Wall clock time and date at job start Mon Mar 30 2020 00:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99925 * 2 1 4 4 N 1.46503 * 109.47007 * 126.68873 * 3 2 1 5 5 C 1.46497 * 119.99832 * 281.11277 * 4 3 2 6 6 C 1.50697 * 109.47035 * 269.99708 * 5 4 3 7 7 H 1.07998 * 120.00165 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00086 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99605 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00306 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46929 * 60.00041 * 10 8 6 12 12 H 1.48496 * 109.47196 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47000 * 299.99955 * 10 8 6 14 14 C 1.34778 * 119.99731 * 101.10755 * 4 3 2 15 15 O 1.21283 * 120.00072 * 178.92745 * 14 4 3 16 16 C 1.50698 * 120.00229 * 358.93619 * 14 4 3 17 17 C 1.53003 * 112.85124 * 69.32759 * 16 14 4 18 18 C 1.50698 * 109.46798 * 55.29225 * 17 16 14 19 19 C 1.31001 * 119.99893 * 120.43422 * 18 17 16 20 20 C 1.53779 * 113.61553 * 200.53187 * 16 14 4 21 21 C 1.53947 * 87.02428 * 89.22344 * 20 16 14 22 22 C 1.53785 * 113.61153 * 298.13507 * 16 14 4 23 23 H 1.07994 * 120.00145 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.00064 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00058 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47229 * 6.69178 * 3 2 1 27 27 H 1.09004 * 109.47329 * 246.68831 * 3 2 1 28 28 H 1.08999 * 109.47248 * 30.00274 * 5 4 3 29 29 H 1.08999 * 109.46672 * 149.99860 * 5 4 3 30 30 H 0.97003 * 119.99623 * 180.02562 * 9 8 6 31 31 H 1.08996 * 109.47336 * 295.29020 * 17 16 14 32 32 H 1.09007 * 109.46501 * 175.28861 * 17 16 14 33 33 H 1.07993 * 119.99786 * 300.42882 * 18 17 16 34 34 H 1.08002 * 119.99920 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.00199 * 359.97438 * 19 18 17 36 36 H 1.08997 * 113.61701 * 203.74933 * 20 16 14 37 37 H 1.09004 * 113.61055 * 334.64729 * 20 16 14 38 38 H 1.09003 * 113.53997 * 270.81555 * 21 20 16 39 39 H 1.08995 * 113.67042 * 139.93070 * 21 20 16 40 40 H 1.09001 * 113.61727 * 25.34611 * 22 16 14 41 41 H 1.08999 * 113.61862 * 156.25377 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0223 1.3154 1.1076 5 6 2.5640 1.5957 2.4705 6 6 2.6335 3.0787 2.7289 7 1 2.9836 3.7458 1.9551 8 6 2.2502 3.5840 3.9531 9 7 1.8233 2.7716 4.8953 10 14 2.3370 5.4222 4.2736 11 1 1.4682 6.1354 3.3032 12 1 1.8723 5.7063 5.6551 13 1 3.7388 5.8862 4.1171 14 6 4.3260 1.0669 0.8726 15 8 5.1229 1.0946 1.7865 16 6 4.7935 0.7548 -0.5256 17 6 4.7166 1.9630 -1.4613 18 6 5.4910 3.1101 -0.8651 19 6 6.4997 3.6299 -1.5197 20 6 6.1450 0.0229 -0.5743 21 6 5.3457 -1.2904 -0.4934 22 6 4.1678 -0.5208 -1.1140 23 1 -0.5400 0.9352 0.0004 24 1 -0.5400 -0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3612 2.1301 0.1197 27 1 2.5973 1.4165 -0.9438 28 1 1.5351 1.2546 2.5853 29 1 3.2017 1.0724 3.1830 30 1 1.5533 3.1271 5.7564 31 1 3.6750 2.2563 -1.5911 32 1 5.1436 1.7004 -2.4293 33 1 5.2144 3.5036 0.1018 34 1 7.0544 4.4523 -1.0926 35 1 6.7765 3.2361 -2.4865 36 1 6.6781 0.1523 -1.5162 37 1 6.7730 0.2072 0.2974 38 1 5.1596 -1.6246 0.5273 39 1 5.7368 -2.0808 -1.1339 40 1 3.2019 -0.7748 -0.6775 41 1 4.1592 -0.5404 -2.2038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293704525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:54 Heat of formation + Delta-G solvation = 32.662002 kcal Electronic energy + Delta-G solvation = -20967.924308 eV Core-core repulsion = 18043.093011 eV Total energy + Delta-G solvation = -2924.831297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56224 -37.09003 -35.70889 -34.23401 -33.12269 -32.02787 -28.96465 -27.35764 -25.69007 -25.37090 -23.85972 -22.56787 -20.47518 -19.94247 -19.39546 -17.65889 -16.48571 -16.17800 -15.83462 -15.34067 -14.83838 -14.35494 -14.22913 -13.99038 -13.73717 -13.23542 -12.85135 -12.60246 -12.25257 -12.09552 -12.02427 -11.59072 -11.22459 -11.20090 -11.09145 -10.90464 -10.84242 -10.61080 -10.54840 -10.32236 -10.17052 -9.86115 -9.61665 -9.16530 -8.96010 -8.75783 -8.41021 -7.64338 -6.02073 -4.06515 2.48136 2.52340 3.32363 3.36864 3.38468 3.46431 3.99528 4.45797 4.64026 4.73609 4.89783 4.99427 5.18082 5.25461 5.30604 5.34614 5.40007 5.46243 5.51179 5.65343 5.78366 5.85843 5.88776 5.99525 6.04846 6.12031 6.16366 6.24949 6.34727 6.41637 6.54156 6.84887 6.90354 6.95392 7.00546 7.14619 7.47554 7.59359 7.94657 8.26302 8.46878 8.92744 9.14778 9.58306 11.06010 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.007557 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.465912 B = 3704.447332 C = 4500.874736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.169 4.169 3 C 0.124 3.876 4 N -0.589 5.589 5 C 0.248 3.752 6 C -0.524 4.524 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.533 3.467 15 O -0.536 6.536 16 C -0.100 4.100 17 C -0.078 4.078 18 C -0.138 4.138 19 C -0.204 4.204 20 C -0.116 4.116 21 C -0.142 4.142 22 C -0.146 4.146 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.263 0.737 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -5.396 -15.334 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.001 3.999 4 N -0.320 5.320 5 C 0.129 3.871 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.319 3.681 15 O -0.413 6.413 16 C -0.104 4.104 17 C -0.115 4.115 18 C -0.156 4.156 19 C -0.241 4.241 20 C -0.154 4.154 21 C -0.179 4.179 22 C -0.183 4.183 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.129 0.871 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.480 -5.366 -14.613 15.763 hybrid contribution -0.098 1.077 0.326 1.130 sum 2.382 -4.288 -14.286 15.105 Atomic orbital electron populations 1.23816 0.95858 1.01722 1.00644 1.23542 0.96256 0.99139 0.99894 1.20889 0.92796 0.95160 0.91073 1.48123 1.05820 1.67905 1.10123 1.19238 0.95257 0.96269 0.76331 1.21380 1.43692 0.92359 0.98868 0.92575 1.24924 0.95201 0.98071 0.95861 1.69931 1.43990 1.34673 1.04772 0.86596 0.78506 0.85322 0.77233 1.20276 1.21180 1.20206 1.19616 0.82578 0.77191 0.88707 1.90655 1.53172 1.52013 1.45479 1.21970 0.99084 0.94851 0.94463 1.20889 1.00855 0.92625 0.97166 1.23014 0.96550 0.96077 0.99919 1.23689 0.98603 1.01614 1.00203 1.22834 0.95307 0.94691 1.02580 1.22839 0.97066 0.96702 1.01285 1.23427 0.99778 0.94573 1.00487 0.88348 0.88795 0.87111 0.90091 0.89387 0.94984 0.94079 0.92720 0.89921 0.90912 0.86824 0.88783 0.89057 0.90092 0.90056 0.90149 0.91570 0.89431 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 14.32 29.02 0.42 -2.00 16 2 C -0.17 -2.45 8.64 -36.03 -0.31 -2.76 16 3 C 0.12 2.04 5.19 -5.19 -0.03 2.02 16 4 N -0.59 -12.43 2.46 -176.44 -0.43 -12.87 16 5 C 0.25 6.53 5.13 -5.20 -0.03 6.50 16 6 C -0.52 -14.88 9.39 -34.44 -0.32 -15.20 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 10 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.53 11.09 5.43 -10.99 -0.06 11.03 16 15 O -0.54 -13.66 15.58 5.56 0.09 -13.57 16 16 C -0.10 -1.54 0.30 -154.85 -0.05 -1.58 16 17 C -0.08 -1.06 4.78 -27.88 -0.13 -1.20 16 18 C -0.14 -2.15 8.84 -36.03 -0.32 -2.47 16 19 C -0.20 -2.72 14.32 29.01 0.42 -2.30 16 20 C -0.12 -1.66 7.01 -25.83 -0.18 -1.84 16 21 C -0.14 -1.84 7.81 -25.83 -0.20 -2.05 16 22 C -0.15 -1.81 6.20 -25.91 -0.16 -1.97 16 23 H 0.10 1.29 7.85 -52.49 -0.41 0.88 16 24 H 0.09 1.07 8.06 -52.48 -0.42 0.65 16 25 H 0.11 1.52 5.88 -52.49 -0.31 1.22 16 26 H 0.08 1.39 7.80 -51.93 -0.41 0.99 16 27 H 0.09 1.22 3.39 -51.93 -0.18 1.05 16 28 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 29 H 0.04 1.23 7.44 -51.93 -0.39 0.84 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.08 1.08 5.56 -51.93 -0.29 0.79 16 32 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 33 H 0.11 2.17 7.75 -52.49 -0.41 1.77 16 34 H 0.09 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.09 1.02 7.83 -52.48 -0.41 0.61 16 36 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 37 H 0.08 1.37 7.35 -51.93 -0.38 0.99 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.13 3.57 -51.93 -0.19 0.94 16 41 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -32.18 329.86 -6.97 -39.16 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.25 Total: 3.51 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.06 Total: -12.16 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.30 Total: -38.93 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.18 -6.97 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293704525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.819 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds