Wall clock time and date at job start Mon Mar 30 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38279 * 119.98091 * 2 1 4 4 C 1.38238 * 120.11885 * 179.77009 * 3 2 1 5 5 C 1.50698 * 119.97692 * 180.25517 * 4 3 2 6 6 C 1.38172 * 120.04939 * 0.50890 * 4 3 2 7 7 C 1.50705 * 120.02767 * 179.77317 * 6 4 3 8 8 H 1.09003 * 109.46955 * 13.58963 * 7 6 4 9 9 C 1.52998 * 109.46955 * 253.59844 * 7 6 4 10 10 N 1.46897 * 109.47367 * 133.59200 * 7 6 4 11 11 C 1.46897 * 111.00176 * 204.99545 * 10 7 6 12 12 C 1.52991 * 109.47152 * 180.02562 * 11 10 7 13 13 C 1.50703 * 109.47164 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99894 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99909 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99505 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00127 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.47065 * 90.00553 * 17 15 13 19 19 H 1.48504 * 109.47423 * 210.00449 * 17 15 13 20 20 H 1.48497 * 109.47254 * 330.00592 * 17 15 13 21 21 C 1.38715 * 119.94596 * 359.49025 * 6 4 3 22 22 O 1.35898 * 120.05393 * 180.27769 * 21 6 4 23 23 C 1.38133 * 119.96363 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46916 * 269.98004 * 1 2 3 25 25 H 1.09003 * 109.46665 * 29.97453 * 1 2 3 26 26 H 1.08991 * 109.47838 * 149.97633 * 1 2 3 27 27 H 1.08009 * 119.94028 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46981 * 264.30914 * 5 4 3 29 29 H 1.08997 * 109.47397 * 24.30973 * 5 4 3 30 30 H 1.08997 * 109.47311 * 144.31291 * 5 4 3 31 31 H 1.09004 * 109.46924 * 300.00044 * 9 7 6 32 32 H 1.09000 * 109.47489 * 59.99288 * 9 7 6 33 33 H 1.08999 * 109.47279 * 180.02562 * 9 7 6 34 34 H 1.00898 * 110.99471 * 81.04811 * 10 7 6 35 35 H 1.08994 * 109.47396 * 300.00736 * 11 10 7 36 36 H 1.08999 * 109.46663 * 60.00554 * 11 10 7 37 37 H 1.08994 * 109.47514 * 300.00594 * 12 11 10 38 38 H 1.09003 * 109.47384 * 60.00422 * 12 11 10 39 39 H 0.97001 * 119.99709 * 180.02562 * 16 15 13 40 40 H 0.96698 * 113.99710 * 90.00151 * 22 21 6 41 41 H 1.07999 * 120.03002 * 359.95697 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5804 1.2011 0.0048 5 6 4.3302 2.5083 0.0106 6 6 4.2752 0.0068 -0.0010 7 6 5.7822 0.0110 -0.0009 8 1 6.1427 1.0098 0.2454 9 6 6.2934 -0.3881 -1.3867 10 7 6.2746 -0.9474 0.9975 11 6 7.6209 -0.5827 1.4582 12 6 8.0989 -1.6020 2.4942 13 6 9.4799 -1.2275 2.9673 14 1 9.9679 -0.3505 2.5687 15 6 10.1206 -2.0053 3.9084 16 7 11.3255 -1.6781 4.3217 17 14 9.2768 -3.5227 4.5974 18 1 9.6134 -4.7004 3.7577 19 1 9.7400 -3.7580 5.9886 20 1 7.8063 -3.3160 4.5936 21 6 3.5844 -1.1962 -0.0010 22 8 4.2656 -2.3721 -0.0010 23 6 2.1969 -1.1967 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6567 2.1324 0.0004 28 1 4.6029 2.7752 -1.0104 29 1 3.6972 3.2884 0.4334 30 1 5.2329 2.4067 0.6130 31 1 5.9328 -1.3868 -1.6332 32 1 5.9280 0.3231 -2.1275 33 1 7.3834 -0.3855 -1.3866 34 1 6.2596 -1.8883 0.6335 35 1 8.3061 -0.5779 0.6107 36 1 7.5941 0.4091 1.9095 37 1 7.4138 -1.6073 3.3418 38 1 8.1258 -2.5938 2.0426 39 1 11.7765 -2.2254 4.9835 40 1 4.4627 -2.7124 0.8824 41 1 1.6568 -2.1319 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294425741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:24 Heat of formation + Delta-G solvation = -57.805616 kcal Electronic energy + Delta-G solvation = -19875.023531 eV Core-core repulsion = 16946.269263 eV Total energy + Delta-G solvation = -2928.754268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23312 -38.15098 -37.70084 -35.50994 -34.35698 -32.73586 -31.34450 -29.78099 -28.07372 -27.53433 -25.85392 -23.52170 -22.51713 -22.31980 -20.94766 -18.99764 -18.51241 -17.43656 -16.97593 -16.25082 -16.17779 -15.95072 -15.22248 -15.10170 -14.77760 -14.56790 -14.29481 -14.14661 -14.04594 -13.79832 -13.53181 -13.27529 -13.23155 -13.05015 -12.87707 -12.45033 -12.29027 -12.13406 -12.10456 -11.92993 -11.76210 -11.57550 -11.42634 -11.00524 -10.76727 -9.46896 -9.37645 -9.19758 -8.29729 -6.34302 0.37853 0.41275 1.37084 1.39497 1.52255 2.37149 2.63150 3.06038 3.35728 3.41702 3.83782 3.90739 4.05719 4.11235 4.32490 4.43977 4.45263 4.50310 4.56831 4.59018 4.65146 4.74470 4.81016 4.87025 4.88029 4.95982 4.98513 5.06954 5.16868 5.26159 5.28884 5.36585 5.46077 5.54087 5.61076 5.65256 5.73246 6.00807 6.18556 6.26058 6.54688 6.74522 6.86542 7.30563 8.87041 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.004382 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.022664 B = 6388.060078 C = 6806.899640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.073 4.073 5 C -0.117 4.117 6 C -0.113 4.113 7 C 0.124 3.876 8 H 0.085 0.915 9 C -0.168 4.168 10 N -0.685 5.685 11 C 0.088 3.912 12 C -0.002 4.002 13 C -0.534 4.534 14 H 0.031 0.969 15 C 0.004 3.996 16 N -0.952 5.952 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.246 1.246 21 C 0.117 3.883 22 O -0.506 6.506 23 C -0.168 4.168 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.345 0.655 35 H 0.016 0.984 36 H 0.054 0.946 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.267 0.733 40 H 0.401 0.599 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.204 3.806 -10.733 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.155 4.155 4 C -0.073 4.073 5 C -0.174 4.174 6 C -0.114 4.114 7 C 0.014 3.986 8 H 0.103 0.897 9 C -0.226 4.226 10 N -0.318 5.318 11 C -0.040 4.040 12 C -0.040 4.040 13 C -0.572 4.572 14 H 0.049 0.951 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.169 1.169 21 C 0.073 3.927 22 O -0.318 6.318 23 C -0.186 4.186 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.166 0.834 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.260 0.740 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.413 4.111 -10.701 26.068 hybrid contribution 1.196 -0.955 0.246 1.550 sum -22.216 3.157 -10.454 24.755 Atomic orbital electron populations 1.20821 0.88939 1.03735 1.03150 1.20077 0.97543 0.92155 0.97948 1.21148 0.92936 0.98620 1.02829 1.19880 0.94269 0.94740 0.98436 1.20895 1.00083 0.93419 1.02971 1.20074 0.95092 0.92957 1.03284 1.20432 0.90610 0.97073 0.90463 0.89723 1.22352 1.00599 1.02306 0.97371 1.60678 1.24526 1.06469 1.40164 1.21630 0.87395 0.98818 0.96201 1.19414 0.93984 0.95281 0.95328 1.21416 1.01305 1.11173 1.23323 0.95086 1.26019 0.95304 1.01486 0.96446 1.70071 1.15187 1.41281 1.32698 0.85587 0.80259 0.78871 0.77470 1.19118 1.21090 1.16917 1.18365 0.90009 0.84956 0.99399 1.84668 1.76211 1.36055 1.34896 1.21434 0.93024 0.99257 1.04881 0.90323 0.90159 0.90901 0.83794 0.90106 0.89813 0.91995 0.92204 0.91379 0.93088 0.83443 0.96541 0.92787 0.95811 0.96319 0.92464 0.74013 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.08 -1.51 5.88 -19.88 -0.12 -1.62 16 3 C -0.14 -2.73 9.33 22.28 0.21 -2.52 16 4 C -0.07 -1.68 5.88 -19.88 -0.12 -1.80 16 5 C -0.12 -2.24 9.37 71.24 0.67 -1.57 16 6 C -0.11 -3.02 4.96 -19.76 -0.10 -3.12 16 7 C 0.12 3.55 2.43 44.17 0.11 3.65 16 8 H 0.08 2.45 5.25 -2.39 -0.01 2.44 16 9 C -0.17 -4.49 9.06 71.98 0.65 -3.84 16 10 N -0.68 -22.42 5.55 -495.48 -2.75 -25.16 16 11 C 0.09 3.56 5.42 86.30 0.47 4.03 16 12 C 0.00 -0.11 4.30 29.85 0.13 0.02 16 13 C -0.53 -31.24 9.66 25.60 0.25 -30.99 16 14 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 15 C 0.00 0.25 5.47 84.66 0.46 0.71 16 16 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 17 Si 0.95 44.72 27.47 68.60 1.88 46.60 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.25 -10.72 6.54 99.48 0.65 -10.06 16 21 C 0.12 3.07 6.44 22.51 0.15 3.21 16 22 O -0.51 -12.89 10.52 -92.40 -0.97 -13.87 16 23 C -0.17 -3.78 9.64 22.37 0.22 -3.57 16 24 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 26 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 27 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.27 8.05 -2.39 -0.02 1.25 16 30 H 0.06 1.35 6.23 -2.39 -0.01 1.33 16 31 H 0.06 1.66 7.34 -2.38 -0.02 1.64 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.43 7.45 -2.39 -0.02 1.41 16 34 H 0.34 10.72 6.22 -89.70 -0.56 10.17 16 35 H 0.02 0.67 7.43 -2.39 -0.02 0.66 16 36 H 0.05 2.25 8.06 -2.39 -0.02 2.23 16 37 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 38 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 39 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 40 H 0.40 8.60 8.23 -74.06 -0.61 7.99 16 41 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -68.20 328.13 1.95 -66.24 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.19 Total: 24.34 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.68 Total: -38.09 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.45 Total: -85.23 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.97 Total: -13.87 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -68.20 1.95 -66.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294425741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.438 kcal (2) G-P(sol) polarization free energy of solvation -68.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds