Wall clock time and date at job start Mon Mar 30 2020 00:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34519 * 125.79230 * 2 1 4 4 C 1.41380 * 106.84479 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.83948 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.78744 * 180.02562 * 5 4 3 7 7 H 1.08996 * 108.75887 * 341.64177 * 6 5 4 8 8 C 1.45857 * 108.79255 * 100.00218 * 6 5 4 9 9 C 1.54517 * 111.58441 * 182.09744 * 8 6 5 10 10 C 1.50467 * 108.85730 * 282.82070 * 9 8 6 11 11 C 1.54293 * 113.03619 * 92.14960 * 10 9 8 12 12 C 1.54063 * 112.28808 * 318.30172 * 11 10 9 13 13 N 1.44273 * 111.97731 * 318.91157 * 12 11 10 14 14 C 1.46894 * 111.00274 * 219.31293 * 13 12 11 15 15 C 1.50700 * 109.47048 * 68.03045 * 14 13 12 16 16 H 1.07999 * 119.99988 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00219 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99883 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00151 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46880 * 89.99710 * 19 17 15 21 21 H 1.48494 * 109.46983 * 209.99821 * 19 17 15 22 22 H 1.48494 * 109.46835 * 330.00274 * 19 17 15 23 23 O 1.34305 * 125.79072 * 180.35271 * 2 1 3 24 24 H 1.09007 * 109.47398 * 90.00034 * 1 2 3 25 25 H 1.08995 * 109.47464 * 209.99719 * 1 2 3 26 26 H 1.08995 * 109.47331 * 330.00227 * 1 2 3 27 27 H 1.08001 * 126.57160 * 0.02562 * 3 2 1 28 28 H 1.08000 * 126.58219 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.06514 * 61.55346 * 8 6 5 30 30 H 1.09007 * 109.05785 * 302.63520 * 8 6 5 31 31 H 1.08999 * 109.57094 * 42.63400 * 9 8 6 32 32 H 1.08998 * 109.57511 * 163.01291 * 9 8 6 33 33 H 1.09000 * 108.77172 * 213.06784 * 10 9 8 34 34 H 1.09001 * 108.76578 * 331.23663 * 10 9 8 35 35 H 1.08994 * 108.92010 * 197.57623 * 11 10 9 36 36 H 1.09002 * 108.91814 * 79.02162 * 11 10 9 37 37 H 1.09005 * 108.98098 * 198.27535 * 12 11 10 38 38 H 1.09000 * 108.98229 * 79.55843 * 12 11 10 39 39 H 1.09007 * 109.47075 * 188.02677 * 14 13 12 40 40 H 1.09001 * 109.47301 * 308.03009 * 14 13 12 41 41 H 0.97008 * 120.00312 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6378 -0.0019 7 1 5.6489 -1.0799 -0.3263 8 6 4.9938 -2.1166 1.3577 9 6 6.2347 -3.0335 1.4409 10 6 5.8741 -4.3902 0.8991 11 6 6.1722 -4.5373 -0.6076 12 6 5.7778 -3.2805 -1.4067 13 7 4.5193 -2.7318 -0.9635 14 6 3.7210 -2.2587 -2.1022 15 6 3.2781 -3.4378 -2.9296 16 1 3.5609 -4.4386 -2.6383 17 6 2.5117 -3.2390 -4.0584 18 7 2.1669 -2.0204 -4.4129 19 14 1.9633 -4.7006 -5.0844 20 1 0.6543 -5.1927 -4.5847 21 1 1.8271 -4.2858 -6.5037 22 1 2.9723 -5.7850 -4.9801 23 8 2.2924 -1.0894 -0.0067 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.9664 2.1204 0.0004 28 1 4.5212 1.2433 -0.0012 29 1 4.1169 -2.6737 1.6874 30 1 5.1388 -1.2608 2.0171 31 1 7.0442 -2.6071 0.8486 32 1 6.5503 -3.1275 2.4800 33 1 6.4388 -5.1468 1.4439 34 1 4.8106 -4.5626 1.0647 35 1 5.6176 -5.3914 -0.9958 36 1 7.2385 -4.7205 -0.7406 37 1 5.6986 -3.5418 -2.4620 38 1 6.5553 -2.5260 -1.2872 39 1 2.8455 -1.7233 -1.7348 40 1 4.3245 -1.5902 -2.7163 41 1 1.6274 -1.8805 -5.2068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265635191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:24 Heat of formation + Delta-G solvation = 15.123357 kcal Electronic energy + Delta-G solvation = -21096.309148 eV Core-core repulsion = 18170.717318 eV Total energy + Delta-G solvation = -2925.591830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12180 -38.63348 -34.18474 -33.05648 -32.55322 -32.09365 -30.67639 -27.74228 -26.34423 -25.11639 -23.57876 -21.93908 -21.08716 -20.42065 -19.43606 -18.83777 -16.47113 -16.27306 -15.53959 -15.10000 -14.77159 -14.34127 -14.12216 -13.83792 -13.27561 -12.87054 -12.76819 -12.64997 -12.36831 -12.20680 -12.13718 -11.96250 -11.74488 -11.37926 -11.01110 -10.91573 -10.68151 -10.50823 -10.32627 -10.25934 -10.08677 -9.86411 -9.59437 -9.28478 -9.08910 -8.37007 -7.65020 -7.24992 -5.96748 -3.97089 2.34205 3.15555 3.33994 3.39770 3.43361 3.51219 4.44435 4.75120 4.95216 5.28340 5.30384 5.37984 5.42597 5.54687 5.55355 5.62430 5.76182 5.77328 5.82063 5.90252 5.92695 6.04926 6.08108 6.10558 6.31080 6.36678 6.39388 6.51126 6.58852 6.62245 6.71370 6.74024 6.81995 6.87648 7.08249 7.39894 7.41885 7.77196 7.89388 8.18913 8.30301 8.58228 9.10308 9.65342 11.13703 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.009804 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.840398 B = 2855.356951 C = 4574.414046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.014 4.014 3 C -0.219 4.219 4 C -0.223 4.223 5 C 0.017 3.983 6 C 0.163 3.837 7 H 0.055 0.945 8 C -0.110 4.110 9 C -0.109 4.109 10 C -0.109 4.109 11 C -0.107 4.107 12 C 0.060 3.940 13 N -0.516 5.516 14 C 0.183 3.817 15 C -0.502 4.502 16 H 0.062 0.938 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 O -0.146 6.146 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.021 0.979 39 H 0.053 0.947 40 H -0.014 1.014 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 2.649 10.879 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 C -0.238 4.238 4 C -0.243 4.243 5 C -0.034 4.034 6 C 0.055 3.945 7 H 0.073 0.927 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.147 4.147 11 C -0.145 4.145 12 C -0.069 4.069 13 N -0.241 5.241 14 C 0.059 3.941 15 C -0.541 4.541 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 O -0.042 6.042 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.004 0.996 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.193 2.064 10.962 11.603 hybrid contribution 0.169 0.242 -1.238 1.273 sum 3.362 2.306 9.724 10.544 Atomic orbital electron populations 1.20227 0.85896 1.03020 1.03567 1.22357 0.93997 0.84702 1.05469 1.21338 0.92706 0.98796 1.10990 1.21384 0.97876 0.93762 1.11249 1.22307 0.83525 0.93775 1.03791 1.19285 0.89683 0.89962 0.95579 0.92699 1.20673 0.99076 0.99453 0.95548 1.21274 0.97235 0.96226 0.99941 1.21185 1.02099 0.95776 0.95601 1.21936 0.98963 0.98869 0.94741 1.21806 0.89860 0.95320 0.99955 1.61911 1.16363 1.28713 1.17149 1.20114 0.92526 0.95702 0.85761 1.21128 1.31801 0.93334 1.07802 0.91950 1.24960 0.96321 0.95690 0.97577 1.69981 1.37915 1.19966 1.25721 0.86549 0.79108 0.82787 0.79271 1.20708 1.21412 1.19897 1.84209 1.15940 1.34059 1.69969 0.90027 0.90908 0.90146 0.84324 0.84382 0.90932 0.92222 0.92297 0.92429 0.93741 0.91363 0.92067 0.93371 0.90240 0.96075 0.92963 0.99640 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.42 36.00 0.37 -0.65 16 2 C -0.01 -0.27 7.32 -35.63 -0.26 -0.53 16 3 C -0.22 -3.87 10.81 -39.70 -0.43 -4.30 16 4 C -0.22 -4.11 10.79 -39.70 -0.43 -4.54 16 5 C 0.02 0.34 4.34 -35.62 -0.15 0.19 16 6 C 0.16 3.07 2.08 -71.75 -0.15 2.92 16 7 H 0.06 1.00 7.21 -51.93 -0.37 0.63 16 8 C -0.11 -1.72 4.68 -29.31 -0.14 -1.86 16 9 C -0.11 -1.50 5.60 -27.20 -0.15 -1.65 16 10 C -0.11 -1.62 5.42 -27.32 -0.15 -1.76 16 11 C -0.11 -1.75 6.14 -25.50 -0.16 -1.91 16 12 C 0.06 1.17 4.82 -4.67 -0.02 1.15 16 13 N -0.52 -11.29 4.16 -234.31 -0.98 -12.26 16 14 C 0.18 4.89 4.00 -4.98 -0.02 4.87 16 15 C -0.50 -14.33 8.16 -34.44 -0.28 -14.61 16 16 H 0.06 1.77 7.70 -52.49 -0.40 1.36 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 O -0.15 -3.20 8.61 5.70 0.05 -3.15 16 24 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 29 H 0.07 1.23 7.59 -51.93 -0.39 0.84 16 30 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.06 0.80 7.15 -51.93 -0.37 0.43 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.13 7.38 -51.93 -0.38 0.75 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.75 6.77 -51.93 -0.35 1.40 16 38 H 0.02 0.38 6.51 -51.93 -0.34 0.04 16 39 H 0.05 1.51 4.65 -51.92 -0.24 1.26 16 40 H -0.01 -0.41 8.09 -51.93 -0.42 -0.83 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -31.38 319.56 -9.10 -40.48 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.64 Total: 0.61 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -2.06 Total: -21.17 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.24 Total: -38.58 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: 0.05 Total: -3.15 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.38 -9.10 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265635191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.607 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds