11.86350 -11.67501 -11.50933 -11.32383 -11.04876 -11.01191 -10.70796 -9.71151 -9.42966 -8.90018 -8.06798 -5.97860 0.79701 1.37446 1.43298 1.47731 2.35392 2.88463 3.14336 3.20426 3.51339 3.84774 3.90454 4.00065 4.09601 4.16599 4.23481 4.30791 4.42051 4.51195 4.57769 4.62282 4.68284 4.79185 4.85166 4.88730 4.96395 5.02378 5.04751 5.10012 5.21419 5.25057 5.27512 5.31394 5.43502 5.44616 5.47520 5.52680 5.59111 5.80178 6.01609 6.28003 7.09474 7.31504 7.77594 8.50059 8.93477 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.006329 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.646236 B = 4422.907749 C = 5459.964614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.101 4.101 4 C -0.109 4.109 5 C -0.052 4.052 6 C -0.223 4.223 7 C 0.490 3.510 8 O -0.566 6.566 9 N -0.445 5.445 10 C -0.346 4.346 11 H 0.074 0.926 12 C 0.009 3.991 13 N -0.861 5.861 14 Si 0.971 3.029 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.258 1.258 18 C 0.045 3.955 19 C -0.171 4.171 20 C -0.180 4.180 21 C -0.081 4.081 22 C -0.105 4.105 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.135 0.865 32 H 0.255 0.745 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.099 -12.230 3.690 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.139 4.139 4 C -0.146 4.146 5 C -0.055 4.055 6 C -0.244 4.244 7 C 0.282 3.718 8 O -0.449 6.449 9 N -0.165 5.165 10 C -0.475 4.475 11 H 0.091 0.909 12 C -0.197 4.197 13 N -0.496 5.496 14 Si 0.796 3.204 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.182 1.182 18 C -0.060 4.060 19 C -0.208 4.208 20 C -0.219 4.219 21 C -0.117 4.117 22 C -0.142 4.142 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.065 0.935 33 H 0.140 0.860 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.330 -11.812 3.141 13.764 hybrid contribution 0.665 1.346 -0.540 1.596 sum -5.664 -10.466 2.601 12.181 Atomic orbital electron populations 1.21799 0.93940 1.02491 1.01696 1.21143 0.96362 0.94474 0.98964 1.21563 0.93675 0.97766 1.00868 1.21194 0.95587 1.01603 0.96177 1.22792 0.92215 0.95920 0.94555 1.22680 1.00673 0.99398 1.01684 1.18867 0.83689 0.84396 0.84802 1.90453 1.66735 1.63830 1.23860 1.42898 1.38903 1.24614 1.10062 1.19058 0.91976 0.93428 1.42991 0.90868 1.26135 0.95868 0.99699 0.97963 1.69997 1.09611 1.32851 1.37162 0.85363 0.78057 0.78224 0.78756 1.20592 1.21364 1.18230 1.21983 0.94377 1.02758 0.86883 1.23119 1.03235 0.96417 0.98053 1.23307 0.98062 0.97408 1.03126 1.20928 0.96443 0.90945 1.03427 1.21613 0.93680 1.01394 0.97543 0.93003 0.92763 0.90972 0.90939 0.92238 0.93649 0.90689 0.92605 0.84691 0.93540 0.86004 0.90147 0.86410 0.85713 0.90981 0.89625 0.89310 0.92461 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.18 71.98 0.66 -2.05 16 2 C -0.09 -2.16 2.62 -10.82 -0.03 -2.19 16 3 C -0.10 -3.27 5.21 30.65 0.16 -3.11 16 4 C -0.11 -4.43 5.20 30.10 0.16 -4.28 16 5 C -0.05 -1.94 5.37 -17.24 -0.09 -2.03 16 6 C -0.22 -9.39 8.86 23.40 0.21 -9.18 16 7 C 0.49 26.48 6.68 86.53 0.58 27.06 16 8 O -0.57 -34.96 10.81 -4.25 -0.05 -35.01 16 9 N -0.45 -23.41 2.84 -617.35 -1.76 -25.16 16 10 C -0.35 -19.74 7.91 84.11 0.67 -19.08 16 11 H 0.07 4.04 7.27 -2.91 -0.02 4.02 16 12 C 0.01 0.55 4.71 84.96 0.40 0.95 16 13 N -0.86 -53.65 11.07 21.68 0.24 -53.41 16 14 Si 0.97 46.50 29.56 68.60 2.03 48.53 16 15 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 18 C 0.05 1.83 5.73 44.99 0.26 2.08 16 19 C -0.17 -6.03 9.80 30.59 0.30 -5.73 16 20 C -0.18 -5.95 10.35 30.59 0.32 -5.63 16 21 C -0.08 -2.04 6.04 30.11 0.18 -1.85 16 22 C -0.10 -2.28 5.22 30.66 0.16 -2.12 16 23 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 3.99 5.06 -2.77 -0.01 3.98 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.14 4.74 6.32 -2.91 -0.02 4.72 16 32 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.12 4.37 6.64 -2.39 -0.02 4.36 16 34 H 0.08 3.27 6.75 -2.39 -0.02 3.25 16 35 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.09 1.87 7.94 -2.39 -0.02 1.85 16 39 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -73.03 322.62 5.38 -67.64 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.99 Total: 24.58 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.92 Total: -27.16 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.52 Total: -78.58 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.05 Total: -35.01 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -73.03 5.38 -67.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265146362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.785 kcal (2) G-P(sol) polarization free energy of solvation -73.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds