Wall clock time and date at job start Mon Mar 30 2020 00:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46838 * 2 1 4 4 O 1.42898 * 109.46984 * 239.99506 * 2 1 3 5 5 C 1.50705 * 109.47109 * 119.99726 * 2 1 3 6 6 C 1.38232 * 119.99941 * 149.99728 * 5 2 1 7 7 C 1.38231 * 120.00172 * 180.02562 * 6 5 2 8 8 C 1.38240 * 119.99606 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99465 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.46656 * 90.00471 * 9 8 7 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47332 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99871 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00534 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99727 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00639 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 89.99777 * 17 15 13 19 19 H 1.48497 * 109.47267 * 210.00472 * 17 15 13 20 20 H 1.48503 * 109.46510 * 330.00340 * 17 15 13 21 21 C 1.38225 * 120.00133 * 0.26011 * 8 7 6 22 22 C 1.38235 * 120.00171 * 359.48495 * 21 8 7 23 23 H 1.09000 * 109.47162 * 300.00006 * 1 2 3 24 24 H 1.09000 * 109.47134 * 60.00078 * 1 2 3 25 25 H 1.08999 * 109.46777 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46389 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46762 * 299.99569 * 3 2 1 28 28 H 1.09000 * 109.47249 * 60.00047 * 3 2 1 29 29 H 0.96705 * 113.99955 * 60.00789 * 4 2 1 30 30 H 1.08005 * 119.99979 * 0.02562 * 6 5 2 31 31 H 1.07996 * 120.00082 * 179.97438 * 7 6 5 32 32 H 1.08990 * 109.47142 * 330.00456 * 9 8 7 33 33 H 1.09004 * 109.46726 * 210.00353 * 9 8 7 34 34 H 1.00896 * 111.00219 * 303.95295 * 10 9 8 35 35 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 36 36 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 37 37 H 1.08995 * 109.47213 * 300.00679 * 12 11 10 38 38 H 1.09008 * 109.47264 * 60.00068 * 12 11 10 39 39 H 0.97001 * 120.00114 * 179.97438 * 16 15 13 40 40 H 1.08008 * 119.99963 * 179.72915 * 21 8 7 41 41 H 1.08000 * 120.00543 * 180.22829 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0324 -0.7104 1.2305 6 6 3.2402 -1.3818 1.1963 7 6 3.7008 -2.0339 2.3248 8 6 2.9537 -2.0140 3.4878 9 6 3.4556 -2.7253 4.7179 10 7 4.2723 -1.8029 5.5179 11 6 4.7794 -2.4632 6.7283 12 6 5.6239 -1.4736 7.5334 13 6 6.1436 -2.1507 8.7753 14 1 5.8966 -3.1838 8.9706 15 6 6.9352 -1.4519 9.6617 16 7 7.2365 -0.1940 9.4237 17 14 7.5800 -2.2914 11.2008 18 1 8.8932 -2.9200 10.9085 19 1 7.7418 -1.2865 12.2820 20 1 6.6173 -3.3354 11.6353 21 6 1.7436 -1.3466 3.5206 22 6 1.2856 -0.6901 2.3936 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.7211 -0.2702 -1.9980 30 1 3.8241 -1.3970 0.2878 31 1 4.6442 -2.5588 2.2979 32 1 4.0605 -3.5819 4.4209 33 1 2.6075 -3.0675 5.3111 34 1 5.0288 -1.4215 4.9698 35 1 3.9403 -2.8033 7.3352 36 1 5.3934 -3.3183 6.4455 37 1 6.4629 -1.1339 6.9262 38 1 5.0103 -0.6182 7.8162 39 1 7.7931 0.2979 10.0475 40 1 1.1579 -1.3348 4.4279 41 1 0.3419 -0.1656 2.4202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295783726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:37 Heat of formation + Delta-G solvation = -65.917578 kcal Electronic energy + Delta-G solvation = -18925.508940 eV Core-core repulsion = 15996.402911 eV Total energy + Delta-G solvation = -2929.106029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85194 -38.71669 -37.23412 -35.14893 -33.83317 -32.21721 -31.68979 -30.13640 -28.23069 -26.99923 -25.18345 -23.55464 -22.85041 -22.43855 -20.93984 -18.52162 -17.75876 -17.60175 -16.89532 -16.48622 -16.07756 -15.78560 -15.52369 -15.31088 -14.94297 -14.51925 -14.35885 -14.23869 -14.13938 -13.62134 -13.50190 -13.03788 -12.89677 -12.84649 -12.68606 -12.59160 -12.54867 -12.38271 -11.97159 -11.81698 -11.57279 -11.38870 -11.24177 -11.01974 -10.57238 -9.81067 -9.58323 -9.26101 -8.20810 -6.32738 0.35155 0.52260 1.40216 1.42062 1.53295 2.40224 2.75139 3.12483 3.27654 3.52934 3.70930 3.92199 3.96132 4.03632 4.13500 4.20117 4.40847 4.50064 4.53108 4.60206 4.68503 4.70987 4.71169 4.84953 4.91105 4.96077 5.05175 5.13968 5.18986 5.20390 5.33369 5.42969 5.51073 5.65759 5.67057 5.73625 5.76944 6.06979 6.12779 6.24807 6.47773 6.84548 6.92807 7.36658 8.91474 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.044607 B = 0.002837 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.546824 B = 9866.676685 C =10006.502619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.169 3.831 3 C -0.171 4.171 4 O -0.574 6.574 5 C -0.088 4.088 6 C -0.107 4.107 7 C -0.126 4.126 8 C -0.088 4.088 9 C 0.099 3.901 10 N -0.691 5.691 11 C 0.083 3.917 12 C 0.032 3.968 13 C -0.545 4.545 14 H 0.062 0.938 15 C -0.001 4.001 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.262 1.262 21 C -0.110 4.110 22 C -0.116 4.116 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.394 0.606 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.337 0.663 35 H 0.061 0.939 36 H 0.021 0.979 37 H -0.010 1.010 38 H -0.006 1.006 39 H 0.264 0.736 40 H 0.130 0.870 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.368 0.058 -21.668 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.128 3.872 3 C -0.229 4.229 4 O -0.383 6.383 5 C -0.089 4.089 6 C -0.125 4.125 7 C -0.145 4.145 8 C -0.088 4.088 9 C -0.029 4.029 10 N -0.322 5.322 11 C -0.045 4.045 12 C -0.005 4.005 13 C -0.584 4.584 14 H 0.080 0.920 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.128 4.128 22 C -0.133 4.133 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.244 0.756 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.008 0.992 38 H 0.012 0.988 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.559 0.082 -20.826 25.411 hybrid contribution 1.154 -0.360 0.183 1.223 sum -13.405 -0.278 -20.643 24.615 Atomic orbital electron populations 1.22517 0.93667 1.02876 1.04043 1.19881 0.93424 0.90578 0.83280 1.22457 1.01650 0.95008 1.03741 1.86531 1.77596 1.57679 1.16453 1.19834 0.95125 0.99005 0.94888 1.21034 0.96345 0.97160 0.97955 1.21213 0.99919 1.00444 0.92889 1.19884 0.95483 0.99068 0.94361 1.20898 0.97541 0.92833 0.91645 1.60557 1.27167 1.36333 1.08169 1.21818 0.96992 0.95266 0.90467 1.18916 0.93360 0.94426 0.93846 1.21617 1.31251 0.98365 1.07128 0.92012 1.26007 0.96446 0.95494 1.01916 1.70117 1.38281 1.10453 1.38392 0.85393 0.78855 0.78259 0.78202 1.19699 1.20673 1.18646 1.21187 0.95924 0.96970 0.98752 1.21235 1.00451 0.99716 0.91947 0.90474 0.89986 0.92432 0.93029 0.89730 0.91360 0.75567 0.85497 0.85798 0.94248 0.90063 0.84572 0.92016 0.96109 0.99199 0.98774 0.92714 0.85227 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 8.12 71.98 0.58 -1.47 16 2 C 0.17 2.72 1.23 -11.54 -0.01 2.71 16 3 C -0.17 -2.41 8.80 71.98 0.63 -1.78 16 4 O -0.57 -9.35 11.96 -148.98 -1.78 -11.13 16 5 C -0.09 -1.97 4.84 -19.86 -0.10 -2.06 16 6 C -0.11 -2.67 9.35 22.27 0.21 -2.46 16 7 C -0.13 -3.34 9.70 22.27 0.22 -3.13 16 8 C -0.09 -2.44 5.39 -19.86 -0.11 -2.55 16 9 C 0.10 2.99 5.81 85.56 0.50 3.49 16 10 N -0.69 -25.82 6.49 -517.91 -3.36 -29.19 16 11 C 0.08 3.60 5.62 86.30 0.49 4.09 16 12 C 0.03 1.75 5.23 29.85 0.16 1.91 16 13 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 14 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 17 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 C -0.11 -2.80 9.70 22.27 0.22 -2.59 16 22 C -0.12 -2.53 9.14 22.27 0.20 -2.33 16 23 H 0.08 0.82 6.51 -2.39 -0.02 0.80 16 24 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.39 2.83 9.05 -74.05 -0.67 2.16 16 30 H 0.13 3.01 7.49 -2.91 -0.02 2.99 16 31 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 33 H 0.08 2.35 8.08 -2.38 -0.02 2.33 16 34 H 0.34 12.57 8.72 -89.70 -0.78 11.78 16 35 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 39 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 41 H 0.15 2.39 6.17 -2.91 -0.02 2.37 16 Total: -1.00 -68.96 339.66 0.41 -68.56 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.44 Total: 19.76 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 3.68 Total: -37.21 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.08 Total: -86.76 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -1.78 Total: -11.13 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.96 0.41 -68.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295783726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.639 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds