Wall clock time and date at job start Mon Mar 30 2020 00:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46866 * 123.37059 * 3 2 1 5 5 C 1.50702 * 109.47245 * 299.99874 * 4 3 2 6 6 O 1.21283 * 120.00262 * 240.00295 * 5 4 3 7 7 N 1.34777 * 119.99928 * 59.72201 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.50694 * 109.47460 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00338 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10 18 18 C 1.52996 * 109.47253 * 59.99686 * 4 3 2 19 19 C 1.53000 * 109.47253 * 179.97438 * 18 4 3 20 20 C 1.52996 * 109.47166 * 300.00041 * 19 18 4 21 21 C 1.53002 * 109.47255 * 60.00105 * 20 19 18 22 22 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 23 23 H 4.44649 * 5.63264 * 180.02562 * 4 1 2 24 24 H 1.08996 * 109.47162 * 3.37607 * 3 2 1 25 25 H 1.08994 * 109.47016 * 243.36903 * 3 2 1 26 26 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 27 27 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 28 28 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 29 29 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 30 30 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 31 31 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.47551 * 299.99874 * 18 4 3 33 33 H 1.09003 * 109.46851 * 60.00175 * 18 4 3 34 34 H 1.09004 * 109.47131 * 180.02562 * 19 18 4 35 35 H 1.09003 * 109.47049 * 60.00296 * 19 18 4 36 36 H 1.09003 * 109.47345 * 300.00074 * 20 19 18 37 37 H 1.09000 * 109.47665 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.47738 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.46969 * 59.99739 * 21 20 19 40 40 H 1.08994 * 109.47089 * 300.00072 * 22 4 3 41 41 H 1.09004 * 109.47066 * 59.99996 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7943 -1.2047 5 6 2.6536 0.1573 -2.4748 6 8 3.4419 -0.2556 -3.2989 7 7 1.3286 0.0412 -2.6924 8 6 0.8405 -0.5835 -3.9243 9 6 -0.6895 -0.5888 -3.9221 10 6 -1.1915 -1.2320 -5.1891 11 1 -0.4896 -1.5999 -5.9228 12 6 -2.5470 -1.3499 -5.4122 13 7 -2.9851 -1.9117 -6.5176 14 14 -3.7611 -0.7117 -4.1441 15 1 -4.0875 0.7063 -4.4409 16 1 -5.0021 -1.5260 -4.1933 17 1 -3.1592 -0.8081 -2.7900 18 6 2.6449 2.2341 -1.1199 19 6 3.1550 3.0279 -2.3243 20 6 4.6850 3.0287 -2.3237 21 6 5.1958 1.5889 -2.4085 22 6 4.6856 0.7956 -1.2044 23 1 -1.0501 0.0000 0.0004 24 1 3.0098 -1.0250 -0.0605 25 1 3.0091 0.4614 0.9186 26 1 0.6980 0.3714 -2.0334 27 1 1.2003 -0.0196 -4.7849 28 1 1.2076 -1.6082 -3.9822 29 1 -1.0497 -1.1524 -3.0615 30 1 -1.0562 0.4361 -3.8646 31 1 -3.9387 -1.9950 -6.6743 32 1 1.5549 2.2336 -1.1199 33 1 3.0081 2.6949 -0.2013 34 1 2.7915 4.0538 -2.2637 35 1 2.7922 2.5672 -3.2432 36 1 5.0478 3.4893 -1.4048 37 1 5.0485 3.5938 -3.1819 38 1 6.2858 1.5893 -2.4076 39 1 4.8330 1.1283 -3.3274 40 1 5.0483 1.2566 -0.2858 41 1 5.0498 -0.2300 -1.2646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276730049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:52 Heat of formation + Delta-G solvation = -32.096750 kcal Electronic energy + Delta-G solvation = -20595.376661 eV Core-core repulsion = 17667.737214 eV Total energy + Delta-G solvation = -2927.639448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91997 -38.43722 -36.83868 -35.64741 -34.60322 -32.48762 -32.10702 -31.34254 -27.78896 -27.06382 -24.00358 -23.60718 -22.57311 -21.85782 -20.32711 -19.01817 -18.94797 -17.46672 -17.07063 -16.46458 -16.25334 -16.05131 -15.43607 -15.23261 -15.15490 -14.73593 -14.62596 -14.52340 -14.03054 -13.45773 -13.28072 -13.12926 -13.07953 -12.94461 -12.85176 -12.24328 -12.21251 -11.94531 -11.79256 -11.61546 -11.56615 -11.44634 -11.16083 -10.86491 -10.85216 -10.81762 -10.43478 -9.96577 -8.32935 -6.40694 1.35502 1.38698 1.50085 1.60050 1.87724 1.90341 2.30845 2.34363 3.01608 3.35462 3.62987 3.72703 3.81721 4.02420 4.23064 4.30751 4.31825 4.36159 4.45603 4.53314 4.63478 4.68583 4.71341 4.77600 4.82187 4.93846 5.04834 5.10968 5.11683 5.16317 5.27967 5.29569 5.33717 5.37087 5.39580 5.45171 5.60446 5.72990 6.19014 6.60430 6.64141 6.68650 7.23852 7.32578 8.83920 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.005349 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.685200 B = 5233.024588 C = 5658.826288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.204 4.204 3 C -0.002 4.002 4 C -0.064 4.064 5 C 0.511 3.489 6 O -0.579 6.579 7 N -0.722 5.722 8 C 0.142 3.858 9 C -0.009 4.009 10 C -0.540 4.540 11 H 0.027 0.973 12 C 0.006 3.994 13 N -0.949 5.949 14 Si 0.956 3.044 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.235 1.235 18 C -0.103 4.103 19 C -0.127 4.127 20 C -0.112 4.112 21 C -0.138 4.138 22 C -0.088 4.088 23 H 0.234 0.766 24 H 0.090 0.910 25 H 0.138 0.862 26 H 0.407 0.593 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.269 0.731 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.243 11.267 19.929 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.204 4.204 3 C -0.038 4.038 4 C -0.068 4.068 5 C 0.299 3.701 6 O -0.460 6.460 7 N -0.377 5.377 8 C 0.018 3.982 9 C -0.046 4.046 10 C -0.579 4.579 11 H 0.045 0.955 12 C -0.191 4.191 13 N -0.589 5.589 14 Si 0.778 3.222 15 H -0.189 1.189 16 H -0.209 1.209 17 H -0.157 1.157 18 C -0.140 4.140 19 C -0.165 4.165 20 C -0.149 4.149 21 C -0.175 4.175 22 C -0.126 4.126 23 H 0.250 0.750 24 H 0.108 0.892 25 H 0.155 0.845 26 H 0.247 0.753 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.643 10.921 19.239 25.481 hybrid contribution -1.338 -0.290 -0.566 1.481 sum 11.306 10.631 18.674 24.280 Atomic orbital electron populations 1.25589 0.96920 1.00228 0.99703 1.23354 0.95196 1.01204 1.00681 1.18953 0.84223 1.01823 0.98842 1.20960 0.98467 0.96818 0.90505 1.21288 0.81747 0.78131 0.88967 1.90592 1.55868 1.50747 1.48780 1.46653 1.07852 1.60877 1.22302 1.21003 0.95348 0.96018 0.85850 1.19599 0.91445 0.97157 0.96426 1.21217 0.92643 1.39703 1.04289 0.95455 1.26076 1.00605 0.94617 0.97824 1.70073 1.15344 1.45613 1.27880 0.85584 0.77474 0.78687 0.80497 1.18909 1.20932 1.15738 1.21667 1.00387 0.91593 1.00400 1.21604 0.97053 1.00651 0.97173 1.21514 0.94378 0.96325 1.02724 1.21758 1.00583 0.95824 0.99340 1.21382 0.90180 1.01058 0.99947 0.74961 0.89154 0.84453 0.75269 0.94267 0.94157 0.94739 0.95147 0.92246 0.92135 0.87143 0.90134 0.95630 0.89367 0.92531 0.91072 0.93054 0.87469 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.51 17.62 74.32 1.31 -3.20 16 2 C -0.20 -4.45 9.75 31.13 0.30 -4.15 16 3 C 0.00 -0.04 4.78 28.79 0.14 0.10 16 4 C -0.06 -1.41 0.50 -52.93 -0.03 -1.43 16 5 C 0.51 17.10 4.93 87.66 0.43 17.54 16 6 O -0.58 -23.89 13.66 -3.04 -0.04 -23.93 16 7 N -0.72 -25.67 4.90 -463.06 -2.27 -27.94 16 8 C 0.14 6.30 5.61 86.38 0.48 6.79 16 9 C -0.01 -0.40 4.15 29.85 0.12 -0.28 16 10 C -0.54 -31.79 9.66 25.60 0.25 -31.54 16 11 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 12 C 0.01 0.35 5.47 84.66 0.46 0.82 16 13 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 14 Si 0.96 42.65 27.47 68.60 1.88 44.53 16 15 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.23 -9.21 6.54 99.48 0.65 -8.56 16 18 C -0.10 -1.90 4.38 30.59 0.13 -1.77 16 19 C -0.13 -2.71 5.70 30.59 0.17 -2.53 16 20 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 21 C -0.14 -3.10 5.63 30.58 0.17 -2.93 16 22 C -0.09 -1.68 4.37 30.58 0.13 -1.55 16 23 H 0.23 4.06 7.80 -4.41 -0.03 4.02 16 24 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.41 12.65 4.10 -92.71 -0.38 12.27 16 27 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 1.53 7.20 -2.39 -0.02 1.52 16 30 H 0.03 1.34 7.57 -2.38 -0.02 1.33 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.06 1.22 6.68 -2.39 -0.02 1.20 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.02 0.73 7.22 -2.39 -0.02 0.72 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.63 5.51 -2.39 -0.01 1.62 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.27 8.10 -2.38 -0.02 1.25 16 Total: -1.00 -73.80 321.14 4.71 -69.10 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.56 Total: 23.89 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 4.27 Total: -26.04 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.97 Total: -87.55 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.93 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -73.80 4.71 -69.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276730049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.003 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds