Wall clock time and date at job start Mon Mar 30 2020 00:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47238 * 207.81914 * 3 2 1 5 5 C 1.37097 * 119.99678 * 264.37597 * 4 3 2 6 6 H 1.08005 * 120.00089 * 189.86769 * 5 4 3 7 7 C 1.38954 * 120.00412 * 9.86482 * 5 4 3 8 8 N 1.31406 * 119.99836 * 28.04237 * 7 5 4 9 9 Si 1.86800 * 120.00296 * 208.04042 * 7 5 4 10 10 H 1.48496 * 109.46999 * 94.98985 * 9 7 5 11 11 H 1.48492 * 109.47168 * 214.99263 * 9 7 5 12 12 H 1.48506 * 109.46967 * 334.99133 * 9 7 5 13 13 C 1.34772 * 119.99816 * 84.37279 * 4 3 2 14 14 O 1.21293 * 120.00223 * 354.60639 * 13 4 3 15 15 C 1.50704 * 119.99524 * 174.60344 * 13 4 3 16 16 C 1.53000 * 109.47043 * 60.00017 * 15 13 4 17 17 C 1.52995 * 109.47240 * 299.99812 * 15 13 4 18 18 C 1.53005 * 109.46900 * 179.97438 * 15 13 4 19 19 C 1.54266 * 110.48396 * 179.97438 * 18 15 13 20 20 C 1.53882 * 106.63733 * 217.73431 * 19 18 15 21 21 C 1.54265 * 106.59849 * 359.97438 * 20 19 18 22 22 C 1.54891 * 104.19537 * 23.61373 * 21 20 19 23 23 H 4.40643 * 5.51460 * 179.97438 * 4 1 2 24 24 H 1.09007 * 109.46748 * 87.82020 * 3 2 1 25 25 H 1.08996 * 109.47344 * 327.82522 * 3 2 1 26 26 H 0.96995 * 120.00409 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.46498 * 188.86983 * 16 15 13 28 28 H 1.08994 * 109.46933 * 308.86744 * 16 15 13 29 29 H 1.09000 * 109.46980 * 68.87575 * 16 15 13 30 30 H 1.09000 * 109.47557 * 306.52495 * 17 15 13 31 31 H 1.09004 * 109.47492 * 66.52324 * 17 15 13 32 32 H 1.09004 * 109.47431 * 186.52596 * 17 15 13 33 33 H 1.08999 * 110.53536 * 302.61358 * 18 15 13 34 34 H 1.09002 * 110.02837 * 98.43064 * 19 18 15 35 35 H 1.08991 * 110.03639 * 337.04377 * 19 18 15 36 36 H 1.09001 * 110.02855 * 119.26420 * 20 19 18 37 37 H 1.09000 * 110.03142 * 240.64243 * 20 19 18 38 38 H 1.09001 * 110.47971 * 142.28349 * 21 20 19 39 39 H 1.08993 * 110.48554 * 264.92984 * 21 20 19 40 40 H 1.08991 * 110.76135 * 80.37034 * 22 21 20 41 41 H 1.09000 * 110.75445 * 203.55838 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2225 0.6446 5 6 3.4715 2.3113 -0.1170 6 1 3.9782 3.1508 0.3358 7 6 3.1620 2.3348 -1.4714 8 7 2.1283 1.6595 -1.9210 9 14 4.2152 3.3266 -2.6532 10 1 5.2395 2.4424 -3.2648 11 1 3.3561 3.9004 -3.7197 12 1 4.8874 4.4255 -1.9143 13 6 3.2505 1.2760 1.9862 14 8 2.8606 0.3505 2.6663 15 6 3.8656 2.4859 2.6412 16 6 3.0437 3.7282 2.2917 17 6 5.2993 2.6647 2.1381 18 6 3.8775 2.2933 4.1590 19 6 4.5039 3.5199 4.8540 20 6 5.3300 2.9825 6.0358 21 6 5.1767 1.4476 6.0189 22 6 4.8095 1.1187 4.5505 23 1 -1.0502 -0.0002 -0.0003 24 1 3.0093 -0.0383 -1.0270 25 1 3.0098 -0.8690 0.5472 26 1 1.9119 1.6761 -2.8663 27 1 3.5712 4.6198 2.6307 28 1 2.9021 3.7782 1.2122 29 1 2.0726 3.6715 2.7835 30 1 5.8535 1.7373 2.2826 31 1 5.2836 2.9169 1.0777 32 1 5.7826 3.4673 2.6953 33 1 2.8677 2.1183 4.5302 34 1 3.7196 4.1837 5.2178 35 1 5.1511 4.0533 4.1580 36 1 6.3783 3.2546 5.9128 37 1 4.9473 3.3864 6.9731 38 1 6.1158 0.9675 6.2939 39 1 4.3770 1.1367 6.6910 40 1 5.7003 1.1076 3.9227 41 1 4.2828 0.1665 4.4881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281464432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:35 Heat of formation + Delta-G solvation = 28.797883 kcal Electronic energy + Delta-G solvation = -21278.814246 eV Core-core repulsion = 18353.815387 eV Total energy + Delta-G solvation = -2924.998858 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81526 -37.47719 -35.01256 -33.86071 -31.89816 -31.12267 -28.40511 -27.54779 -26.56839 -26.08300 -24.94702 -22.18205 -20.15356 -19.49109 -18.27845 -17.72020 -16.72274 -15.71208 -15.27769 -14.70702 -14.28224 -14.12325 -14.06220 -13.40203 -13.34545 -12.91337 -12.73506 -12.13700 -11.90471 -11.76994 -11.44458 -11.33921 -11.19504 -11.04224 -10.82468 -10.74219 -10.56462 -10.48848 -10.40837 -10.15326 -9.98992 -9.72029 -9.43377 -9.26231 -9.16300 -8.70449 -8.14858 -7.89389 -6.43786 -3.85889 3.07929 3.20470 3.21495 3.77401 3.98184 4.13641 4.26787 4.81362 4.97194 5.01957 5.05933 5.22989 5.59789 5.66231 5.72614 5.78700 5.86598 5.95927 6.04382 6.07144 6.09956 6.16638 6.23671 6.29322 6.38310 6.46575 6.56317 6.60999 6.64710 6.67283 6.78780 6.81814 6.92549 6.98820 7.09405 7.15294 7.20217 7.47289 7.68253 8.32058 8.97309 9.04770 9.50527 9.91591 10.57820 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.007412 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.924206 B = 3776.748245 C = 4584.958358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.101 4.101 3 C 0.237 3.763 4 N -0.438 5.438 5 C -0.356 4.356 6 H 0.127 0.873 7 C 0.038 3.962 8 N -0.843 5.843 9 Si 0.904 3.096 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.471 3.529 14 O -0.600 6.600 15 C -0.051 4.051 16 C -0.161 4.161 17 C -0.153 4.153 18 C -0.060 4.060 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.117 4.117 23 H 0.197 0.803 24 H 0.109 0.891 25 H 0.063 0.937 26 H 0.269 0.731 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 2.893 6.746 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.102 4.102 3 C 0.114 3.886 4 N -0.156 5.156 5 C -0.482 4.482 6 H 0.144 0.856 7 C -0.169 4.169 8 N -0.479 5.479 9 Si 0.730 3.270 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.260 3.740 14 O -0.486 6.486 15 C -0.054 4.054 16 C -0.218 4.218 17 C -0.209 4.209 18 C -0.079 4.079 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.154 4.154 23 H 0.214 0.786 24 H 0.126 0.874 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.116 2.405 6.863 8.891 hybrid contribution 0.031 0.643 -0.823 1.045 sum 5.147 3.048 6.039 8.500 Atomic orbital electron populations 1.24220 0.95369 1.03912 1.05902 1.23283 0.94464 0.96852 0.95629 1.18190 0.84080 0.87091 0.99211 1.43688 1.55701 1.12008 1.04196 1.20130 1.38202 0.98994 0.90888 0.85616 1.25223 0.95330 0.98057 0.98248 1.70225 1.20965 1.41164 1.15550 0.86276 0.80348 0.79877 0.80460 1.20297 1.21154 1.19234 1.20016 0.83298 0.88581 0.82072 1.90509 1.54722 1.40276 1.63064 1.20318 0.96175 0.94869 0.94070 1.22265 0.98524 0.95176 1.05826 1.22199 0.94498 1.01051 1.03193 1.21705 0.99214 0.93822 0.93134 1.22328 0.98949 0.98027 0.96853 1.22115 0.99642 0.96067 0.98139 1.22376 1.00429 0.95400 0.98153 1.22626 0.99146 0.99490 0.94177 0.78556 0.87350 0.91866 0.92047 0.93445 0.87964 0.93744 0.92913 0.89705 0.92952 0.91079 0.92567 0.91254 0.92449 0.92695 0.92512 0.92227 0.91713 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.37 19.25 29.55 0.57 -5.80 16 2 C -0.10 -2.52 11.90 -37.12 -0.44 -2.96 16 3 C 0.24 5.75 5.04 -6.83 -0.03 5.72 16 4 N -0.44 -10.64 2.60 -117.93 -0.31 -10.95 16 5 C -0.36 -8.42 6.69 -14.93 -0.10 -8.52 16 6 H 0.13 2.78 3.10 -52.48 -0.16 2.61 16 7 C 0.04 0.91 4.78 -17.47 -0.08 0.83 16 8 N -0.84 -21.31 9.69 55.50 0.54 -20.77 16 9 Si 0.90 18.52 29.64 -169.99 -5.04 13.48 16 10 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 13 C 0.47 11.06 6.17 -10.99 -0.07 10.99 16 14 O -0.60 -15.46 14.16 5.55 0.08 -15.38 16 15 C -0.05 -0.98 0.30 -155.66 -0.05 -1.03 16 16 C -0.16 -3.01 7.70 37.16 0.29 -2.72 16 17 C -0.15 -2.64 7.43 37.16 0.28 -2.37 16 18 C -0.06 -1.04 1.80 -88.92 -0.16 -1.20 16 19 C -0.12 -1.77 5.28 -25.61 -0.14 -1.90 16 20 C -0.12 -1.54 6.80 -25.61 -0.17 -1.72 16 21 C -0.13 -1.72 6.83 -25.07 -0.17 -1.89 16 22 C -0.12 -1.96 5.46 -24.70 -0.13 -2.10 16 23 H 0.20 3.73 7.80 -54.08 -0.42 3.30 16 24 H 0.11 2.65 6.10 -51.92 -0.32 2.34 16 25 H 0.06 1.48 7.68 -51.93 -0.40 1.08 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.05 0.75 7.38 -51.93 -0.38 0.37 16 28 H 0.10 2.13 4.52 -51.93 -0.23 1.90 16 29 H 0.04 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.05 0.91 6.38 -51.93 -0.33 0.58 16 31 H 0.08 1.56 5.06 -51.93 -0.26 1.30 16 32 H 0.05 0.78 5.93 -51.93 -0.31 0.47 16 33 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.96 5.42 -51.93 -0.28 0.68 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.07 5.78 -51.93 -0.30 0.77 16 41 H 0.08 1.49 7.00 -51.93 -0.36 1.12 16 LS Contribution 310.22 15.07 4.67 4.67 Total: -1.00 -27.57 310.22 -6.33 -33.90 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.85 Total: 9.72 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.42 Total: -14.68 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.23 Total: -31.72 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.08 Total: -15.38 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.04 Total: 13.48 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.57 -6.33 -33.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281464432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.694 kcal (2) G-P(sol) polarization free energy of solvation -27.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds