Wall clock time and date at job start Mon Mar 30 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38284 * 119.97028 * 2 1 4 4 C 1.38242 * 120.11266 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97759 * 179.97438 * 4 3 2 6 6 C 1.38170 * 120.05333 * 0.02562 * 4 3 2 7 7 C 1.50696 * 120.02976 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.47278 * 345.00118 * 7 6 4 9 9 C 1.52999 * 109.47017 * 105.00270 * 7 6 4 10 10 N 1.46905 * 109.47161 * 225.00195 * 7 6 4 11 11 C 1.46901 * 110.99870 * 155.00107 * 10 7 6 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 7 13 13 C 1.50703 * 109.46807 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00107 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99714 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99834 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00034 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47154 * 89.99933 * 17 15 13 19 19 H 1.48501 * 109.47128 * 209.99734 * 17 15 13 20 20 H 1.48501 * 109.47273 * 329.99905 * 17 15 13 21 21 C 1.38718 * 119.94260 * 0.23401 * 6 4 3 22 22 O 1.35899 * 120.05539 * 179.72151 * 21 6 4 23 23 C 1.38113 * 119.96895 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.46990 * 90.00192 * 1 2 3 25 25 H 1.08994 * 109.47568 * 210.00068 * 1 2 3 26 26 H 1.09005 * 109.47330 * 330.00531 * 1 2 3 27 27 H 1.08009 * 119.94695 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.46979 * 270.02115 * 5 4 3 29 29 H 1.09002 * 109.46635 * 30.01863 * 5 4 3 30 30 H 1.09000 * 109.47385 * 150.01721 * 5 4 3 31 31 H 1.09006 * 109.47163 * 180.02562 * 9 7 6 32 32 H 1.08999 * 109.47123 * 299.99777 * 9 7 6 33 33 H 1.08997 * 109.47624 * 60.00343 * 9 7 6 34 34 H 1.00901 * 110.99869 * 31.04818 * 10 7 6 35 35 H 1.09004 * 109.47031 * 299.99620 * 11 10 7 36 36 H 1.08995 * 109.47111 * 59.99900 * 11 10 7 37 37 H 1.08995 * 109.46615 * 299.99641 * 12 11 10 38 38 H 1.08996 * 109.46939 * 60.00272 * 12 11 10 39 39 H 0.96997 * 120.00332 * 179.97438 * 16 15 13 40 40 H 0.96698 * 113.99608 * 89.99886 * 22 21 6 41 41 H 1.07998 * 120.03069 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.3300 2.5086 -0.0011 6 6 4.2752 0.0072 -0.0016 7 6 5.7822 0.0115 -0.0028 8 1 6.1425 1.0054 -0.2686 9 6 6.2943 -0.3610 1.3900 10 7 6.2739 -0.9660 -0.9830 11 6 7.6199 -0.6100 -1.4517 12 6 8.0968 -1.6483 -2.4692 13 6 9.4774 -1.2828 -2.9504 14 1 9.9655 -0.3982 -2.5690 15 6 10.1171 -2.0778 -3.8776 16 7 11.3216 -1.7585 -4.2980 17 14 9.2724 -3.6075 -4.5378 18 1 8.4877 -3.2561 -5.7486 19 1 10.2953 -4.6252 -4.8890 20 1 8.3628 -4.1573 -3.5007 21 6 3.5845 -1.1958 -0.0071 22 8 4.2657 -2.3718 -0.0138 23 6 2.1970 -1.1965 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5138 27 1 1.6565 2.1325 0.0004 28 1 4.5100 2.8237 -1.0289 29 1 3.7390 3.2665 0.5131 30 1 5.2831 2.3811 0.5121 31 1 7.3843 -0.3574 1.3893 32 1 5.9295 0.3642 2.1173 33 1 5.9341 -1.3549 1.6558 34 1 5.6332 -1.0552 -1.7574 35 1 7.5927 0.3731 -1.9218 36 1 8.3057 -0.5889 -0.6048 37 1 8.1239 -2.6315 -1.9994 38 1 7.4109 -1.6689 -3.3160 39 1 11.7720 -2.3179 -4.9500 40 1 4.4638 -2.7166 0.8676 41 1 1.6570 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294425738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:23 Heat of formation + Delta-G solvation = -34.161535 kcal Electronic energy + Delta-G solvation = -19863.277530 eV Core-core repulsion = 16935.548547 eV Total energy + Delta-G solvation = -2927.728983 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31853 -36.93207 -36.52336 -33.98648 -32.72947 -31.18294 -30.34547 -28.35194 -27.32006 -26.71719 -24.04563 -22.40245 -21.35399 -20.29582 -19.88385 -17.62932 -16.78610 -16.36949 -16.14352 -15.05358 -14.63764 -14.23902 -14.02619 -13.87809 -13.58306 -13.45690 -13.21184 -12.91378 -12.69358 -12.63724 -12.51674 -12.15750 -11.96737 -11.59890 -11.55414 -11.36053 -11.17063 -11.02670 -10.87792 -10.20069 -9.91035 -9.77611 -9.65975 -9.16043 -8.61073 -8.48249 -8.42948 -7.74945 -5.99522 -3.97295 1.20682 1.23966 3.37287 3.44188 3.50273 3.52336 4.27471 4.51948 4.57178 4.62897 4.77388 4.86654 5.16915 5.17888 5.26850 5.35521 5.36509 5.38801 5.45862 5.55914 5.59272 5.64556 5.73207 5.83138 6.03863 6.06959 6.07280 6.24778 6.32199 6.37446 6.38595 6.44493 6.57403 6.81526 6.87673 7.25665 7.48011 7.73246 7.85496 7.86780 8.04731 8.58919 9.04786 9.63548 11.13881 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.004380 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.608103 B = 6390.459636 C = 6814.691432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.136 4.136 4 C -0.061 4.061 5 C -0.120 4.120 6 C -0.119 4.119 7 C 0.124 3.876 8 H 0.051 0.949 9 C -0.133 4.133 10 N -0.671 5.671 11 C 0.073 3.927 12 C -0.008 4.008 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.066 3.934 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.262 1.262 21 C 0.137 3.863 22 O -0.472 6.472 23 C -0.159 4.159 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.338 0.662 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.007 0.993 39 H 0.262 0.738 40 H 0.384 0.616 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.209 5.147 12.385 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.154 4.154 4 C -0.062 4.062 5 C -0.176 4.176 6 C -0.120 4.120 7 C 0.014 3.986 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.303 5.303 11 C -0.056 4.056 12 C -0.046 4.046 13 C -0.558 4.558 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.545 5.545 17 Si 0.708 3.292 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.186 1.186 21 C 0.092 3.908 22 O -0.282 6.282 23 C -0.178 4.178 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.240 0.760 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.847 4.705 12.139 24.579 hybrid contribution -0.463 -0.132 -0.601 0.769 sum -21.310 4.573 11.539 24.661 Atomic orbital electron populations 1.20777 0.91176 1.02607 1.02352 1.19711 0.95886 0.92677 0.99025 1.20828 0.93284 0.97479 1.03800 1.19666 0.93502 0.94637 0.98411 1.20883 1.00311 0.93721 1.02720 1.20315 0.96199 0.92302 1.03213 1.20404 0.88358 0.95075 0.94784 0.93129 1.21735 1.01539 1.00980 0.94812 1.60668 1.04453 1.47133 1.18003 1.22016 0.88006 0.97398 0.98133 1.19518 0.96225 0.95369 0.93472 1.21096 0.99390 1.11338 1.23974 0.91195 1.25001 0.94693 0.97720 0.96025 1.69916 1.13406 1.39138 1.32037 0.86752 0.79471 0.83288 0.79679 1.20453 1.21497 1.18647 1.18253 0.89184 0.85583 0.97821 1.84948 1.75873 1.34753 1.32591 1.21307 0.93611 0.98143 1.04733 0.91152 0.91605 0.91596 0.86149 0.90915 0.91511 0.90889 0.91971 0.93320 0.92483 0.84348 0.96434 0.91861 0.95596 0.97436 0.92796 0.75993 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.07 -0.77 5.88 -104.65 -0.62 -1.38 16 3 C -0.14 -1.45 9.35 -39.56 -0.37 -1.82 16 4 C -0.06 -0.73 5.88 -104.65 -0.62 -1.35 16 5 C -0.12 -1.21 9.23 36.00 0.33 -0.87 16 6 C -0.12 -1.60 4.68 -104.47 -0.49 -2.08 16 7 C 0.12 1.80 2.21 -68.86 -0.15 1.65 16 8 H 0.05 0.75 5.58 -51.93 -0.29 0.46 16 9 C -0.13 -1.74 9.33 37.16 0.35 -1.39 16 10 N -0.67 -11.93 4.90 -107.95 -0.53 -12.46 16 11 C 0.07 1.52 5.42 -3.82 -0.02 1.50 16 12 C -0.01 -0.20 4.30 -27.88 -0.12 -0.32 16 13 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.91 -28.57 13.96 55.43 0.77 -27.79 16 17 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 21 C 0.14 1.80 6.27 -39.21 -0.25 1.56 16 22 O -0.47 -6.37 11.29 -19.42 -0.22 -6.59 16 23 C -0.16 -1.85 9.64 -39.44 -0.38 -2.23 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 31 H 0.06 0.87 7.45 -51.93 -0.39 0.49 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.71 6.92 -51.93 -0.36 0.35 16 34 H 0.34 6.27 8.00 -39.29 -0.31 5.96 16 35 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.06 1.33 7.44 -51.93 -0.39 0.95 16 37 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 38 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 40 H 0.38 3.76 8.26 45.56 0.38 4.13 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -32.62 329.65 -7.91 -40.53 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.84 Total: 4.38 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -2.40 Total: -20.94 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.25 Total: -40.26 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.22 Total: -6.59 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.62 -7.91 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294425738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.372 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds