Wall clock time and date at job start Mon Mar 30 2020 00:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00112 * 2 1 4 4 H 1.48498 * 109.47181 * 270.00115 * 3 2 1 5 5 H 1.48496 * 109.46845 * 30.00078 * 3 2 1 6 6 H 1.48500 * 109.46978 * 149.99976 * 3 2 1 7 7 C 1.37884 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00011 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47150 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99906 * 249.83235 * 10 9 7 12 12 C 1.53009 * 109.47168 * 274.64818 * 11 10 9 13 13 C 1.52994 * 117.50235 * 243.49381 * 12 11 10 14 14 C 1.52991 * 60.00319 * 252.51711 * 13 12 11 15 15 C 1.34772 * 119.99790 * 69.83199 * 10 9 7 16 16 O 1.21618 * 119.99942 * 183.45507 * 15 10 9 17 17 C 1.47105 * 120.00127 * 3.45751 * 15 10 9 18 18 C 1.31552 * 118.10377 * 213.32099 * 17 15 10 19 19 C 1.50098 * 123.79070 * 180.68623 * 18 17 15 20 20 C 1.53153 * 110.04725 * 342.38704 * 19 18 17 21 21 C 1.53367 * 108.37791 * 50.08515 * 20 19 18 22 22 C 1.50087 * 118.10434 * 33.30195 * 17 15 10 23 23 H 0.96997 * 119.99784 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47108 * 60.00158 * 9 7 2 25 25 H 1.09005 * 109.47331 * 300.00478 * 9 7 2 26 26 H 1.08996 * 109.47620 * 34.65469 * 11 10 9 27 27 H 1.09007 * 109.46855 * 154.65445 * 11 10 9 28 28 H 1.09003 * 115.54408 * 29.20868 * 12 11 10 29 29 H 1.09006 * 117.49686 * 0.02562 * 13 12 11 30 30 H 1.08995 * 117.49663 * 145.01741 * 13 12 11 31 31 H 1.09008 * 117.49363 * 252.51563 * 14 13 12 32 32 H 1.08996 * 117.50584 * 107.48898 * 14 13 12 33 33 H 1.07998 * 118.10722 * 0.39957 * 18 17 15 34 34 H 1.08999 * 109.36416 * 102.77392 * 19 18 17 35 35 H 1.08999 * 109.35407 * 222.37140 * 19 18 17 36 36 H 1.08994 * 109.81473 * 290.34328 * 20 19 18 37 37 H 1.09001 * 109.73665 * 169.77342 * 20 19 18 38 38 H 1.09003 * 109.62620 * 172.11470 * 21 20 19 39 39 H 1.09005 * 109.62968 * 51.52889 * 21 20 19 40 40 H 1.09001 * 109.36016 * 283.03595 * 22 17 15 41 41 H 1.09004 * 109.36469 * 42.75893 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.3465 -4.4536 -1.1914 12 6 1.2895 -5.5596 -1.1652 13 6 1.7819 -7.0055 -1.0770 14 6 1.1953 -6.4758 -2.3870 15 6 2.9468 -3.8633 1.0951 16 8 3.7815 -4.7475 1.0741 17 6 2.7488 -3.0675 2.3163 18 6 3.7961 -2.8256 3.0749 19 6 3.7373 -2.0421 4.3538 20 6 2.4430 -1.2253 4.4101 21 6 1.2681 -2.1586 4.0929 22 6 1.3639 -2.5781 2.6246 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.2126 -3.8441 -2.0850 27 1 3.3404 -4.9012 -1.2025 28 1 0.3618 -5.3111 -0.6497 29 1 2.8589 -7.1689 -1.0372 30 1 1.1782 -7.7085 -0.5031 31 1 0.2056 -6.8304 -2.6749 32 1 1.8863 -6.2907 -3.2094 33 1 4.7526 -3.2172 2.7617 34 1 3.7728 -2.7283 5.2000 35 1 4.5912 -1.3664 4.4030 36 1 2.4812 -0.4215 3.6750 37 1 2.3169 -0.8038 5.4074 38 1 0.3277 -1.6343 4.2634 39 1 1.3193 -3.0414 4.7301 40 1 1.1328 -1.7234 1.9887 41 1 0.6471 -3.3763 2.4314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275720494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:40 Heat of formation + Delta-G solvation = -10.366210 kcal Electronic energy + Delta-G solvation = -20870.730585 eV Core-core repulsion = 17944.033444 eV Total energy + Delta-G solvation = -2926.697141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28292 -38.81306 -38.02788 -36.57316 -34.41993 -32.20382 -31.65772 -29.51796 -27.81248 -25.33408 -24.04738 -23.58424 -23.20927 -21.73619 -20.54619 -18.97850 -18.56733 -17.54806 -17.45986 -16.42894 -16.17046 -15.91426 -15.50275 -15.06711 -14.84456 -14.65394 -14.36348 -13.97546 -13.88681 -13.58990 -13.54895 -13.13077 -12.87859 -12.83792 -12.58947 -12.37450 -12.27157 -12.08812 -11.77220 -11.54008 -11.43648 -11.36735 -11.05386 -10.87022 -10.67644 -10.38587 -9.73344 -9.38459 -8.17407 -6.28561 0.74861 1.39311 1.42995 1.51410 2.15005 2.41159 2.48366 2.92357 3.13098 3.71404 3.81247 3.91663 3.98022 4.10575 4.14893 4.28731 4.38897 4.44295 4.49598 4.64633 4.73295 4.76123 4.77810 4.82173 4.92658 4.98192 4.99698 5.04914 5.18295 5.23182 5.24466 5.28082 5.34752 5.40486 5.60303 5.65025 5.74289 5.83489 5.96661 6.14390 6.54788 6.85165 7.31166 7.43453 8.87899 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.008592 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.090156 B = 3257.933170 C = 4477.800201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.034 3.966 3 Si 0.942 3.058 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.041 0.959 9 C 0.226 3.774 10 N -0.592 5.592 11 C 0.144 3.856 12 C -0.185 4.185 13 C -0.174 4.174 14 C -0.152 4.152 15 C 0.543 3.457 16 O -0.603 6.603 17 C -0.145 4.145 18 C -0.106 4.106 19 C -0.081 4.081 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.095 4.095 23 H 0.268 0.732 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -5.226 4.628 7.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.167 4.167 3 Si 0.768 3.232 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.059 0.941 9 C 0.106 3.894 10 N -0.321 5.321 11 C 0.021 3.979 12 C -0.205 4.205 13 C -0.211 4.211 14 C -0.189 4.189 15 C 0.335 3.665 16 O -0.488 6.488 17 C -0.148 4.148 18 C -0.126 4.126 19 C -0.117 4.117 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.131 4.131 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.505 -5.540 4.570 7.338 hybrid contribution 0.362 0.922 -0.590 1.153 sum 1.867 -4.618 3.980 6.376 Atomic orbital electron populations 1.69984 1.06715 1.28001 1.50339 1.25412 0.95437 1.01358 0.94528 0.85798 0.79009 0.80248 0.78186 1.20604 1.20065 1.19787 1.21427 0.92578 0.91482 1.51460 0.94089 1.19961 0.88067 0.82471 0.98911 1.48136 1.40260 1.30856 1.12810 1.20982 0.97977 0.91326 0.87631 1.22628 1.00478 0.92127 1.05236 1.23002 1.01026 0.95609 1.01438 1.23025 1.03396 1.01385 0.91112 1.19050 0.79713 0.82858 0.84894 1.90622 1.37057 1.35750 1.85364 1.20679 0.98217 1.01367 0.94545 1.22762 0.96819 0.96495 0.96509 1.20546 0.98967 0.98205 0.94018 1.21626 0.94181 0.97653 1.02201 1.21595 0.98993 0.99709 0.94706 1.20933 0.91535 1.01920 0.98718 0.92283 0.96471 0.92046 0.90650 0.91378 0.88914 0.89491 0.88181 0.86991 0.87775 0.88425 0.88236 0.89438 0.93518 0.89070 0.91172 0.91142 0.87305 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.38 13.29 21.45 0.28 -48.10 16 2 C 0.03 1.73 5.16 84.66 0.44 2.16 16 3 Si 0.94 41.46 29.54 68.60 2.03 43.49 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.53 -27.53 6.99 25.60 0.18 -27.36 16 8 H 0.04 2.24 7.81 -2.91 -0.02 2.22 16 9 C 0.23 10.90 4.84 85.63 0.41 11.32 16 10 N -0.59 -26.58 2.56 -830.43 -2.13 -28.71 16 11 C 0.14 5.63 5.69 86.38 0.49 6.12 16 12 C -0.19 -6.17 6.01 -10.79 -0.06 -6.23 16 13 C -0.17 -4.97 10.18 30.59 0.31 -4.66 16 14 C -0.15 -3.83 10.25 30.59 0.31 -3.51 16 15 C 0.54 25.06 7.09 86.57 0.61 25.68 16 16 O -0.60 -29.72 15.93 -4.09 -0.07 -29.79 16 17 C -0.15 -6.01 4.83 -18.29 -0.09 -6.10 16 18 C -0.11 -3.86 9.35 24.93 0.23 -3.63 16 19 C -0.08 -2.19 6.11 29.71 0.18 -2.01 16 20 C -0.12 -3.37 6.01 30.77 0.18 -3.18 16 21 C -0.11 -3.45 6.00 30.72 0.18 -3.27 16 22 C -0.09 -3.71 3.74 29.66 0.11 -3.60 16 23 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 24 H 0.02 0.88 7.94 -2.39 -0.02 0.86 16 25 H 0.06 3.00 3.82 -2.38 -0.01 2.99 16 26 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 27 H 0.07 2.73 6.98 -2.38 -0.02 2.72 16 28 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 29 H 0.09 2.61 8.03 -2.38 -0.02 2.59 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 31 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.10 3.69 7.58 -2.91 -0.02 3.67 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 1.91 8.12 -2.38 -0.02 1.90 16 40 H 0.11 5.01 4.29 -2.39 -0.01 5.00 16 41 H 0.05 2.06 7.47 -2.38 -0.02 2.04 16 Total: -1.00 -59.88 326.58 4.62 -55.26 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 1.00 Total: 26.12 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 3.50 Total: -18.27 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.84 Total: -76.81 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.07 Total: -29.79 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -59.88 4.62 -55.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275720494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.897 kcal (2) G-P(sol) polarization free energy of solvation -59.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds