Wall clock time and date at job start Mon Mar 30 2020 00:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.44833 * 2 1 4 4 C 1.53341 * 109.46146 * 119.96824 * 2 1 3 5 5 C 1.50931 * 108.42510 * 69.97592 * 4 2 1 6 6 O 1.33833 * 127.79765 * 196.80415 * 5 4 2 7 7 C 1.34520 * 109.41562 * 179.83445 * 6 5 4 8 8 C 1.34765 * 108.48662 * 0.04453 * 7 6 5 9 9 C 1.34884 * 123.90213 * 16.70539 * 5 4 2 10 10 C 1.50641 * 124.55996 * 0.16568 * 9 5 4 11 11 H 1.08997 * 109.68135 * 256.58875 * 10 9 5 12 12 N 1.46906 * 109.68221 * 136.07058 * 10 9 5 13 13 C 1.46901 * 110.99793 * 85.51993 * 12 10 9 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46725 * 60.00489 * 19 17 15 21 21 H 1.48505 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00464 * 19 17 15 23 23 C 1.53106 * 109.41403 * 240.06674 * 2 1 3 24 24 H 1.09001 * 109.46728 * 300.03185 * 1 2 3 25 25 H 1.09002 * 109.47381 * 60.03056 * 1 2 3 26 26 H 1.09000 * 109.47191 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46853 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47429 * 299.96742 * 3 2 1 29 29 H 1.08993 * 109.47311 * 59.97083 * 3 2 1 30 30 H 1.08997 * 109.67029 * 310.24068 * 4 2 1 31 31 H 1.08997 * 109.66890 * 189.70820 * 4 2 1 32 32 H 1.08000 * 125.75774 * 180.02562 * 7 6 5 33 33 H 1.07999 * 126.68251 * 179.97438 * 8 7 6 34 34 H 1.00898 * 110.99995 * 209.47071 * 12 10 9 35 35 H 1.09002 * 109.47401 * 59.99808 * 13 12 10 36 36 H 1.09001 * 109.46874 * 299.99821 * 13 12 10 37 37 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 38 38 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 39 39 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.43749 * 189.93542 * 23 2 1 41 41 H 1.08999 * 109.51962 * 69.90513 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 6 2.0409 -0.7222 1.2525 5 6 1.7375 -2.1940 1.1116 6 8 1.7251 -3.1246 2.0733 7 6 1.4038 -4.3163 1.5383 8 6 1.2077 -4.1517 0.2152 9 6 1.4230 -2.7888 -0.0574 10 6 1.3333 -2.0764 -1.3817 11 1 0.2870 -1.9219 -1.6453 12 7 1.9920 -2.8791 -2.4209 13 6 1.0687 -3.8750 -2.9811 14 6 1.7892 -4.6900 -4.0570 15 6 0.8423 -5.7121 -4.6312 16 1 -0.1721 -5.7739 -4.2655 17 6 1.2706 -6.5676 -5.6240 18 7 2.5056 -6.4920 -6.0695 19 14 0.0970 -7.8350 -6.3352 20 1 -1.0722 -7.1445 -6.9364 21 1 0.7963 -8.6260 -7.3796 22 1 -0.3658 -8.7424 -5.2546 23 6 2.0389 -0.7205 -1.2514 24 1 -0.3633 0.5143 0.8897 25 1 -0.3634 0.5134 -0.8903 26 1 -0.3633 -1.0277 0.0005 27 1 3.1295 1.4431 0.0005 28 1 1.6764 1.9562 -0.8902 29 1 1.6755 1.9565 0.8897 30 1 1.5380 -0.3266 2.1349 31 1 3.1170 -0.5767 1.3466 32 1 1.3179 -5.2478 2.0780 33 1 0.9382 -4.9174 -0.4972 34 1 2.3717 -2.2897 -3.1465 35 1 0.2110 -3.3675 -3.4226 36 1 0.7283 -4.5411 -2.1883 37 1 2.1300 -4.0241 -4.8498 38 1 2.6466 -5.1974 -3.6151 39 1 2.8068 -7.0936 -6.7682 40 1 3.1144 -0.8770 -1.1677 41 1 1.8270 -0.1144 -2.1322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273180722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:23 Heat of formation + Delta-G solvation = -4.916082 kcal Electronic energy + Delta-G solvation = -20232.609790 eV Core-core repulsion = 17306.148985 eV Total energy + Delta-G solvation = -2926.460805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50417 -38.84525 -35.82560 -33.25143 -32.21221 -30.55450 -30.19529 -27.69831 -27.33577 -26.07856 -24.02602 -22.57570 -21.17006 -20.59307 -19.95756 -17.93383 -16.87760 -16.30437 -15.97991 -15.17324 -15.00920 -14.66200 -14.48213 -14.31186 -13.71761 -13.39703 -13.04188 -12.90128 -12.48477 -12.25114 -12.09239 -12.04293 -11.83757 -11.64864 -11.47803 -11.06533 -10.89471 -10.75024 -10.70751 -10.64098 -10.37173 -9.93982 -9.32877 -9.28159 -9.12497 -8.33541 -8.03587 -7.76042 -5.98021 -4.00691 1.98611 2.95365 3.15223 3.34140 3.38530 3.40867 4.41772 4.51260 4.57167 4.63533 4.93479 5.04305 5.19054 5.19565 5.36451 5.37805 5.42893 5.46044 5.51551 5.58551 5.66993 5.74683 5.78607 5.84369 5.98709 6.03264 6.10383 6.22484 6.24902 6.30727 6.43400 6.47825 6.56636 6.86910 7.03917 7.43382 7.53237 7.75651 7.86005 8.00928 8.11974 8.45771 9.06521 9.62962 11.13359 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026597 B = 0.004476 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.481396 B = 6254.223836 C = 6850.928684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.139 4.139 4 C -0.021 4.021 5 C -0.029 4.029 6 O -0.178 6.178 7 C -0.064 4.064 8 C -0.180 4.180 9 C -0.145 4.145 10 C 0.152 3.848 11 H 0.051 0.949 12 N -0.682 5.682 13 C 0.064 3.936 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.113 4.113 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.199 0.801 33 H 0.153 0.847 34 H 0.338 0.662 35 H 0.013 0.987 36 H 0.061 0.939 37 H 0.013 0.987 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.075 0.925 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 13.942 14.827 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.058 4.058 5 C -0.080 4.080 6 O -0.074 6.074 7 C -0.131 4.131 8 C -0.200 4.200 9 C -0.147 4.147 10 C 0.043 3.957 11 H 0.068 0.932 12 N -0.313 5.313 13 C -0.064 4.064 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.215 0.785 33 H 0.170 0.830 34 H 0.156 0.844 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.490 13.477 15.425 20.537 hybrid contribution -1.204 -0.588 -1.187 1.790 sum -2.693 12.888 14.238 19.393 Atomic orbital electron populations 1.21996 0.94193 1.02690 1.01598 1.20522 0.96166 0.94980 0.94009 1.21843 1.01215 0.94548 1.02061 1.20200 1.01665 0.85297 0.98647 1.22120 1.07422 0.91808 0.86613 1.83838 1.69313 1.16887 1.37384 1.24009 1.07264 0.87555 0.94225 1.21741 1.05414 0.97138 0.95659 1.20077 1.05794 0.93903 0.94967 1.19914 0.96338 0.90349 0.89143 0.93153 1.60528 1.37198 1.17997 1.15573 1.22296 0.93084 0.93199 0.97810 1.19057 0.96007 0.94110 0.91957 1.21139 0.97791 1.17168 1.19968 0.92878 1.24990 0.95107 0.97472 0.96690 1.69961 1.16020 1.38415 1.28847 0.86666 0.81004 0.81561 0.78802 1.20302 1.21265 1.20236 1.21894 1.01229 0.94913 0.97021 0.92756 0.92420 0.91762 0.92308 0.92119 0.92451 0.90309 0.89891 0.78452 0.82982 0.84411 0.96830 0.92021 0.96885 0.95688 0.92953 0.90589 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.71 37.16 0.29 -1.22 16 2 C -0.06 -0.56 0.77 -154.28 -0.12 -0.68 16 3 C -0.14 -1.09 8.45 37.16 0.31 -0.78 16 4 C -0.02 -0.23 5.05 -27.59 -0.14 -0.37 16 5 C -0.03 -0.42 6.77 -35.39 -0.24 -0.65 16 6 O -0.18 -2.63 10.65 6.36 0.07 -2.56 16 7 C -0.06 -0.90 12.10 29.50 0.36 -0.55 16 8 C -0.18 -2.98 10.13 -39.90 -0.40 -3.38 16 9 C -0.15 -2.33 4.85 -104.93 -0.51 -2.83 16 10 C 0.15 2.35 2.21 -68.68 -0.15 2.20 16 11 H 0.05 0.80 6.67 -51.93 -0.35 0.46 16 12 N -0.68 -12.53 6.25 -107.75 -0.67 -13.20 16 13 C 0.06 1.37 5.34 -3.82 -0.02 1.35 16 14 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 15 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.11 -1.37 4.15 -26.47 -0.11 -1.48 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.78 5.61 -51.93 -0.29 0.49 16 27 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16 32 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.15 2.67 6.02 -52.49 -0.32 2.35 16 34 H 0.34 5.88 8.38 -39.29 -0.33 5.55 16 35 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 36 H 0.06 1.33 5.40 -51.93 -0.28 1.05 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -31.50 322.07 -7.92 -39.42 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.59 Total: 2.60 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.29 Total: -21.49 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.06 Total: -39.61 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: 0.07 Total: -2.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.50 -7.92 -39.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273180722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.503 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds