Wall clock time and date at job start Mon Mar 30 2020 00:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00004 * 2 1 4 4 H 1.48499 * 109.46687 * 274.68778 * 3 2 1 5 5 H 1.48495 * 109.47030 * 34.69038 * 3 2 1 6 6 H 1.48497 * 109.47145 * 154.68910 * 3 2 1 7 7 C 1.39933 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00061 * 197.84178 * 7 2 1 9 9 C 1.41405 * 119.99735 * 17.84129 * 7 2 1 10 10 C 1.40791 * 120.20735 * 204.36258 * 9 7 2 11 11 C 1.37642 * 119.89252 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32678 * 0.04368 * 11 10 9 13 13 C 1.39288 * 120.42592 * 359.97438 * 12 11 10 14 14 N 1.39684 * 119.95256 * 180.02562 * 13 12 11 15 15 C 1.46494 * 120.00208 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.47482 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47353 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47353 * 179.97438 * 17 16 15 19 19 C 1.52994 * 109.47353 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47353 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47190 * 179.97438 * 20 19 18 22 22 C 1.38321 * 120.09678 * 359.97438 * 13 12 11 23 23 H 0.97001 * 120.00231 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.05383 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.83436 * 180.02562 * 11 10 9 26 26 H 1.08007 * 119.78650 * 179.97438 * 12 11 10 27 27 H 0.97006 * 120.00436 * 179.97438 * 14 13 12 28 28 H 1.09006 * 109.47461 * 300.00351 * 15 14 13 29 29 H 1.08997 * 109.47121 * 60.00220 * 15 14 13 30 30 H 1.09004 * 109.46977 * 299.99927 * 16 15 14 31 31 H 1.08997 * 109.47027 * 59.99839 * 16 15 14 32 32 H 1.09006 * 109.47347 * 299.99879 * 17 16 15 33 33 H 1.08997 * 109.47364 * 59.99826 * 17 16 15 34 34 H 1.08999 * 109.46541 * 299.99602 * 18 17 16 35 35 H 1.08997 * 109.47027 * 59.99620 * 18 17 16 36 36 H 1.09006 * 109.47347 * 299.99879 * 19 18 17 37 37 H 1.09001 * 109.47260 * 59.99321 * 19 18 17 38 38 H 1.08999 * 109.46541 * 299.99602 * 20 19 18 39 39 H 1.08997 * 109.47027 * 59.99620 * 20 19 18 40 40 H 0.96700 * 114.00017 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.16588 * 179.72481 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1036 -1.3954 5 1 1.4928 2.6220 0.7968 6 1 3.5858 1.4136 0.5986 7 6 2.0079 -1.2118 0.0005 8 1 3.0490 -1.2342 0.2871 9 6 1.3519 -2.4071 -0.3741 10 6 1.8269 -3.6501 0.0860 11 6 1.1830 -4.8095 -0.2823 12 6 0.0696 -4.7602 -1.1048 13 6 -0.4116 -3.5380 -1.5681 14 7 -1.5355 -3.4997 -2.3967 15 6 -2.2070 -4.7445 -2.7782 16 6 -3.3989 -4.4247 -3.6827 17 6 -4.1005 -5.7247 -4.0806 18 6 -5.2928 -5.4048 -4.9846 19 6 -5.9948 -6.7048 -5.3820 20 6 -7.1874 -6.3849 -6.2855 21 8 -7.8427 -7.5991 -6.6571 22 6 0.2213 -2.3619 -1.2081 23 1 -0.4850 0.8400 -0.0004 24 1 2.6946 -3.6936 0.7276 25 1 1.5479 -5.7624 0.0716 26 1 -0.4287 -5.6755 -1.3887 27 1 -1.8715 -2.6489 -2.7195 28 1 -1.5068 -5.3858 -3.3137 29 1 -2.5574 -5.2576 -1.8827 30 1 -4.0993 -3.7834 -3.1476 31 1 -3.0481 -3.9119 -4.5782 32 1 -3.4004 -6.3665 -4.6156 33 1 -4.4514 -6.2372 -3.1849 34 1 -5.9927 -4.7634 -4.4492 35 1 -4.9423 -4.8921 -5.8804 36 1 -5.2950 -7.3467 -5.9173 37 1 -6.3452 -7.2171 -4.4860 38 1 -7.8871 -5.7433 -5.7498 39 1 -6.8373 -5.8724 -7.1815 40 1 -8.6105 -7.4720 -7.2311 41 1 -0.1482 -1.4139 -1.5703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313437248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:53 Heat of formation + Delta-G solvation = -62.800386 kcal Electronic energy + Delta-G solvation = -18527.224865 eV Core-core repulsion = 15598.254007 eV Total energy + Delta-G solvation = -2928.970857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.96695 -37.59395 -36.22500 -34.59527 -33.29172 -31.58220 -29.38936 -28.47238 -26.17452 -25.17407 -23.29660 -21.58094 -21.30677 -20.47241 -19.77739 -17.63352 -17.14507 -16.37515 -15.73695 -15.27960 -14.91038 -14.70464 -14.50282 -14.05608 -13.86362 -13.21036 -12.78153 -12.61912 -12.45712 -12.32243 -12.10772 -11.60583 -11.40479 -11.31327 -11.18896 -11.04771 -10.94407 -10.77824 -10.63745 -10.47247 -10.34617 -10.31985 -9.57195 -9.40196 -9.20132 -8.70845 -7.27026 -6.69361 -6.11339 -4.27404 2.89509 3.11857 3.16079 3.27187 3.37959 3.79955 4.00394 4.35031 4.61305 4.73236 4.76246 4.93888 4.95063 5.04455 5.20266 5.29111 5.49033 5.57571 5.68527 5.71634 5.83108 5.86580 5.90964 6.01868 6.10476 6.31904 6.33272 6.35325 6.63703 6.92577 7.15976 7.18046 7.24695 7.42209 7.49078 7.86182 8.00897 8.15342 8.21750 8.53385 8.76884 8.88487 9.05320 9.16600 10.29379 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030777 B = 0.002847 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.542855 B = 9832.448216 C =10633.221796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.137 3.863 10 C -0.257 4.257 11 C -0.067 4.067 12 C -0.299 4.299 13 C 0.215 3.785 14 N -0.763 5.763 15 C 0.137 3.863 16 C -0.130 4.130 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.122 4.122 20 C 0.074 3.926 21 O -0.577 6.577 22 C -0.232 4.232 23 H 0.277 0.723 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.389 0.611 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.378 0.622 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.330 -6.720 -10.620 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.134 3.866 10 C -0.278 4.278 11 C -0.086 4.086 12 C -0.322 4.322 13 C 0.116 3.884 14 N -0.396 5.396 15 C 0.011 3.989 16 C -0.168 4.168 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.004 4.004 21 O -0.383 6.383 22 C -0.256 4.256 23 H 0.087 0.913 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.222 0.778 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.225 0.775 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.089 -7.020 -10.231 17.324 hybrid contribution -0.287 1.376 -0.395 1.460 sum -12.376 -5.643 -10.626 17.260 Atomic orbital electron populations 1.69874 1.07498 1.28677 1.35837 1.25879 0.94674 1.01081 0.92364 0.86368 0.80681 0.81025 0.78993 1.19499 1.20451 1.18642 1.19564 0.98075 0.91286 1.40547 0.90577 1.17335 0.90126 0.91860 0.87244 1.20860 1.04812 0.92933 1.09173 1.20287 0.95153 0.96262 0.96872 1.19889 1.04517 0.94410 1.13399 1.17664 0.86334 0.94325 0.90049 1.44434 1.31893 1.06501 1.56804 1.21030 0.92725 0.88230 0.96880 1.21767 0.97353 0.97831 0.99819 1.21477 0.96668 0.97557 0.99555 1.21506 0.97366 0.96646 0.99886 1.21551 0.96195 0.98504 0.99663 1.22247 0.94400 0.86090 0.97654 1.86484 1.47736 1.32262 1.71791 1.20724 1.02653 0.95025 1.07199 0.91262 0.89395 0.89642 0.89680 0.77830 0.93526 0.93494 0.91607 0.91673 0.91655 0.91633 0.91761 0.91782 0.91209 0.91198 0.93678 0.93700 0.77511 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.96 10.95 55.55 0.61 -20.36 16 2 C 0.08 1.99 5.14 -17.35 -0.09 1.90 16 3 Si 0.90 19.11 29.60 -169.99 -5.03 14.08 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.75 9.05 -37.74 -0.34 -13.09 16 8 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 9 C 0.14 3.82 5.57 -106.85 -0.60 3.22 16 10 C -0.26 -6.65 9.79 -38.83 -0.38 -7.03 16 11 C -0.07 -1.59 10.01 -39.70 -0.40 -1.99 16 12 C -0.30 -7.02 9.32 -39.09 -0.36 -7.38 16 13 C 0.22 5.16 6.64 -83.86 -0.56 4.60 16 14 N -0.76 -14.88 5.73 -58.69 -0.34 -15.22 16 15 C 0.14 2.14 4.91 -4.04 -0.02 2.12 16 16 C -0.13 -1.54 5.33 -26.73 -0.14 -1.68 16 17 C -0.11 -1.12 5.21 -26.73 -0.14 -1.26 16 18 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 19 C -0.12 -1.03 5.58 -26.73 -0.15 -1.18 16 20 C 0.07 0.56 7.05 37.16 0.26 0.82 16 21 O -0.58 -4.90 13.66 -35.23 -0.48 -5.38 16 22 C -0.23 -6.20 8.53 -38.67 -0.33 -6.53 16 23 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 24 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 25 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 26 H 0.08 1.80 6.70 -52.48 -0.35 1.45 16 27 H 0.39 7.16 8.48 -40.82 -0.35 6.81 16 28 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.38 1.42 9.12 45.56 0.42 1.83 16 41 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -30.38 338.70 -9.57 -39.95 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.05 Total: 10.42 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -3.38 Total: -28.60 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.27 Total: -35.58 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.48 Total: -5.38 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.38 -9.57 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.852 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds