Wall clock time and date at job start Mon Mar 30 2020 00:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38288 * 119.94833 * 2 1 4 4 C 1.38122 * 120.05721 * 180.25120 * 3 2 1 5 5 C 1.38752 * 119.94198 * 359.49602 * 4 3 2 6 6 O 1.35906 * 120.05904 * 180.27140 * 5 4 3 7 7 C 1.42902 * 116.99492 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46876 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46983 * 179.97438 * 8 7 6 10 10 N 1.46504 * 109.47091 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99400 * 269.99836 * 10 9 8 12 12 C 1.36933 * 120.00277 * 89.99725 * 10 9 8 13 13 H 1.08002 * 119.99627 * 22.34113 * 12 10 9 14 14 C 1.38810 * 119.99948 * 202.34119 * 12 10 9 15 15 N 1.31624 * 120.00130 * 11.35701 * 14 12 10 16 16 Si 1.86800 * 119.99953 * 191.35443 * 14 12 10 17 17 H 1.48494 * 109.47178 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47119 * 120.00221 * 16 14 12 19 19 H 1.48498 * 109.47158 * 240.00319 * 16 14 12 20 20 C 1.38714 * 119.89275 * 0.25313 * 5 4 3 21 21 C 1.38173 * 119.93967 * 359.97438 * 20 5 4 22 22 C 1.50701 * 119.97097 * 180.02562 * 21 20 5 23 23 H 1.08991 * 109.47272 * 270.25390 * 1 2 3 24 24 H 1.09006 * 109.47079 * 30.25435 * 1 2 3 25 25 H 1.09002 * 109.47586 * 150.24722 * 1 2 3 26 26 H 1.07998 * 119.96946 * 0.02562 * 3 2 1 27 27 H 1.07996 * 120.03249 * 179.76545 * 4 3 2 28 28 H 1.09007 * 109.46912 * 299.99513 * 7 6 5 29 29 H 1.08997 * 109.47466 * 59.99494 * 7 6 5 30 30 H 1.08995 * 109.47330 * 299.99272 * 8 7 6 31 31 H 1.08993 * 109.47748 * 59.99948 * 8 7 6 32 32 H 1.09007 * 109.46873 * 299.99562 * 9 8 7 33 33 H 1.08997 * 109.47398 * 59.99477 * 9 8 7 34 34 H 1.08996 * 109.47225 * 94.21020 * 11 10 9 35 35 H 1.09007 * 109.46670 * 214.20831 * 11 10 9 36 36 H 1.08997 * 109.47372 * 334.20388 * 11 10 9 37 37 H 0.96996 * 120.00054 * 179.97438 * 15 14 12 38 38 H 1.07992 * 120.03163 * 180.02562 * 20 5 4 39 39 H 1.08996 * 109.47000 * 89.99903 * 22 21 20 40 40 H 1.08994 * 109.46891 * 210.00288 * 22 21 20 41 41 H 1.09004 * 109.46779 * 329.99485 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 -0.0052 5 6 4.2734 -0.0001 0.0001 6 8 5.6324 -0.0003 0.0005 7 6 6.2812 1.2730 -0.0041 8 6 7.7980 1.0724 -0.0022 9 6 8.4927 2.4356 -0.0078 10 7 9.9451 2.2436 -0.0066 11 6 10.6709 2.1530 1.2628 12 6 10.6242 2.1488 -1.1919 13 1 10.1960 2.5602 -2.0940 14 6 11.8630 1.5239 -1.2340 15 7 12.2857 0.8302 -0.1983 16 14 12.9301 1.6674 -2.7604 17 1 12.2323 2.4958 -3.7762 18 1 14.2218 2.3072 -2.4030 19 1 13.1850 0.3137 -3.3152 20 6 3.5787 -1.2007 0.0053 21 6 2.1969 -1.1980 0.0058 22 6 1.4415 -2.5019 0.0121 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5100 26 1 1.6560 2.1327 0.0004 27 1 4.1173 2.1369 -0.0091 28 1 5.9887 1.8266 -0.8964 29 1 5.9881 1.8334 0.8836 30 1 8.0903 0.5191 0.8902 31 1 8.0916 0.5119 -0.8897 32 1 8.2005 2.9887 -0.9006 33 1 8.1992 2.9967 0.8794 34 1 10.7813 1.1058 1.5443 35 1 11.6564 2.6051 1.1508 36 1 10.1150 2.6809 2.0376 37 1 13.1511 0.3932 -0.2279 38 1 4.1172 -2.1368 0.0099 39 1 1.2597 -2.8115 1.0412 40 1 0.4892 -2.3725 -0.5021 41 1 2.0293 -3.2648 -0.4986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299586222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:29 Heat of formation + Delta-G solvation = -23.541227 kcal Electronic energy + Delta-G solvation = -19059.297358 eV Core-core repulsion = 16132.028905 eV Total energy + Delta-G solvation = -2927.268452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18376 -39.07526 -37.72143 -34.47313 -33.53975 -32.92967 -31.89607 -28.63249 -27.97032 -27.10959 -26.60703 -24.02334 -23.03281 -21.93786 -21.32903 -18.87965 -18.60733 -17.23366 -17.17099 -16.78692 -16.20670 -15.61517 -15.48323 -15.12145 -15.03358 -14.64184 -14.40853 -14.22426 -14.06513 -13.55142 -13.21679 -13.19605 -12.89362 -12.80835 -12.73322 -12.64818 -12.44716 -12.28119 -12.07196 -12.02568 -11.88367 -11.69435 -11.60140 -11.35174 -10.67730 -9.73745 -8.94948 -8.84300 -7.85001 -5.33786 0.36897 0.47609 1.45333 1.45883 1.56888 2.23703 2.50729 2.76580 3.30138 3.66192 3.86689 3.91428 3.97551 4.09850 4.14318 4.29941 4.37272 4.39621 4.46139 4.53447 4.68210 4.75144 4.77281 4.83572 4.84763 4.86329 4.97295 5.04203 5.20869 5.22716 5.24247 5.30470 5.40329 5.44493 5.46643 5.62220 5.71269 5.74114 5.94959 6.31415 6.52036 7.13210 7.84817 8.27882 9.19106 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037067 B = 0.003107 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.215416 B = 9010.666372 C = 9184.522282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.137 4.137 3 C -0.081 4.081 4 C -0.221 4.221 5 C 0.105 3.895 6 O -0.341 6.341 7 C 0.074 3.926 8 C -0.124 4.124 9 C 0.155 3.845 10 N -0.621 5.621 11 C 0.175 3.825 12 C -0.263 4.263 13 H 0.074 0.926 14 C -0.058 4.058 15 N -0.941 5.941 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.289 1.289 19 H -0.294 1.294 20 C -0.176 4.176 21 C -0.056 4.056 22 C -0.116 4.116 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.000 1.000 35 H 0.020 0.980 36 H 0.034 0.966 37 H 0.248 0.752 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.932 -0.642 1.428 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C -0.099 4.099 4 C -0.240 4.240 5 C 0.060 3.940 6 O -0.256 6.256 7 C -0.001 4.001 8 C -0.165 4.165 9 C 0.029 3.971 10 N -0.343 5.343 11 C 0.030 3.970 12 C -0.394 4.394 13 H 0.092 0.908 14 C -0.252 4.252 15 N -0.588 5.588 16 Si 0.799 3.201 17 H -0.188 1.188 18 H -0.216 1.216 19 H -0.221 1.221 20 C -0.195 4.195 21 C -0.056 4.056 22 C -0.172 4.172 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.166 0.834 27 H 0.155 0.845 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.018 0.982 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.638 -0.848 1.453 24.695 hybrid contribution 1.426 -0.157 -0.601 1.555 sum -23.212 -1.005 0.852 23.249 Atomic orbital electron populations 1.20825 0.88873 1.03738 1.02996 1.20067 0.97802 0.92074 1.03759 1.21152 0.92778 0.98909 0.97066 1.21469 0.96221 0.96988 1.09286 1.19378 0.82289 0.95283 0.97027 1.86082 1.17091 1.33765 1.88643 1.22818 0.91944 0.83189 1.02170 1.22108 0.91957 1.01396 1.01041 1.20883 0.82375 0.93184 1.00676 1.44272 1.02327 1.84804 1.02939 1.20578 0.94088 0.97102 0.85206 1.19629 1.01048 1.29931 0.88741 0.90824 1.25864 1.01015 0.97848 1.00496 1.70255 1.20443 1.36305 1.31783 0.85140 0.78561 0.77019 0.79365 1.18836 1.21607 1.22084 1.20519 0.94246 0.96172 1.08541 1.19887 0.91855 0.96861 0.96984 1.20935 1.00421 0.92395 1.03427 0.90528 0.90773 0.90216 0.83424 0.84457 0.90993 0.90493 0.93710 0.94144 0.92495 0.91433 0.98201 0.96128 0.94808 0.94310 0.85829 0.89918 0.89145 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.60 71.23 0.68 -0.58 16 2 C -0.14 -2.61 5.88 -19.85 -0.12 -2.73 16 3 C -0.08 -1.64 9.69 22.25 0.22 -1.43 16 4 C -0.22 -5.47 9.04 22.37 0.20 -5.27 16 5 C 0.11 3.14 6.69 22.51 0.15 3.29 16 6 O -0.34 -11.79 10.14 -92.49 -0.94 -12.73 16 7 C 0.07 2.28 4.74 71.98 0.34 2.62 16 8 C -0.12 -4.87 5.91 30.59 0.18 -4.69 16 9 C 0.16 6.20 5.71 86.38 0.49 6.69 16 10 N -0.62 -31.87 2.93 -726.90 -2.13 -34.00 16 11 C 0.18 8.92 9.01 127.77 1.15 10.07 16 12 C -0.26 -14.76 9.67 84.03 0.81 -13.94 16 13 H 0.07 3.98 7.84 -2.91 -0.02 3.95 16 14 C -0.06 -3.31 5.13 84.86 0.44 -2.87 16 15 N -0.94 -57.22 10.59 21.65 0.23 -56.99 16 16 Si 0.97 45.98 29.57 68.60 2.03 48.01 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 20 C -0.18 -4.76 9.64 22.37 0.22 -4.54 16 21 C -0.06 -1.18 5.88 -19.88 -0.12 -1.30 16 22 C -0.12 -1.65 9.60 71.24 0.68 -0.96 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 25 H 0.08 0.74 5.94 -2.39 -0.01 0.73 16 26 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 27 H 0.14 3.01 6.30 -2.91 -0.02 2.99 16 28 H 0.07 2.00 7.66 -2.38 -0.02 1.98 16 29 H 0.08 2.04 7.66 -2.39 -0.02 2.02 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 2.14 8.03 -2.38 -0.02 2.12 16 33 H 0.07 2.32 7.86 -2.39 -0.02 2.30 16 34 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 35 H 0.02 1.11 7.19 -2.38 -0.02 1.09 16 36 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 37 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 38 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 0.93 5.94 -2.39 -0.01 0.92 16 41 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 Total: -1.00 -68.37 333.58 5.52 -62.86 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.99 Total: 8.49 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.33 Total: -15.64 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -1.90 Total: -90.99 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.94 Total: -12.73 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -68.37 5.52 -62.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299586222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.315 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds