Wall clock time and date at job start Mon Mar 30 2020 00:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.44387 * 2 1 4 4 C 1.53334 * 109.45783 * 240.04139 * 2 1 3 5 5 C 1.50930 * 108.43109 * 290.00385 * 4 2 1 6 6 O 1.33832 * 127.80345 * 163.23726 * 5 4 2 7 7 C 1.34511 * 109.41880 * 180.02562 * 6 5 4 8 8 C 1.34771 * 108.48798 * 359.95359 * 7 6 5 9 9 C 1.34881 * 123.90129 * 343.25510 * 5 4 2 10 10 C 1.50647 * 124.56074 * 359.92838 * 9 5 4 11 11 H 1.09000 * 109.71501 * 103.28296 * 10 9 5 12 12 N 1.46892 * 109.68705 * 223.82917 * 10 9 5 13 13 C 1.46898 * 111.00019 * 273.91735 * 12 10 9 14 14 C 1.53003 * 109.47063 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47038 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.53117 * 109.45827 * 119.96822 * 2 1 3 24 24 H 1.09000 * 109.46956 * 300.03510 * 1 2 3 25 25 H 1.09004 * 109.47182 * 60.03386 * 1 2 3 26 26 H 1.09005 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46785 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47425 * 299.96152 * 3 2 1 29 29 H 1.08997 * 109.47261 * 59.96760 * 3 2 1 30 30 H 1.09009 * 109.67623 * 49.73538 * 4 2 1 31 31 H 1.08997 * 109.67592 * 170.26291 * 4 2 1 32 32 H 1.08005 * 125.75933 * 179.97438 * 7 6 5 33 33 H 1.07998 * 126.68115 * 179.97438 * 8 7 6 34 34 H 1.00899 * 111.00308 * 149.95598 * 12 10 9 35 35 H 1.08996 * 109.47442 * 59.99876 * 13 12 10 36 36 H 1.08996 * 109.46826 * 299.99874 * 13 12 10 37 37 H 1.09003 * 109.46825 * 60.00196 * 14 13 12 38 38 H 1.08996 * 109.47396 * 299.99770 * 14 13 12 39 39 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 40 40 H 1.09007 * 109.47427 * 290.05509 * 23 2 1 41 41 H 1.08999 * 109.47828 * 170.02659 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0393 1.4427 0.0000 4 6 2.0408 -0.7220 -1.2526 5 6 1.7379 -2.1939 -1.1119 6 8 1.7263 -3.1246 -2.0735 7 6 1.4082 -4.3168 -1.5381 8 6 1.2133 -4.1527 -0.2147 9 6 1.4246 -2.7890 0.0573 10 6 1.3339 -2.0767 1.3816 11 1 0.2876 -1.9216 1.6447 12 7 1.9919 -2.8791 2.4212 13 6 1.0646 -3.8662 2.9901 14 6 1.7845 -4.6812 4.0663 15 6 0.8330 -5.6935 4.6504 16 1 -0.1837 -5.7495 4.2903 17 6 1.2600 -6.5473 5.6451 18 7 2.4979 -6.4788 6.0840 19 14 0.0807 -7.8025 6.3685 20 1 -0.6278 -7.2048 7.5288 21 1 0.8418 -8.9969 6.8150 22 1 -0.9094 -8.2035 5.3370 23 6 2.0401 -0.7212 1.2507 24 1 -0.3633 0.5144 0.8897 25 1 -0.3634 0.5133 -0.8903 26 1 -0.3634 -1.0277 0.0005 27 1 3.1294 1.4432 0.0005 28 1 1.6763 1.9562 -0.8903 29 1 1.6753 1.9565 0.8897 30 1 1.5375 -0.3266 -2.1350 31 1 3.1168 -0.5761 -1.3471 32 1 1.3236 -5.2486 -2.0776 33 1 0.9456 -4.9188 0.4979 34 1 2.3792 -2.2891 3.1423 35 1 0.7158 -4.5335 2.2020 36 1 0.2125 -3.3508 3.4333 37 1 2.1335 -4.0141 4.8545 38 1 2.6364 -5.1966 3.6227 39 1 3.1102 -5.8272 5.7081 40 1 1.8289 -0.1147 2.1315 41 1 3.1154 -0.8781 1.1666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273180724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:26 Heat of formation + Delta-G solvation = -9.257495 kcal Electronic energy + Delta-G solvation = -20266.384473 eV Core-core repulsion = 17339.735409 eV Total energy + Delta-G solvation = -2926.649063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.55685 -38.90190 -35.94440 -33.52331 -32.29168 -30.58161 -30.13623 -27.61403 -27.25493 -26.12447 -23.73172 -22.61780 -21.29385 -20.82899 -20.08231 -17.99646 -16.95488 -16.64324 -16.05973 -15.26263 -15.08092 -14.72018 -14.43952 -13.91279 -13.73096 -13.50058 -13.12488 -13.11703 -12.53247 -12.38516 -12.14691 -12.08549 -11.78855 -11.72874 -11.44130 -11.41115 -10.86293 -10.77455 -10.76529 -10.49021 -10.12890 -10.08454 -9.64723 -9.36316 -8.55460 -8.30101 -8.09003 -7.86485 -6.33813 -4.02532 1.93659 2.89815 3.10349 3.44449 3.48471 3.64221 4.39926 4.51114 4.57587 4.58608 4.86367 4.98928 5.13446 5.14674 5.31409 5.37913 5.41041 5.44225 5.46706 5.53840 5.62118 5.70221 5.73953 5.78828 5.94447 5.98128 6.04750 6.15083 6.16705 6.23843 6.37343 6.39084 6.47549 6.79782 6.89175 7.30314 7.38574 7.53002 7.72107 7.90882 8.27436 8.49374 8.91551 9.70068 11.07407 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.004492 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.545412 B = 6231.882448 C = 6827.493834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.139 4.139 4 C -0.021 4.021 5 C -0.028 4.028 6 O -0.177 6.177 7 C -0.063 4.063 8 C -0.181 4.181 9 C -0.147 4.147 10 C 0.153 3.847 11 H 0.052 0.948 12 N -0.683 5.683 13 C 0.071 3.929 14 C 0.013 3.987 15 C -0.602 4.602 16 H 0.047 0.953 17 C 0.015 3.985 18 N -0.913 5.913 19 Si 1.071 2.929 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.113 4.113 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.199 0.801 33 H 0.152 0.848 34 H 0.337 0.663 35 H 0.063 0.937 36 H 0.015 0.985 37 H 0.004 0.996 38 H 0.016 0.984 39 H 0.270 0.730 40 H 0.068 0.932 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 14.119 -15.292 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.058 4.058 5 C -0.079 4.079 6 O -0.073 6.073 7 C -0.129 4.129 8 C -0.200 4.200 9 C -0.149 4.149 10 C 0.043 3.957 11 H 0.069 0.931 12 N -0.314 5.314 13 C -0.057 4.057 14 C -0.025 4.025 15 C -0.641 4.641 16 H 0.066 0.934 17 C -0.188 4.188 18 N -0.549 5.549 19 Si 0.900 3.100 20 H -0.215 1.215 21 H -0.210 1.210 22 H -0.215 1.215 23 C -0.151 4.151 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.216 0.784 33 H 0.169 0.831 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.022 0.978 38 H 0.034 0.966 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.105 12.512 -14.907 19.576 hybrid contribution -0.508 1.434 -0.419 1.578 sum -2.613 13.946 -15.327 20.886 Atomic orbital electron populations 1.21999 0.94154 1.02689 1.01651 1.20522 0.96190 0.95003 0.93945 1.21843 1.01217 0.94505 1.02105 1.20207 1.01692 0.85259 0.98678 1.22123 1.07320 0.91824 0.86589 1.83839 1.69322 1.16834 1.37346 1.24015 1.07210 0.87541 0.94170 1.21721 1.05508 0.97102 0.95689 1.20065 1.05955 0.93896 0.94950 1.19909 0.96378 0.90349 0.89060 0.93070 1.60530 1.36792 1.18481 1.15627 1.22138 0.92938 0.93179 0.97400 1.19196 0.96387 0.94550 0.92338 1.22018 0.98521 1.20163 1.23417 0.93441 1.25825 0.98899 0.99227 0.94882 1.70737 1.04968 1.36370 1.42864 0.83515 0.74645 0.76061 0.75794 1.21516 1.20967 1.21516 1.21900 1.01186 0.94868 0.97115 0.92408 0.92684 0.91786 0.92303 0.92394 0.92106 0.90239 0.89864 0.78393 0.83092 0.84504 0.91836 0.96645 0.97821 0.96567 0.91975 0.91370 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.71 37.16 0.29 -1.21 16 2 C -0.06 -0.56 0.77 -154.28 -0.12 -0.68 16 3 C -0.14 -1.08 8.44 37.16 0.31 -0.77 16 4 C -0.02 -0.23 5.05 -27.60 -0.14 -0.37 16 5 C -0.03 -0.40 6.77 -35.39 -0.24 -0.64 16 6 O -0.18 -2.61 10.64 6.39 0.07 -2.54 16 7 C -0.06 -0.88 12.10 29.50 0.36 -0.53 16 8 C -0.18 -3.00 10.14 -39.90 -0.40 -3.40 16 9 C -0.15 -2.35 4.85 -104.93 -0.51 -2.85 16 10 C 0.15 2.36 2.21 -68.69 -0.15 2.21 16 11 H 0.05 0.82 6.65 -51.93 -0.35 0.47 16 12 N -0.68 -12.54 6.25 -107.77 -0.67 -13.21 16 13 C 0.07 1.55 5.34 -3.82 -0.02 1.53 16 14 C 0.01 0.33 4.55 -27.88 -0.13 0.21 16 15 C -0.60 -17.51 9.11 -34.44 -0.31 -17.82 16 16 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 17 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 18 N -0.91 -28.50 13.65 55.43 0.76 -27.74 16 19 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.11 -1.36 4.14 -26.46 -0.11 -1.47 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.78 5.62 -51.93 -0.29 0.49 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.73 8.12 -51.92 -0.42 0.31 16 31 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.20 2.05 8.06 -52.48 -0.42 1.62 16 33 H 0.15 2.67 6.06 -52.49 -0.32 2.36 16 34 H 0.34 5.84 8.37 -39.29 -0.33 5.51 16 35 H 0.06 1.39 5.47 -51.93 -0.28 1.11 16 36 H 0.02 0.33 8.06 -51.93 -0.42 -0.08 16 37 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 38 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 39 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 40 H 0.07 0.75 8.12 -51.92 -0.42 0.33 16 41 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -32.31 320.86 -7.91 -40.22 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.54 Total: 3.25 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -1.27 Total: -25.44 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.08 Total: -40.96 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: 0.07 Total: -2.54 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.31 -7.91 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273180724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.962 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds