Wall clock time and date at job start Mon Mar 30 2020 00:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00112 * 2 1 4 4 H 1.48498 * 109.47181 * 270.00115 * 3 2 1 5 5 H 1.48496 * 109.46845 * 30.00078 * 3 2 1 6 6 H 1.48500 * 109.46978 * 149.99976 * 3 2 1 7 7 C 1.37884 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00011 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47150 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99906 * 249.83235 * 10 9 7 12 12 C 1.53009 * 109.47168 * 274.64818 * 11 10 9 13 13 C 1.52994 * 117.50235 * 243.49381 * 12 11 10 14 14 C 1.52991 * 60.00319 * 252.51711 * 13 12 11 15 15 C 1.34772 * 119.99790 * 69.83199 * 10 9 7 16 16 O 1.21618 * 119.99942 * 183.45507 * 15 10 9 17 17 C 1.47105 * 120.00127 * 3.45751 * 15 10 9 18 18 C 1.31552 * 118.10377 * 213.32099 * 17 15 10 19 19 C 1.50098 * 123.79070 * 180.68623 * 18 17 15 20 20 C 1.53153 * 110.04725 * 342.38704 * 19 18 17 21 21 C 1.53367 * 108.37791 * 50.08515 * 20 19 18 22 22 C 1.50087 * 118.10434 * 33.30195 * 17 15 10 23 23 H 0.96997 * 119.99784 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47108 * 60.00158 * 9 7 2 25 25 H 1.09005 * 109.47331 * 300.00478 * 9 7 2 26 26 H 1.08996 * 109.47620 * 34.65469 * 11 10 9 27 27 H 1.09007 * 109.46855 * 154.65445 * 11 10 9 28 28 H 1.09003 * 115.54408 * 29.20868 * 12 11 10 29 29 H 1.09006 * 117.49686 * 0.02562 * 13 12 11 30 30 H 1.08995 * 117.49663 * 145.01741 * 13 12 11 31 31 H 1.09008 * 117.49363 * 252.51563 * 14 13 12 32 32 H 1.08996 * 117.50584 * 107.48898 * 14 13 12 33 33 H 1.07998 * 118.10722 * 0.39957 * 18 17 15 34 34 H 1.08999 * 109.36416 * 102.77392 * 19 18 17 35 35 H 1.08999 * 109.35407 * 222.37140 * 19 18 17 36 36 H 1.08994 * 109.81473 * 290.34328 * 20 19 18 37 37 H 1.09001 * 109.73665 * 169.77342 * 20 19 18 38 38 H 1.09003 * 109.62620 * 172.11470 * 21 20 19 39 39 H 1.09005 * 109.62968 * 51.52889 * 21 20 19 40 40 H 1.09001 * 109.36016 * 283.03595 * 22 17 15 41 41 H 1.09004 * 109.36469 * 42.75893 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.3465 -4.4536 -1.1914 12 6 1.2895 -5.5596 -1.1652 13 6 1.7819 -7.0055 -1.0770 14 6 1.1953 -6.4758 -2.3870 15 6 2.9468 -3.8633 1.0951 16 8 3.7815 -4.7475 1.0741 17 6 2.7488 -3.0675 2.3163 18 6 3.7961 -2.8256 3.0749 19 6 3.7373 -2.0421 4.3538 20 6 2.4430 -1.2253 4.4101 21 6 1.2681 -2.1586 4.0929 22 6 1.3639 -2.5781 2.6246 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.2126 -3.8441 -2.0850 27 1 3.3404 -4.9012 -1.2025 28 1 0.3618 -5.3111 -0.6497 29 1 2.8589 -7.1689 -1.0372 30 1 1.1782 -7.7085 -0.5031 31 1 0.2056 -6.8304 -2.6749 32 1 1.8863 -6.2907 -3.2094 33 1 4.7526 -3.2172 2.7617 34 1 3.7728 -2.7283 5.2000 35 1 4.5912 -1.3664 4.4030 36 1 2.4812 -0.4215 3.6750 37 1 2.3169 -0.8038 5.4074 38 1 0.3277 -1.6343 4.2634 39 1 1.3193 -3.0414 4.7301 40 1 1.1328 -1.7234 1.9887 41 1 0.6471 -3.3763 2.4314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275720494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:40 Heat of formation + Delta-G solvation = 2.464391 kcal Electronic energy + Delta-G solvation = -20870.174209 eV Core-core repulsion = 17944.033444 eV Total energy + Delta-G solvation = -2926.140764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62920 -37.46168 -36.56968 -34.84095 -32.50516 -30.77324 -30.24112 -27.73944 -26.18508 -23.55892 -22.51382 -22.19591 -22.03512 -20.38543 -18.99284 -17.37347 -16.70395 -15.96471 -15.78426 -14.70520 -14.58799 -14.38508 -14.17015 -13.58214 -13.40985 -13.23958 -12.63417 -12.49035 -12.23619 -12.11065 -11.93180 -11.71352 -11.28520 -11.26922 -11.09049 -10.92217 -10.64868 -10.38341 -10.24326 -10.17225 -9.98515 -9.71833 -9.63750 -9.46430 -8.90201 -8.52793 -8.19569 -7.62844 -6.19743 -4.25060 2.33021 3.21519 3.29264 3.33352 3.84100 3.99924 4.23198 4.33733 5.07635 5.13265 5.17624 5.24297 5.25949 5.34708 5.40033 5.68130 5.79699 5.83914 5.85196 5.88295 5.99104 6.10985 6.11766 6.13488 6.19922 6.23105 6.35456 6.37896 6.52927 6.56870 6.64913 6.68460 6.81517 7.09693 7.13373 7.29472 7.41007 7.61977 7.78640 8.07827 8.36780 8.81541 9.09515 9.41204 10.86325 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.008592 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.090156 B = 3257.933170 C = 4477.800201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.210 3.790 10 N -0.590 5.590 11 C 0.146 3.854 12 C -0.160 4.160 13 C -0.176 4.176 14 C -0.180 4.180 15 C 0.553 3.447 16 O -0.578 6.578 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.082 4.082 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.103 4.103 23 H 0.265 0.735 24 H 0.035 0.965 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.142 0.858 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 -5.365 3.521 6.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.091 3.909 10 N -0.319 5.319 11 C 0.022 3.978 12 C -0.179 4.179 13 C -0.213 4.213 14 C -0.218 4.218 15 C 0.343 3.657 16 O -0.461 6.461 17 C -0.115 4.115 18 C -0.142 4.142 19 C -0.119 4.119 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.139 4.139 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.314 -5.677 3.477 6.785 hybrid contribution 0.378 1.001 -0.232 1.095 sum 1.692 -4.676 3.245 5.937 Atomic orbital electron populations 1.69916 1.05800 1.27266 1.49867 1.24879 0.94818 0.98998 0.94897 0.86605 0.80091 0.83226 0.78354 1.20606 1.20985 1.19642 1.21442 0.93542 0.90350 1.51335 0.92240 1.20234 0.88214 0.82535 0.99934 1.48093 1.40773 1.30981 1.12016 1.20884 0.97422 0.90864 0.88617 1.22810 1.01501 0.91830 1.01800 1.22962 1.01124 0.97066 1.00190 1.22900 1.02191 1.04747 0.91936 1.18603 0.80103 0.82871 0.84125 1.90659 1.35984 1.34629 1.84797 1.20609 0.97021 0.99485 0.94429 1.22382 0.97960 0.98094 0.95735 1.20418 0.98337 0.97829 0.95345 1.21622 0.94553 0.98563 1.01108 1.21600 0.98064 0.98690 0.97015 1.21159 0.92331 1.03629 0.96768 0.92507 0.94667 0.92064 0.90529 0.90576 0.87766 0.88780 0.89475 0.89137 0.88956 0.87578 0.91186 0.91344 0.91004 0.92448 0.91872 0.92930 0.84073 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.42 13.29 55.43 0.74 -22.69 16 2 C 0.07 1.71 5.16 -17.82 -0.09 1.62 16 3 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -13.36 6.99 -34.44 -0.24 -13.60 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.21 4.88 4.84 -5.20 -0.03 4.86 16 10 N -0.59 -12.74 2.56 -176.45 -0.45 -13.19 16 11 C 0.15 2.76 5.69 -4.04 -0.02 2.74 16 12 C -0.16 -2.64 6.01 -90.62 -0.54 -3.19 16 13 C -0.18 -2.59 10.18 -26.74 -0.27 -2.87 16 14 C -0.18 -2.42 10.25 -26.74 -0.27 -2.69 16 15 C 0.55 12.38 7.09 -12.67 -0.09 12.29 16 16 O -0.58 -13.89 15.93 5.26 0.08 -13.80 16 17 C -0.11 -2.31 4.83 -103.17 -0.50 -2.81 16 18 C -0.12 -2.27 9.35 -36.45 -0.34 -2.62 16 19 C -0.08 -1.24 6.11 -28.09 -0.17 -1.41 16 20 C -0.12 -1.87 6.01 -26.46 -0.16 -2.03 16 21 C -0.12 -1.88 6.00 -26.54 -0.16 -2.04 16 22 C -0.10 -2.00 3.74 -28.18 -0.11 -2.10 16 23 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 24 H 0.04 0.86 7.94 -51.93 -0.41 0.45 16 25 H 0.06 1.43 3.82 -51.93 -0.20 1.24 16 26 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 27 H 0.08 1.47 6.98 -51.92 -0.36 1.11 16 28 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 29 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.11 2.02 7.58 -52.49 -0.40 1.62 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.14 3.17 4.29 -51.93 -0.22 2.95 16 41 H 0.06 1.16 7.47 -51.93 -0.39 0.77 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -27.58 326.58 -9.32 -36.89 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.59 Total: 6.50 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -3.00 Total: -13.84 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.28 Total: -35.88 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.58 -9.32 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275720494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.356 kcal (2) G-P(sol) polarization free energy of solvation -27.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds