Wall clock time and date at job start Mon Mar 30 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47011 * 296.29808 * 3 2 1 5 5 C 1.37097 * 120.00036 * 268.79673 * 4 3 2 6 6 H 1.08007 * 119.99721 * 199.99916 * 5 4 3 7 7 C 1.38947 * 120.00342 * 20.00665 * 5 4 3 8 8 N 1.31418 * 119.99735 * 24.81150 * 7 5 4 9 9 Si 1.86801 * 120.00153 * 204.80973 * 7 5 4 10 10 H 1.48497 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46747 * 119.99928 * 9 7 5 12 12 H 1.48501 * 109.46876 * 239.99734 * 9 7 5 13 13 C 1.34777 * 120.00018 * 88.80242 * 4 3 2 14 14 O 1.21287 * 120.00462 * 185.17086 * 13 4 3 15 15 C 1.50702 * 119.99779 * 5.16748 * 13 4 3 16 16 H 1.09001 * 109.47213 * 339.14484 * 15 13 4 17 17 C 1.52994 * 109.47342 * 219.13988 * 15 13 4 18 18 C 1.53004 * 109.47354 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.46888 * 60.00048 * 18 17 15 20 20 C 1.52999 * 109.47381 * 300.00012 * 19 18 17 21 21 C 1.53001 * 109.47000 * 99.13975 * 15 13 4 22 22 C 1.52994 * 109.47118 * 60.00261 * 21 15 13 23 23 C 1.52999 * 109.47381 * 300.00065 * 21 15 13 24 24 H 4.40637 * 5.51313 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.46947 * 176.30367 * 3 2 1 26 26 H 1.08997 * 109.47169 * 56.30150 * 3 2 1 27 27 H 0.97000 * 119.99471 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.46747 * 60.00424 * 17 15 13 29 29 H 1.08991 * 109.47508 * 300.00315 * 17 15 13 30 30 H 1.09001 * 109.47090 * 300.00060 * 18 17 15 31 31 H 1.09001 * 109.47314 * 180.02562 * 18 17 15 32 32 H 1.09004 * 109.46946 * 179.97438 * 19 18 17 33 33 H 1.09001 * 109.46721 * 60.00155 * 19 18 17 34 34 H 1.08993 * 109.47011 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47009 * 300.00240 * 20 19 18 36 36 H 1.09006 * 109.47602 * 179.97438 * 22 21 15 37 37 H 1.08997 * 109.47287 * 299.99921 * 22 21 15 38 38 H 1.09001 * 109.47134 * 59.99892 * 22 21 15 39 39 H 1.09001 * 109.47309 * 299.99783 * 23 21 15 40 40 H 1.08997 * 109.46814 * 60.00207 * 23 21 15 41 41 H 1.09003 * 109.47143 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6111 1.2383 5 6 3.3862 0.1706 2.3361 6 1 4.0322 -0.1934 3.1215 7 6 2.8101 1.4308 2.4386 8 7 1.6940 1.6971 1.7979 9 14 3.6220 2.7466 3.4870 10 1 4.8584 2.1980 4.0998 11 1 3.9663 3.9143 2.6367 12 1 2.6862 3.1730 4.5583 13 6 3.3368 -1.9422 1.2982 14 8 3.6508 -2.4614 2.3484 15 6 3.1727 -2.7857 0.0601 16 1 2.5531 -2.2542 -0.6622 17 6 2.5021 -4.1101 0.4305 18 6 2.3349 -4.9662 -0.8266 19 6 3.7084 -5.2442 -1.4406 20 6 4.3790 -3.9198 -1.8110 21 6 4.5464 -3.0637 -0.5534 22 6 5.4162 -3.8098 0.4604 23 6 5.2171 -1.7393 -0.9238 24 1 -1.0499 0.0001 0.0002 25 1 3.0089 1.0264 -0.0663 26 1 3.0096 -0.5693 -0.8550 27 1 1.2917 2.5768 1.8697 28 1 1.5233 -3.9120 0.8675 29 1 3.1216 -4.6416 1.1527 30 1 1.7150 -4.4344 -1.5485 31 1 1.8567 -5.9095 -0.5628 32 1 3.5893 -5.8545 -2.3359 33 1 4.3282 -5.7759 -0.7187 34 1 5.3577 -4.1179 -2.2481 35 1 3.7592 -3.3881 -2.5329 36 1 6.3948 -4.0082 0.0232 37 1 5.5349 -3.1998 1.3558 38 1 4.9384 -4.7533 0.7242 39 1 4.5975 -1.2078 -1.6461 40 1 5.3358 -1.1293 -0.0283 41 1 6.1956 -1.9374 -1.3613 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281557062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:55 Heat of formation + Delta-G solvation = 10.597453 kcal Electronic energy + Delta-G solvation = -21501.755488 eV Core-core repulsion = 18575.967400 eV Total energy + Delta-G solvation = -2925.788088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11127 -37.42625 -35.05975 -32.95126 -32.02268 -31.16188 -30.45675 -27.07067 -26.38466 -26.19416 -24.67027 -22.63033 -20.84191 -19.38139 -17.90357 -17.46236 -16.50231 -16.17352 -15.04136 -14.87526 -14.41692 -14.31350 -13.80728 -13.69705 -13.18488 -12.72946 -12.69908 -12.21039 -12.17866 -11.97471 -11.63285 -11.55898 -11.43483 -11.13453 -11.07193 -11.00375 -10.66855 -10.50960 -10.44185 -10.27390 -10.03836 -9.69262 -9.65020 -9.22912 -9.12023 -8.83121 -8.15864 -7.76951 -6.23923 -3.79930 3.15738 3.28038 3.34448 3.75288 4.00655 4.16153 4.25099 4.82203 4.94787 4.98439 5.15373 5.22017 5.41507 5.49880 5.56691 5.62942 5.72508 5.75873 5.85723 5.87774 5.97093 6.06878 6.12232 6.17238 6.28173 6.29450 6.37177 6.39550 6.43472 6.48595 6.56854 6.68120 6.71239 6.74042 6.83749 7.00346 7.09922 7.61832 8.14328 8.49429 8.95604 9.21446 9.43701 10.01589 10.72366 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.007179 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.951724 B = 3899.443309 C = 4315.035444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.110 4.110 3 C 0.230 3.770 4 N -0.441 5.441 5 C -0.317 4.317 6 H 0.101 0.899 7 C 0.033 3.967 8 N -0.853 5.853 9 Si 0.912 3.088 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.465 3.535 14 O -0.579 6.579 15 C -0.093 4.093 16 H 0.077 0.923 17 C -0.101 4.101 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.049 4.049 22 C -0.143 4.143 23 C -0.150 4.150 24 H 0.196 0.804 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.266 0.734 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 -7.191 -9.348 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.112 4.112 3 C 0.107 3.893 4 N -0.159 5.159 5 C -0.445 4.445 6 H 0.119 0.881 7 C -0.172 4.172 8 N -0.490 5.490 9 Si 0.739 3.261 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.254 3.746 14 O -0.463 6.463 15 C -0.114 4.114 16 H 0.096 0.904 17 C -0.139 4.139 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.143 4.143 21 C -0.049 4.049 22 C -0.200 4.200 23 C -0.207 4.207 24 H 0.213 0.787 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.859 -7.251 -8.820 11.771 hybrid contribution -0.222 1.030 0.515 1.173 sum 2.637 -6.221 -8.306 10.707 Atomic orbital electron populations 1.24149 0.95259 1.04703 1.03768 1.23039 0.94296 0.96836 0.97068 1.18266 0.84551 0.99467 0.87010 1.43711 1.56791 1.04856 1.10568 1.19612 1.27629 0.96238 1.00980 0.88096 1.25276 0.94577 0.99274 0.98079 1.70152 1.14181 1.21924 1.42723 0.86095 0.79737 0.80710 0.79554 1.19267 1.20699 1.21012 1.19977 0.83164 0.82065 0.89444 1.90489 1.52573 1.71556 1.31698 1.21289 0.96697 0.96522 0.96920 0.90441 1.21369 1.00618 0.94745 0.97161 1.21541 0.96851 0.99435 0.97641 1.21575 0.96779 0.97281 1.00104 1.21602 1.00116 0.95742 0.96860 1.20368 0.94322 0.95371 0.94854 1.21985 0.97672 1.00855 0.99502 1.22039 0.99675 0.96814 1.02169 0.78682 0.88897 0.91180 0.92376 0.92319 0.90735 0.92288 0.92373 0.92653 0.91700 0.92217 0.92175 0.93917 0.90968 0.92411 0.92738 0.91311 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.58 19.09 29.55 0.56 -5.02 16 2 C -0.11 -2.53 10.79 -37.12 -0.40 -2.93 16 3 C 0.23 5.08 4.53 -6.83 -0.03 5.04 16 4 N -0.44 -10.94 2.21 -117.93 -0.26 -11.20 16 5 C -0.32 -8.70 9.22 -14.93 -0.14 -8.84 16 6 H 0.10 2.93 7.50 -52.48 -0.39 2.53 16 7 C 0.03 0.86 4.77 -17.47 -0.08 0.78 16 8 N -0.85 -22.66 9.42 55.50 0.52 -22.14 16 9 Si 0.91 20.55 29.62 -169.99 -5.03 15.51 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 C 0.46 10.99 4.90 -10.98 -0.05 10.94 16 14 O -0.58 -15.62 14.42 5.55 0.08 -15.54 16 15 C -0.09 -1.71 1.41 -91.77 -0.13 -1.84 16 16 H 0.08 1.42 5.74 -51.93 -0.30 1.12 16 17 C -0.10 -1.73 4.64 -26.73 -0.12 -1.86 16 18 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 19 C -0.12 -1.45 5.65 -26.73 -0.15 -1.60 16 20 C -0.11 -1.34 4.74 -26.70 -0.13 -1.47 16 21 C -0.05 -0.76 0.54 -154.48 -0.08 -0.84 16 22 C -0.14 -2.33 7.33 37.15 0.27 -2.06 16 23 C -0.15 -2.32 7.30 37.16 0.27 -2.05 16 24 H 0.20 3.48 7.80 -54.10 -0.42 3.06 16 25 H 0.09 2.13 7.04 -51.92 -0.37 1.77 16 26 H 0.07 1.31 3.96 -51.93 -0.21 1.10 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.35 6.16 -51.93 -0.32 1.03 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.42 6.30 -51.93 -0.33 1.10 16 38 H 0.06 0.91 4.81 -51.93 -0.25 0.66 16 39 H 0.05 0.78 6.71 -51.93 -0.35 0.43 16 40 H 0.07 1.26 6.93 -51.93 -0.36 0.90 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -30.11 310.61 -6.52 -36.63 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.14 Total: 5.52 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -0.37 Total: -13.46 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.26 Total: -33.34 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.08 Total: -15.54 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.11 -6.52 -36.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281557062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.226 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds