Wall clock time and date at job start Mon Mar 30 2020 00:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46869 * 248.10585 * 3 2 1 5 5 C 1.37094 * 120.00242 * 266.21904 * 4 3 2 6 6 H 1.08003 * 120.00062 * 43.51893 * 5 4 3 7 7 C 1.38949 * 120.00519 * 223.52235 * 5 4 3 8 8 N 1.31415 * 119.99361 * 21.59119 * 7 5 4 9 9 Si 1.86796 * 120.00355 * 201.59218 * 7 5 4 10 10 H 1.48500 * 109.47239 * 59.99780 * 9 7 5 11 11 H 1.48500 * 109.46912 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47117 * 299.99670 * 9 7 5 13 13 C 1.34773 * 119.99911 * 86.21939 * 4 3 2 14 14 O 1.21298 * 120.00024 * 184.47014 * 13 4 3 15 15 C 1.50700 * 120.00255 * 4.46703 * 13 4 3 16 16 H 1.09005 * 109.47337 * 317.02429 * 15 13 4 17 17 C 1.53008 * 109.47048 * 77.01712 * 15 13 4 18 18 C 1.52989 * 109.47391 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.47378 * 300.00298 * 18 17 15 20 20 C 1.53000 * 109.47314 * 59.99668 * 19 18 17 21 21 C 1.52998 * 109.47482 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46787 * 60.00082 * 20 19 18 23 23 C 1.53000 * 109.47517 * 197.01683 * 15 13 4 24 24 H 4.40641 * 5.51324 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.46921 * 128.11130 * 3 2 1 26 26 H 1.08995 * 109.47107 * 8.10405 * 3 2 1 27 27 H 0.97008 * 119.99721 * 184.93173 * 8 7 5 28 28 H 1.09005 * 109.46466 * 60.00184 * 17 15 13 29 29 H 1.09004 * 109.47231 * 300.00609 * 17 15 13 30 30 H 1.09001 * 109.47641 * 180.02562 * 18 17 15 31 31 H 1.08999 * 109.47379 * 60.00067 * 18 17 15 32 32 H 1.09005 * 109.47072 * 300.00372 * 19 18 17 33 33 H 1.08999 * 109.47641 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.47334 * 180.02562 * 21 20 19 35 35 H 1.09005 * 109.46720 * 299.99990 * 21 20 19 36 36 H 1.09001 * 109.47098 * 59.99712 * 21 20 19 37 37 H 1.09001 * 109.47600 * 300.00195 * 22 20 19 38 38 H 1.08997 * 109.47450 * 60.00313 * 22 20 19 39 39 H 1.09007 * 109.47182 * 180.02562 * 22 20 19 40 40 H 1.09007 * 109.46705 * 60.00316 * 23 15 13 41 41 H 1.08999 * 109.47031 * 300.00518 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.5159 1.2816 5 6 3.4358 1.8466 1.4154 6 1 2.7739 2.5944 1.0040 7 6 4.5931 2.2333 2.0801 8 7 5.5917 1.3884 2.2061 9 14 4.7293 3.9538 2.7945 10 1 3.6537 4.1601 3.7973 11 1 6.0528 4.1148 3.4485 12 1 4.5897 4.9543 1.7059 13 6 3.2865 -0.3182 2.3292 14 8 3.6125 0.1211 3.4118 15 6 3.0518 -1.7966 2.1557 16 1 2.1549 -1.9543 1.5566 17 6 4.2544 -2.4243 1.4479 18 6 4.0160 -3.9251 1.2711 19 6 3.8337 -4.5777 2.6430 20 6 2.6312 -3.9501 3.3507 21 6 2.4493 -4.6023 4.7227 22 6 1.3723 -4.1709 2.5096 23 6 2.8700 -2.4488 3.5277 24 1 -1.0500 0.0001 -0.0003 25 1 3.0091 0.6351 -0.8086 26 1 3.0098 -1.0165 -0.1449 27 1 6.3702 1.6325 2.7309 28 1 5.1514 -2.2666 2.0470 29 1 4.3840 -1.9597 0.4704 30 1 4.8729 -4.3724 0.7674 31 1 3.1191 -4.0824 0.6720 32 1 4.7306 -4.4204 3.2422 33 1 3.6643 -5.6471 2.5171 34 1 1.5923 -4.1555 5.2267 35 1 2.2795 -5.6717 4.5970 36 1 3.3463 -4.4447 5.3216 37 1 1.5020 -3.7060 1.5323 38 1 1.2023 -5.2401 2.3836 39 1 0.5155 -3.7233 3.0136 40 1 2.0132 -2.0016 4.0318 41 1 3.7670 -2.2911 4.1266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281020557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:08 Heat of formation + Delta-G solvation = 2.944230 kcal Electronic energy + Delta-G solvation = -21172.911076 eV Core-core repulsion = 18246.791120 eV Total energy + Delta-G solvation = -2926.119957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71967 -37.66392 -34.66402 -33.04779 -32.44552 -31.15043 -30.29797 -27.14901 -26.47362 -25.97264 -24.79352 -22.45998 -21.10614 -19.12392 -18.00164 -17.80279 -16.54650 -15.62232 -15.03131 -14.78804 -14.45611 -14.09866 -13.90644 -13.65413 -13.34734 -13.12835 -12.55392 -12.41300 -12.17603 -11.88580 -11.67487 -11.59145 -11.28824 -11.13948 -11.11413 -10.84553 -10.61747 -10.57608 -10.47402 -10.26476 -10.07009 -9.79610 -9.74200 -9.63716 -9.46601 -8.68551 -7.99699 -7.20007 -6.11869 -3.85201 3.28892 3.34518 3.39720 3.41442 3.48918 4.20387 4.43711 4.82907 4.93424 5.01159 5.05444 5.24681 5.33227 5.44755 5.55330 5.64383 5.71813 5.79297 5.83954 5.92823 5.98011 5.98832 6.00912 6.08713 6.18466 6.20555 6.26730 6.32248 6.33980 6.41942 6.52099 6.56184 6.63089 6.68604 6.74405 6.87897 7.00867 7.66140 8.16907 8.29594 9.08227 9.19254 9.66815 10.30679 10.97172 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.007178 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.437248 B = 3900.065348 C = 4480.705456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.170 4.170 3 C 0.199 3.801 4 N -0.453 5.453 5 C -0.350 4.350 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.836 5.836 9 Si 0.907 3.093 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.495 3.505 14 O -0.539 6.539 15 C -0.103 4.103 16 H 0.076 0.924 17 C -0.104 4.104 18 C -0.119 4.119 19 C -0.106 4.106 20 C -0.067 4.067 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.082 4.082 24 H 0.209 0.791 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.264 0.736 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.223 -11.658 -2.483 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.172 4.172 3 C 0.075 3.925 4 N -0.175 5.175 5 C -0.477 4.477 6 H 0.093 0.907 7 C -0.132 4.132 8 N -0.470 5.470 9 Si 0.734 3.266 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.283 3.717 14 O -0.417 6.417 15 C -0.125 4.125 16 H 0.094 0.906 17 C -0.142 4.142 18 C -0.157 4.157 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.196 4.196 22 C -0.200 4.200 23 C -0.120 4.120 24 H 0.226 0.774 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.783 -11.419 -1.888 12.524 hybrid contribution -0.141 0.866 0.312 0.931 sum -4.925 -10.554 -1.577 11.752 Atomic orbital electron populations 1.24706 0.95721 1.03259 1.01987 1.24383 0.95529 0.98342 0.98900 1.18678 0.82707 1.00125 0.91007 1.43227 1.60166 1.08202 1.05933 1.18910 1.05115 0.81049 1.42590 0.90742 1.25136 0.93352 0.98213 0.96537 1.69878 1.04932 1.37321 1.34857 0.86369 0.77334 0.83366 0.79531 1.20061 1.21241 1.20347 1.19942 0.80663 0.86730 0.84404 1.90491 1.47978 1.77488 1.25744 1.21299 0.98904 0.94541 0.97736 0.90584 1.21451 0.98147 0.93925 1.00671 1.21604 1.01131 0.96003 0.96916 1.21572 0.97840 0.98474 0.96418 1.20579 0.95182 0.95954 0.94945 1.21837 1.01622 0.99657 0.96469 1.21958 0.96989 1.00628 1.00395 1.21329 1.02383 0.92084 0.96222 0.77409 0.88892 0.89950 0.92545 0.91257 0.91673 0.92342 0.92012 0.92051 0.92645 0.92846 0.93171 0.92747 0.91979 0.93320 0.93002 0.92328 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.98 19.25 29.55 0.57 -3.41 16 2 C -0.17 -3.24 13.03 -37.12 -0.48 -3.73 16 3 C 0.20 4.02 5.48 -6.83 -0.04 3.98 16 4 N -0.45 -11.46 2.47 -117.94 -0.29 -11.76 16 5 C -0.35 -9.81 9.13 -14.94 -0.14 -9.95 16 6 H 0.07 2.05 7.92 -52.48 -0.42 1.63 16 7 C 0.08 2.21 4.28 -17.47 -0.07 2.14 16 8 N -0.84 -24.59 12.08 55.50 0.67 -23.92 16 9 Si 0.91 22.34 29.61 -169.99 -5.03 17.31 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.49 12.55 6.04 -10.99 -0.07 12.49 16 14 O -0.54 -15.97 14.09 5.54 0.08 -15.89 16 15 C -0.10 -2.00 1.40 -91.77 -0.13 -2.13 16 16 H 0.08 1.39 5.03 -51.93 -0.26 1.13 16 17 C -0.10 -1.83 4.92 -26.73 -0.13 -1.97 16 18 C -0.12 -1.62 5.65 -26.73 -0.15 -1.78 16 19 C -0.11 -1.38 4.73 -26.73 -0.13 -1.51 16 20 C -0.07 -0.92 0.77 -154.48 -0.12 -1.04 16 21 C -0.14 -1.71 8.47 37.16 0.31 -1.40 16 22 C -0.14 -1.82 7.78 37.16 0.29 -1.53 16 23 C -0.08 -1.49 3.45 -26.70 -0.09 -1.58 16 24 H 0.21 2.61 7.80 -54.09 -0.42 2.18 16 25 H 0.09 1.82 8.01 -51.93 -0.42 1.40 16 26 H 0.08 1.48 4.82 -51.93 -0.25 1.23 16 27 H 0.26 7.53 8.32 -40.82 -0.34 7.19 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.06 1.16 6.28 -51.93 -0.33 0.83 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.82 4.81 -51.93 -0.25 0.57 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.41 7.92 -51.93 -0.41 0.99 16 LS Contribution 322.71 15.07 4.86 4.86 Total: -1.00 -32.37 322.71 -6.54 -38.91 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.45 Total: 1.90 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.37 Total: -11.41 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.38 Total: -35.67 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.37 -6.54 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281020557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.850 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds