Wall clock time and date at job start Mon Mar 30 2020 00:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00264 * 2 1 4 4 C 1.53009 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46859 * 64.99710 * 4 3 2 6 6 C 1.36937 * 120.00174 * 264.42735 * 5 4 3 7 7 H 1.07995 * 119.99960 * 146.16535 * 6 5 4 8 8 C 1.38812 * 119.99601 * 326.16386 * 6 5 4 9 9 N 1.31622 * 120.00254 * 337.63308 * 8 6 5 10 10 Si 1.86800 * 119.99910 * 157.63461 * 8 6 5 11 11 H 1.48495 * 109.47236 * 89.99664 * 10 8 6 12 12 H 1.48503 * 109.47315 * 210.00224 * 10 8 6 13 13 H 1.48506 * 109.47113 * 329.99861 * 10 8 6 14 14 C 1.46506 * 119.99692 * 84.43147 * 5 4 3 15 15 C 1.50699 * 109.46835 * 89.99725 * 14 5 4 16 16 C 1.38237 * 120.00187 * 269.72050 * 15 14 5 17 17 C 1.38235 * 120.00072 * 179.76914 * 16 15 14 18 18 C 1.50696 * 119.99890 * 180.25349 * 17 16 15 19 19 C 1.38236 * 119.99871 * 0.48603 * 17 16 15 20 20 C 1.38231 * 119.99995 * 359.79246 * 19 17 16 21 21 C 1.50707 * 119.99804 * 179.97438 * 20 19 17 22 22 C 1.38234 * 119.99846 * 90.00051 * 15 14 5 23 23 H 1.09000 * 109.47412 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46771 * 300.00161 * 1 2 3 25 25 H 1.08998 * 109.47220 * 60.00186 * 1 2 3 26 26 H 1.08997 * 109.47603 * 59.99966 * 3 2 1 27 27 H 1.09006 * 109.46844 * 299.99777 * 3 2 1 28 28 H 1.09003 * 109.46603 * 184.99697 * 4 3 2 29 29 H 1.08994 * 109.47058 * 304.99691 * 4 3 2 30 30 H 0.96997 * 119.99891 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.46826 * 209.99479 * 14 5 4 32 32 H 1.08998 * 109.47346 * 329.99408 * 14 5 4 33 33 H 1.08002 * 119.99695 * 0.02562 * 16 15 14 34 34 H 1.08999 * 109.47037 * 270.23147 * 18 17 16 35 35 H 1.09001 * 109.47261 * 30.23479 * 18 17 16 36 36 H 1.09003 * 109.46876 * 150.23165 * 18 17 16 37 37 H 1.08002 * 120.00049 * 179.76406 * 19 17 16 38 38 H 1.09000 * 109.46617 * 269.97341 * 21 20 19 39 39 H 1.08997 * 109.47299 * 29.97511 * 21 20 19 40 40 H 1.09003 * 109.47086 * 149.97894 * 21 20 19 41 41 H 1.07998 * 120.00576 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5641 -1.2528 6 6 4.2065 -0.7846 -1.3045 7 1 3.9949 -1.3343 -2.2097 8 6 4.7127 -1.4452 -0.1935 9 7 5.3732 -0.7746 0.7266 10 14 4.4565 -3.2858 -0.0043 11 1 5.5856 -4.0108 -0.6405 12 1 4.3966 -3.6315 1.4387 13 1 3.1836 -3.6785 -0.6605 14 6 4.1688 1.3869 -2.4495 15 6 5.5899 1.8867 -2.4914 16 6 5.9163 3.0922 -1.8987 17 6 7.2208 3.5483 -1.9330 18 6 7.5778 4.8597 -1.2819 19 6 8.1969 2.8039 -2.5687 20 6 7.8693 1.6013 -3.1663 21 6 8.9333 0.7900 -3.8598 22 6 6.5658 1.1425 -3.1275 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.9786 2.1764 0.0889 29 1 3.8515 0.5681 0.8409 30 1 5.7272 -1.2363 1.5027 31 1 3.9678 0.7885 -3.3381 32 1 3.4857 2.2358 -2.4210 33 1 5.1530 3.6755 -1.4053 34 1 7.4651 5.6671 -2.0055 35 1 6.9159 5.0365 -0.4341 36 1 8.6106 4.8239 -0.9353 37 1 9.2153 3.1621 -2.5988 38 1 8.9905 1.0858 -4.9073 39 1 9.8956 0.9664 -3.3793 40 1 8.6832 -0.2689 -3.7944 41 1 6.3100 0.2027 -3.5941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317159513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:24 Heat of formation + Delta-G solvation = -10.839420 kcal Electronic energy + Delta-G solvation = -20351.454637 eV Core-core repulsion = 17424.736977 eV Total energy + Delta-G solvation = -2926.717661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.88834 -37.17085 -35.34250 -32.94003 -32.26707 -30.75674 -28.67375 -26.96418 -26.08090 -25.61992 -25.44035 -23.04446 -20.90529 -20.07536 -19.36640 -16.68530 -15.70977 -15.60082 -15.09173 -14.93260 -14.65697 -14.00061 -13.80076 -13.69881 -13.32572 -13.23455 -12.85172 -12.52713 -12.31259 -12.13194 -11.84505 -11.66220 -11.45875 -11.03347 -10.98637 -10.80796 -10.67701 -10.59399 -10.46043 -10.23266 -10.00045 -9.85284 -9.67207 -8.83585 -8.36829 -7.85255 -7.81016 -6.54742 -5.68813 -3.17512 2.11217 2.15611 3.45359 3.52419 3.58563 4.41671 4.63732 4.69303 5.30283 5.37846 5.44470 5.54240 5.64606 5.73576 5.75733 5.76691 5.80947 5.87854 5.96668 5.99154 6.06326 6.10737 6.14868 6.19884 6.24675 6.30622 6.34544 6.38191 6.51674 6.75656 6.81516 6.88092 6.91013 7.23126 7.28247 7.55047 7.71712 7.81778 7.90035 8.07664 8.59963 9.25786 9.90620 10.44365 11.33668 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.007044 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.819645 B = 3974.277964 C = 4942.117760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.046 3.954 4 C 0.143 3.857 5 N -0.564 5.564 6 C -0.237 4.237 7 H 0.059 0.941 8 C 0.015 3.985 9 N -0.887 5.887 10 Si 0.897 3.103 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.174 3.826 15 C -0.065 4.065 16 C -0.121 4.121 17 C -0.093 4.093 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.090 4.090 21 C -0.108 4.108 22 C -0.100 4.100 23 H 0.074 0.926 24 H 0.026 0.974 25 H 0.029 0.971 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.109 0.891 30 H 0.252 0.748 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 7.848 -4.706 9.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C -0.033 4.033 4 C 0.016 3.984 5 N -0.282 5.282 6 C -0.367 4.367 7 H 0.077 0.923 8 C -0.184 4.184 9 N -0.530 5.530 10 Si 0.727 3.273 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.048 3.952 15 C -0.069 4.069 16 C -0.139 4.139 17 C -0.093 4.093 18 C -0.163 4.163 19 C -0.159 4.159 20 C -0.090 4.090 21 C -0.165 4.165 22 C -0.119 4.119 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.010 7.593 -4.539 8.846 hybrid contribution -0.278 -0.718 0.389 0.863 sum -0.288 6.875 -4.150 8.035 Atomic orbital electron populations 1.22632 0.84218 1.01479 0.98415 1.88202 1.16595 1.27804 1.94829 1.23422 0.98946 0.84055 0.96865 1.21044 0.87152 0.97052 0.93115 1.43861 1.74447 1.03932 1.05973 1.18906 1.35876 0.82296 0.99595 0.92302 1.24990 0.96737 0.97579 0.99128 1.69984 1.35493 1.35252 1.12266 0.86397 0.78001 0.85991 0.76929 1.21781 1.21705 1.20321 1.20059 0.89048 0.93892 0.92178 1.20988 0.99401 0.92499 0.93987 1.20736 0.95217 0.96765 1.01230 1.19707 0.93842 0.96597 0.99163 1.20696 1.01425 0.94464 0.99751 1.20584 0.98118 0.95627 1.01615 1.19780 0.94809 0.95317 0.99116 1.20712 0.96895 0.99592 0.99267 1.20790 0.91948 0.99100 1.00106 0.90724 0.95534 0.95283 0.95628 0.95477 0.94375 0.87389 0.93786 0.92952 0.94012 0.87448 0.92084 0.92010 0.92275 0.87539 0.92071 0.92328 0.91723 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.88 10.44 -35.23 -0.37 -8.25 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.14 3.36 5.63 -4.04 -0.02 3.34 16 5 N -0.56 -13.87 2.39 -174.60 -0.42 -14.28 16 6 C -0.24 -6.47 9.28 -15.06 -0.14 -6.61 16 7 H 0.06 1.62 7.92 -52.49 -0.42 1.20 16 8 C 0.02 0.43 4.91 -17.43 -0.09 0.34 16 9 N -0.89 -25.86 11.34 55.49 0.63 -25.23 16 10 Si 0.90 22.42 29.61 -169.99 -5.03 17.39 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 14 C 0.17 3.68 5.82 -5.19 -0.03 3.65 16 15 C -0.07 -1.35 5.46 -104.62 -0.57 -1.93 16 16 C -0.12 -2.31 9.36 -39.58 -0.37 -2.68 16 17 C -0.09 -1.63 5.88 -104.63 -0.62 -2.25 16 18 C -0.11 -1.46 10.01 36.00 0.36 -1.10 16 19 C -0.14 -2.45 9.36 -39.58 -0.37 -2.82 16 20 C -0.09 -1.65 5.88 -104.62 -0.62 -2.26 16 21 C -0.11 -1.60 10.01 36.01 0.36 -1.23 16 22 C -0.10 -2.04 9.36 -39.58 -0.37 -2.42 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.52 8.11 -51.93 -0.42 0.10 16 28 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 29 H 0.11 2.94 5.34 -51.93 -0.28 2.67 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.05 1.09 7.98 -51.93 -0.41 0.67 16 32 H 0.04 0.80 7.99 -51.93 -0.41 0.38 16 33 H 0.11 1.92 8.06 -52.49 -0.42 1.49 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 342.50 15.07 5.16 5.16 Total: -1.00 -30.64 342.50 -8.14 -38.77 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.98 Total: -0.39 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.12 Total: -13.17 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.21 Total: -39.51 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.37 Total: -8.25 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.64 -8.14 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317159513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.934 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds