Wall clock time and date at job start Mon Mar 30 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47011 * 296.29808 * 3 2 1 5 5 C 1.37097 * 120.00036 * 268.79673 * 4 3 2 6 6 H 1.08007 * 119.99721 * 199.99916 * 5 4 3 7 7 C 1.38947 * 120.00342 * 20.00665 * 5 4 3 8 8 N 1.31418 * 119.99735 * 24.81150 * 7 5 4 9 9 Si 1.86801 * 120.00153 * 204.80973 * 7 5 4 10 10 H 1.48497 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46747 * 119.99928 * 9 7 5 12 12 H 1.48501 * 109.46876 * 239.99734 * 9 7 5 13 13 C 1.34777 * 120.00018 * 88.80242 * 4 3 2 14 14 O 1.21287 * 120.00462 * 185.17086 * 13 4 3 15 15 C 1.50702 * 119.99779 * 5.16748 * 13 4 3 16 16 H 1.09001 * 109.47213 * 339.14484 * 15 13 4 17 17 C 1.52994 * 109.47342 * 219.13988 * 15 13 4 18 18 C 1.53004 * 109.47354 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.46888 * 60.00048 * 18 17 15 20 20 C 1.52999 * 109.47381 * 300.00012 * 19 18 17 21 21 C 1.53001 * 109.47000 * 99.13975 * 15 13 4 22 22 C 1.52994 * 109.47118 * 60.00261 * 21 15 13 23 23 C 1.52999 * 109.47381 * 300.00065 * 21 15 13 24 24 H 4.40637 * 5.51313 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.46947 * 176.30367 * 3 2 1 26 26 H 1.08997 * 109.47169 * 56.30150 * 3 2 1 27 27 H 0.97000 * 119.99471 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.46747 * 60.00424 * 17 15 13 29 29 H 1.08991 * 109.47508 * 300.00315 * 17 15 13 30 30 H 1.09001 * 109.47090 * 300.00060 * 18 17 15 31 31 H 1.09001 * 109.47314 * 180.02562 * 18 17 15 32 32 H 1.09004 * 109.46946 * 179.97438 * 19 18 17 33 33 H 1.09001 * 109.46721 * 60.00155 * 19 18 17 34 34 H 1.08993 * 109.47011 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47009 * 300.00240 * 20 19 18 36 36 H 1.09006 * 109.47602 * 179.97438 * 22 21 15 37 37 H 1.08997 * 109.47287 * 299.99921 * 22 21 15 38 38 H 1.09001 * 109.47134 * 59.99892 * 22 21 15 39 39 H 1.09001 * 109.47309 * 299.99783 * 23 21 15 40 40 H 1.08997 * 109.46814 * 60.00207 * 23 21 15 41 41 H 1.09003 * 109.47143 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6111 1.2383 5 6 3.3862 0.1706 2.3361 6 1 4.0322 -0.1934 3.1215 7 6 2.8101 1.4308 2.4386 8 7 1.6940 1.6971 1.7979 9 14 3.6220 2.7466 3.4870 10 1 4.8584 2.1980 4.0998 11 1 3.9663 3.9143 2.6367 12 1 2.6862 3.1730 4.5583 13 6 3.3368 -1.9422 1.2982 14 8 3.6508 -2.4614 2.3484 15 6 3.1727 -2.7857 0.0601 16 1 2.5531 -2.2542 -0.6622 17 6 2.5021 -4.1101 0.4305 18 6 2.3349 -4.9662 -0.8266 19 6 3.7084 -5.2442 -1.4406 20 6 4.3790 -3.9198 -1.8110 21 6 4.5464 -3.0637 -0.5534 22 6 5.4162 -3.8098 0.4604 23 6 5.2171 -1.7393 -0.9238 24 1 -1.0499 0.0001 0.0002 25 1 3.0089 1.0264 -0.0663 26 1 3.0096 -0.5693 -0.8550 27 1 1.2917 2.5768 1.8697 28 1 1.5233 -3.9120 0.8675 29 1 3.1216 -4.6416 1.1527 30 1 1.7150 -4.4344 -1.5485 31 1 1.8567 -5.9095 -0.5628 32 1 3.5893 -5.8545 -2.3359 33 1 4.3282 -5.7759 -0.7187 34 1 5.3577 -4.1179 -2.2481 35 1 3.7592 -3.3881 -2.5329 36 1 6.3948 -4.0082 0.0232 37 1 5.5349 -3.1998 1.3558 38 1 4.9384 -4.7533 0.7242 39 1 4.5975 -1.2078 -1.6461 40 1 5.3358 -1.1293 -0.0283 41 1 6.1956 -1.9374 -1.3613 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281557062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:55 Heat of formation + Delta-G solvation = -5.615176 kcal Electronic energy + Delta-G solvation = -21502.458520 eV Core-core repulsion = 18575.967400 eV Total energy + Delta-G solvation = -2926.491120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62879 -39.01900 -36.98306 -34.22525 -33.86889 -32.99311 -31.79609 -28.57489 -27.89663 -27.64943 -26.42437 -24.03150 -22.04813 -20.94727 -19.68264 -18.95698 -18.29945 -17.95273 -16.62600 -16.47374 -16.01753 -15.75933 -15.31322 -15.11953 -14.65702 -14.25258 -14.02010 -13.83535 -13.75382 -13.58844 -13.38236 -12.90438 -12.81420 -12.71921 -12.47979 -12.32349 -12.26230 -12.15162 -11.89353 -11.71360 -11.27229 -11.09343 -11.01184 -10.95908 -10.86256 -10.58569 -9.99929 -9.75470 -8.25329 -5.89223 1.33399 1.40288 1.53428 1.95141 2.20301 2.35704 2.43191 3.05210 3.23775 3.72499 3.81826 3.88161 3.93511 4.22756 4.26310 4.36391 4.42637 4.48819 4.55775 4.63642 4.72048 4.81385 4.85882 4.87959 4.92331 5.06004 5.09999 5.14870 5.22357 5.27110 5.30789 5.35360 5.42969 5.46226 5.50036 5.50899 5.57337 5.74404 6.12139 6.50096 7.20898 7.22565 7.49591 8.09483 8.68500 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.007179 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.951724 B = 3899.443309 C = 4315.035444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.150 4.150 3 C 0.236 3.764 4 N -0.452 5.452 5 C -0.352 4.352 6 H 0.069 0.931 7 C 0.004 3.996 8 N -0.865 5.865 9 Si 0.975 3.025 10 H -0.275 1.275 11 H -0.265 1.265 12 H -0.282 1.282 13 C 0.458 3.542 14 O -0.625 6.625 15 C -0.084 4.084 16 H 0.082 0.918 17 C -0.100 4.100 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.047 4.047 22 C -0.138 4.138 23 C -0.148 4.148 24 H 0.228 0.772 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.269 0.731 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 -7.772 -11.920 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.152 4.152 3 C 0.114 3.886 4 N -0.170 5.170 5 C -0.480 4.480 6 H 0.087 0.913 7 C -0.200 4.200 8 N -0.502 5.502 9 Si 0.800 3.200 10 H -0.200 1.200 11 H -0.189 1.189 12 H -0.209 1.209 13 C 0.248 3.752 14 O -0.511 6.511 15 C -0.105 4.105 16 H 0.100 0.900 17 C -0.138 4.138 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.137 4.137 21 C -0.048 4.048 22 C -0.195 4.195 23 C -0.206 4.206 24 H 0.245 0.755 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.741 -7.823 -11.423 14.114 hybrid contribution -0.233 1.198 1.378 1.841 sum 2.508 -6.625 -10.045 12.292 Atomic orbital electron populations 1.24999 0.96256 1.03197 1.02217 1.23423 0.95082 0.98243 0.98484 1.18299 0.84579 0.98970 0.86798 1.43873 1.56981 1.05340 1.10835 1.19476 1.28667 0.97902 1.01939 0.91298 1.25931 0.94707 1.00204 0.99192 1.70240 1.14423 1.22304 1.43186 0.85165 0.78353 0.78350 0.78152 1.19982 1.18941 1.20851 1.20970 0.81373 0.82102 0.90721 1.90446 1.54264 1.72444 1.33981 1.21296 0.98978 0.95989 0.94265 0.89978 1.21372 0.98718 0.94698 0.99053 1.21516 0.98396 0.99269 0.95549 1.21592 0.95439 0.97290 1.01195 1.21592 1.01884 0.95343 0.94896 1.20434 0.92072 0.96168 0.96131 1.21918 0.99400 1.00090 0.98100 1.22024 1.01469 0.96251 1.00808 0.75501 0.90410 0.88048 0.92060 0.94657 0.92421 0.91362 0.90784 0.89615 0.91945 0.89872 0.90946 0.91293 0.95477 0.92216 0.91481 0.95173 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.35 19.09 74.32 1.42 -8.93 16 2 C -0.15 -6.87 10.79 31.13 0.34 -6.53 16 3 C 0.24 10.55 4.53 84.57 0.38 10.93 16 4 N -0.45 -23.41 2.21 -645.40 -1.42 -24.83 16 5 C -0.35 -20.30 9.22 84.04 0.77 -19.53 16 6 H 0.07 4.31 7.50 -2.91 -0.02 4.29 16 7 C 0.00 0.19 4.77 84.92 0.41 0.60 16 8 N -0.87 -46.31 9.42 21.66 0.20 -46.11 16 9 Si 0.98 43.04 29.62 68.60 2.03 45.08 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 C 0.46 22.66 4.90 87.66 0.43 23.09 16 14 O -0.62 -35.99 14.42 -3.05 -0.04 -36.04 16 15 C -0.08 -3.10 1.41 -11.54 -0.02 -3.11 16 16 H 0.08 2.93 5.74 -2.39 -0.01 2.91 16 17 C -0.10 -3.44 4.64 30.59 0.14 -3.30 16 18 C -0.11 -2.63 5.92 30.60 0.18 -2.45 16 19 C -0.12 -2.37 5.65 30.59 0.17 -2.19 16 20 C -0.10 -2.13 4.74 30.61 0.14 -1.99 16 21 C -0.05 -1.42 0.54 -52.16 -0.03 -1.45 16 22 C -0.14 -4.47 7.33 71.98 0.53 -3.94 16 23 C -0.15 -4.42 7.30 71.98 0.53 -3.89 16 24 H 0.23 7.53 7.80 -4.42 -0.03 7.50 16 25 H 0.08 3.66 7.04 -2.38 -0.02 3.64 16 26 H 0.10 3.75 3.96 -2.39 -0.01 3.74 16 27 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 28 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.06 2.15 6.16 -2.39 -0.01 2.13 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.31 6.43 -2.39 -0.02 1.29 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.03 1.10 6.30 -2.39 -0.02 1.09 16 38 H 0.06 1.87 4.81 -2.39 -0.01 1.86 16 39 H 0.07 1.79 6.71 -2.39 -0.02 1.77 16 40 H 0.03 1.12 6.93 -2.39 -0.02 1.10 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.92 310.61 7.17 -61.74 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.01 Total: 22.84 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 5.40 Total: -22.69 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.22 Total: -70.94 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.04 Total: -36.04 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.08 kcal Total: -68.92 7.17 -61.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281557062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.129 kcal (2) G-P(sol) polarization free energy of solvation -68.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds