Wall clock time and date at job start Mon Mar 30 2020 00:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47529 * 312.25520 * 3 2 1 5 5 C 1.37095 * 119.99978 * 84.39383 * 4 3 2 6 6 H 1.08000 * 120.00123 * 36.28044 * 5 4 3 7 7 C 1.38944 * 120.00011 * 216.28159 * 5 4 3 8 8 N 1.31407 * 119.99989 * 5.73215 * 7 5 4 9 9 Si 1.86810 * 119.99985 * 185.72953 * 7 5 4 10 10 H 1.48504 * 109.46959 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.46970 * 300.00047 * 9 7 5 12 12 H 1.48496 * 109.46846 * 59.99933 * 9 7 5 13 13 C 1.34773 * 119.99660 * 264.39294 * 4 3 2 14 14 O 1.21292 * 119.99416 * 185.66704 * 13 4 3 15 15 C 1.50694 * 120.00263 * 5.67589 * 13 4 3 16 16 H 1.09000 * 109.46931 * 320.62741 * 15 13 4 17 17 C 1.52997 * 109.47659 * 80.63267 * 15 13 4 18 18 C 1.53005 * 109.47307 * 179.97438 * 17 15 13 19 19 C 1.52994 * 109.46955 * 300.00514 * 18 17 15 20 20 C 1.52994 * 109.47483 * 59.99995 * 19 18 17 21 21 C 1.52999 * 109.47104 * 299.99646 * 20 19 18 22 22 C 1.53001 * 109.47114 * 299.99980 * 21 20 19 23 23 C 1.52997 * 109.47382 * 180.02562 * 21 20 19 24 24 H 4.40641 * 5.51553 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46663 * 192.25038 * 3 2 1 26 26 H 1.09004 * 109.47083 * 72.25750 * 3 2 1 27 27 H 0.97004 * 120.00305 * 174.83957 * 8 7 5 28 28 H 1.08999 * 109.46860 * 300.00120 * 17 15 13 29 29 H 1.09005 * 109.46584 * 60.00141 * 17 15 13 30 30 H 1.09003 * 109.46983 * 179.97438 * 18 17 15 31 31 H 1.09004 * 109.46544 * 60.00003 * 18 17 15 32 32 H 1.09004 * 109.47077 * 299.99162 * 19 18 17 33 33 H 1.09000 * 109.46761 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.47285 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.47293 * 59.99958 * 20 19 18 36 36 H 1.09000 * 109.47121 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.47447 * 300.00213 * 22 21 20 38 38 H 1.09003 * 109.46968 * 59.99782 * 22 21 20 39 39 H 1.09000 * 109.47379 * 300.00354 * 23 21 20 40 40 H 1.09002 * 109.47335 * 59.99799 * 23 21 20 41 41 H 1.09000 * 109.47276 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9279 1.0223 5 6 3.2546 -2.2630 0.7347 6 1 3.5686 -2.5773 -0.2497 7 6 2.9721 -3.2117 1.7097 8 7 2.4828 -2.8359 2.8699 9 14 3.2877 -5.0216 1.3711 10 1 2.9054 -5.8220 2.5621 11 1 2.4789 -5.4550 0.2036 12 1 4.7290 -5.2263 1.0782 13 6 3.4668 -0.4695 2.2454 14 8 3.9676 -1.2179 3.0581 15 6 3.2156 0.9725 2.6035 16 1 3.4456 1.6051 1.7462 17 6 1.7467 1.1534 2.9914 18 6 1.4919 2.6175 3.3556 19 6 2.3832 3.0122 4.5348 20 6 3.8521 2.8314 4.1468 21 6 4.1069 1.3674 3.7828 22 6 3.7841 0.4790 4.9859 23 6 5.5759 1.1864 3.3954 24 1 -1.0499 -0.0001 0.0004 25 1 3.0088 1.0051 0.2181 26 1 3.0095 -0.3124 -0.9788 27 1 2.2155 -3.5021 3.5223 28 1 1.1118 0.8717 2.1514 29 1 1.5169 0.5208 3.8489 30 1 0.4453 2.7464 3.6315 31 1 1.7220 3.2503 2.4984 32 1 2.1531 2.3794 5.3919 33 1 2.2020 4.0554 4.7939 34 1 4.4871 3.1131 4.9868 35 1 4.0821 3.4643 3.2898 36 1 3.9652 -0.5640 4.7264 37 1 4.4190 0.7603 5.8261 38 1 2.7376 0.6079 5.2623 39 1 5.8064 1.8193 2.5385 40 1 6.2106 1.4676 4.2358 41 1 5.7573 0.1435 3.1356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281557060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:53 Heat of formation + Delta-G solvation = 30.705433 kcal Electronic energy + Delta-G solvation = -21772.681960 eV Core-core repulsion = 18847.765819 eV Total energy + Delta-G solvation = -2924.916141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82830 -37.18363 -34.65089 -32.57692 -32.31000 -31.18670 -30.17269 -26.59076 -26.40303 -26.09934 -24.20587 -22.47174 -20.66094 -19.55107 -17.96628 -17.33041 -16.42157 -15.69059 -14.87544 -14.70229 -14.07468 -13.98021 -13.71087 -13.65564 -13.09149 -12.91288 -12.49104 -12.38753 -11.94635 -11.68062 -11.39293 -11.25179 -11.06052 -10.93740 -10.91801 -10.67025 -10.45963 -10.37804 -10.24947 -10.07153 -9.94312 -9.70902 -9.55705 -9.41007 -9.11267 -8.85722 -7.54370 -6.93328 -5.87765 -3.77444 3.34929 3.36869 3.39680 3.50748 3.56663 4.36459 4.53481 5.02266 5.13335 5.16546 5.24138 5.38735 5.48246 5.64305 5.74636 5.79337 5.93102 5.98007 6.01197 6.04333 6.10051 6.17835 6.25836 6.34493 6.37333 6.43990 6.51782 6.56532 6.60867 6.67803 6.73397 6.76581 6.79811 6.97065 7.03908 7.18481 7.61232 7.66188 8.30059 8.37033 9.15113 9.28265 9.77290 10.51702 11.08863 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.008668 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.971783 B = 3229.664517 C = 3923.004160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.159 4.159 3 C 0.203 3.797 4 N -0.459 5.459 5 C -0.334 4.334 6 H 0.078 0.922 7 C 0.049 3.951 8 N -0.808 5.808 9 Si 0.912 3.088 10 H -0.287 1.287 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.473 3.527 14 O -0.490 6.490 15 C -0.088 4.088 16 H 0.065 0.935 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.037 4.037 22 C -0.163 4.163 23 C -0.142 4.142 24 H 0.206 0.794 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.257 0.743 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.027 0.973 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 10.388 -0.362 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.161 4.161 3 C 0.079 3.921 4 N -0.181 5.181 5 C -0.462 4.462 6 H 0.096 0.904 7 C -0.161 4.161 8 N -0.444 5.444 9 Si 0.740 3.260 10 H -0.213 1.213 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.260 3.740 14 O -0.364 6.364 15 C -0.110 4.110 16 H 0.083 0.917 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.145 4.145 21 C -0.038 4.038 22 C -0.220 4.220 23 C -0.199 4.199 24 H 0.223 0.777 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.364 9.921 0.305 9.932 hybrid contribution -0.429 -0.808 -0.207 0.938 sum -0.793 9.113 0.098 9.148 Atomic orbital electron populations 1.24600 0.95674 1.02888 1.02643 1.24070 0.95280 0.98316 0.98431 1.18633 0.83238 0.95138 0.95090 1.43433 1.57976 1.06216 1.10465 1.19054 1.47531 0.80224 0.99359 0.90435 1.25179 0.96922 0.98795 0.95222 1.70076 1.36069 1.33173 1.05051 0.86264 0.78571 0.83895 0.77247 1.21308 1.20607 1.20315 1.19562 0.83722 0.87663 0.83010 1.90315 1.42660 1.56742 1.46711 1.21255 0.95750 0.96727 0.97273 0.91716 1.21540 0.95536 0.95259 1.02470 1.21531 0.98606 0.97276 0.97852 1.21564 0.95502 0.99947 0.98654 1.21621 0.95890 0.96713 1.00250 1.20169 0.94511 0.93566 0.95507 1.22466 0.99395 1.05164 0.94927 1.21902 0.95199 1.03196 0.99580 0.77725 0.90020 0.90052 0.93190 0.91288 0.91255 0.92763 0.92679 0.91752 0.93079 0.92666 0.92773 0.86596 0.95431 0.93770 0.94081 0.93857 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.34 18.74 29.55 0.55 -3.78 16 2 C -0.16 -3.17 11.55 -37.12 -0.43 -3.60 16 3 C 0.20 4.01 5.65 -6.83 -0.04 3.97 16 4 N -0.46 -11.23 2.56 -117.94 -0.30 -11.53 16 5 C -0.33 -9.06 9.37 -14.94 -0.14 -9.20 16 6 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 7 C 0.05 1.36 4.82 -17.47 -0.08 1.27 16 8 N -0.81 -23.52 10.19 55.50 0.57 -22.96 16 9 Si 0.91 21.80 29.56 -169.99 -5.03 16.78 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.47 11.46 5.20 -10.99 -0.06 11.40 16 14 O -0.49 -13.45 8.64 5.55 0.05 -13.41 16 15 C -0.09 -1.72 1.14 -91.78 -0.10 -1.82 16 16 H 0.06 1.17 6.11 -51.93 -0.32 0.85 16 17 C -0.11 -2.07 4.88 -26.73 -0.13 -2.20 16 18 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 19 C -0.12 -1.68 5.65 -26.74 -0.15 -1.83 16 20 C -0.11 -1.58 4.73 -26.73 -0.13 -1.71 16 21 C -0.04 -0.66 0.51 -154.51 -0.08 -0.74 16 22 C -0.16 -3.21 7.46 37.16 0.28 -2.93 16 23 C -0.14 -2.50 8.19 37.16 0.30 -2.20 16 24 H 0.21 2.93 7.80 -54.10 -0.42 2.50 16 25 H 0.08 1.40 5.79 -51.93 -0.30 1.10 16 26 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 27 H 0.26 7.31 8.32 -40.82 -0.34 6.97 16 28 H 0.07 1.37 5.12 -51.93 -0.27 1.11 16 29 H 0.07 1.47 6.43 -51.93 -0.33 1.14 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.96 6.43 -51.93 -0.33 0.62 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.12 2.78 4.91 -52.02 -0.26 2.52 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.04 0.85 4.81 -51.93 -0.25 0.60 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.56 6.29 -51.93 -0.33 1.23 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -30.56 309.14 -6.57 -37.13 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.15 Total: 4.58 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.36 Total: -15.25 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.26 Total: -34.49 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.05 Total: -13.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.56 -6.57 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281557060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.833 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds